Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5763
Gene name
Locationscaffold_480:12896..13406
Strand-
Gene length (bp)510
Transcript length (bp)450
Coding sequence length (bp)447
Protein length (aa) 149

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03874 RNA_pol_Rpb4 RNA polymerase Rpb4 7.1E-21 11 125

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP PE=2 SV=1 1 149 2.0E-12
sp|O75575|RPC9_HUMAN DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1 1 149 2.0E-12
sp|Q60482|RPC9_CAVPO DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1 1 126 6.0E-11
sp|Q8VHM6|RPC9_RAT DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus GN=Crcp PE=2 SV=1 1 126 8.0E-11
sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1 1 126 2.0E-10
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|A0JN61|RPC9_BOVIN DNA-directed RNA polymerase III subunit RPC9 OS=Bos taurus GN=CRCP PE=2 SV=1 1 149 2.0E-12
sp|O75575|RPC9_HUMAN DNA-directed RNA polymerase III subunit RPC9 OS=Homo sapiens GN=CRCP PE=1 SV=1 1 149 2.0E-12
sp|Q60482|RPC9_CAVPO DNA-directed RNA polymerase III subunit RPC9 OS=Cavia porcellus GN=CRCP PE=2 SV=1 1 126 6.0E-11
sp|Q8VHM6|RPC9_RAT DNA-directed RNA polymerase III subunit RPC9 OS=Rattus norvegicus GN=Crcp PE=2 SV=1 1 126 8.0E-11
sp|O35427|RPC9_MOUSE DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1 1 126 2.0E-10
sp|Q9C0Z9|RPC9_SCHPO DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc17 PE=1 SV=1 1 125 2.0E-08
sp|P47076|RPC9_YEAST DNA-directed RNA polymerase III subunit RPC9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC17 PE=1 SV=2 1 123 3.0E-08
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GO

GO Term Description Terminal node
GO:0006352 DNA-templated transcription, initiation Yes
GO:0030880 RNA polymerase complex Yes
GO:0046483 heterocycle metabolic process No
GO:0061695 transferase complex, transferring phosphorus-containing groups No
GO:1990234 transferase complex No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901576 organic substance biosynthetic process No
GO:1902494 catalytic complex No
GO:0043170 macromolecule metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0044238 primary metabolic process No
GO:0032991 protein-containing complex No
GO:0018130 heterocycle biosynthetic process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0071704 organic substance metabolic process No
GO:0019438 aromatic compound biosynthetic process No
GO:0009987 cellular process No
GO:0032774 RNA biosynthetic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0140535 intracellular protein-containing complex No
GO:0009059 macromolecule biosynthetic process No
GO:0005575 cellular_component No
GO:0016070 RNA metabolic process No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044249 cellular biosynthetic process No
GO:0009058 biosynthetic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal|Nuclear export signal 0.5917 0.7977 0.0267 0.0609 0.1738 0.0025 0.0169 0.0473 0.0188 0.0037

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup1564
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|6594
Ophiocordyceps australis map64 (Brazil) OphauB2|6122
Ophiocordyceps camponoti-floridani Ophcf2|05821
Ophiocordyceps camponoti-rufipedis Ophun1|738
Ophiocordyceps kimflemingae Ophio5|5763 (this protein)
Ophiocordyceps subramaniannii Hirsu2|1147

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5763
MRIVESQSAVLTNYEVFQHLVDQRRRYRPTKRRGPGNLETVVKEVLVYMRERPSPLCQEPVTYSAECIAQLLERL
RPYDLSKGEVIMMFNHRPPDVAHLNTLVEDMSDRFSADQQEEIVHVIAEVLGRLDDGGEQQMDCAADGDGDTAD
Coding >Ophio5|5763
ATGCGAATCGTCGAGTCCCAATCCGCCGTCCTCACAAACTATGAGGTCTTCCAGCACCTCGTCGACCAGCGGCGT
CGATACCGGCCCACCAAGCGCCGCGGGCCCGGCAACCTCGAGACGGTAGTAAAGGAGGTATTGGTCTACATGCGC
GAGCGGCCCAGTCCGCTGTGTCAGGAGCCCGTCACTTACAGCGCCGAATGCATCGCCCAGCTGCTGGAGCGTCTG
CGGCCGTACGACCTGTCCAAGGGCGAGGTCATCATGATGTTCAACCACCGGCCGCCGGACGTCGCTCATCTCAAC
ACGCTTGTCGAGGACATGTCGGACCGCTTCTCCGCCGATCAGCAAGAGGAGATTGTCCATGTCATTGCTGAGGTC
CTTGGCCGGCTCGACGACGGCGGTGAGCAGCAAATGGACTGCGCCGCAGACGGAGATGGGGACACGGCAGAC
Transcript >Ophio5|5763
ATGCGAATCGTCGAGTCCCAATCCGCCGTCCTCACAAACTATGAGGTCTTCCAGCACCTCGTCGACCAGCGGCGT
CGATACCGGCCCACCAAGCGCCGCGGGCCCGGCAACCTCGAGACGGTAGTAAAGGAGGTATTGGTCTACATGCGC
GAGCGGCCCAGTCCGCTGTGTCAGGAGCCCGTCACTTACAGCGCCGAATGCATCGCCCAGCTGCTGGAGCGTCTG
CGGCCGTACGACCTGTCCAAGGGCGAGGTCATCATGATGTTCAACCACCGGCCGCCGGACGTCGCTCATCTCAAC
ACGCTTGTCGAGGACATGTCGGACCGCTTCTCCGCCGATCAGCAAGAGGAGATTGTCCATGTCATTGCTGAGGTC
CTTGGCCGGCTCGACGACGGCGGTGAGCAGCAAATGGACTGCGCCGCAGACGGAGATGGGGACACGGCAGACTGA
Gene >Ophio5|5763
ATGCGAATCGTCGAGTCCCAATCCGCCGTCCTCACAAACTATGAGGTCTTCCAGCACCTCGTCGACCAGCGGCGT
CGATACCGGCCCACCAAGCGCCGCGGGCCCGGCAACCTCGAGACGGTAGTAAAGGAGGTAGGTAAGCCGAGGGCG
CATCGCCTGACCGAGTTGCTGACACCAAAAAAAACTACCTAGGTATTGGTCTACATGCGCGAGCGGCCCAGTCCG
CTGTGTCAGGAGCCCGTCACTTACAGCGCCGAATGCATCGCCCAGCTGCTGGAGCGTCTGCGGCCGTACGACCTG
TCCAAGGGCGAGGTCATCATGATGTTCAACCACCGGCCGCCGGACGTCGCTCATCTCAACACGCTTGTCGAGGAC
ATGTCGGACCGCTTCTCCGCCGATCAGCAAGAGGAGATTGTCCATGTCATTGCTGAGGTCCTTGGCCGGCTCGAC
GACGGCGGTGAGCAGCAAATGGACTGCGCCGCAGACGGAGATGGGGACACGGCAGACTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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