Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5760
Gene name
Locationscaffold_480:10045..10822
Strand+
Gene length (bp)777
Transcript length (bp)777
Coding sequence length (bp)774
Protein length (aa) 258

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF10181 PIG-H GPI-GlcNAc transferase complex, PIG-H component 2.3E-27 161 226

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9Y7L7|GPI15_SCHPO Phosphatidylinositol N-acetylglucosaminyltransferase subunit gpi15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi15 PE=3 SV=1 159 240 3.0E-16
sp|Q5M9N4|PIGH_MOUSE Phosphatidylinositol N-acetylglucosaminyltransferase subunit H OS=Mus musculus GN=Pigh PE=2 SV=1 159 251 4.0E-08
sp|Q14442|PIGH_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit H OS=Homo sapiens GN=PIGH PE=1 SV=1 159 251 2.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

Domain # Start End Length
1 92 114 22
2 134 153 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5760
MRLVDSGRASPLTFDLSPFTLQIVASVSPNQLLAAIAHASTTTLSIPDMLFTTPPRLHIRRPSPTAAEFIVTTRP
SPPATLLSLRLLLRLPLLLLRFGLGLAALLLLYTHWAANFPDLAPPALGFLLLDRHDVLAIPLPVLLPAALATLW
LVCRRLYAQESLLVLRGLGVQTTEQSPSYLARSATRFIPTEKIQDIFINEAFRGFEVRYYLVVVVEGEPDVVVVF
PGLLPPRHIVEAVWRGARECLYEGRAEDKGLSL
Coding >Ophio5|5760
ATGCGGCTTGTCGACAGCGGACGGGCCTCACCTTTGACCTTTGACCTTTCACCTTTCACCTTGCAAATCGTTGCG
TCTGTCTCTCCCAACCAACTCCTTGCTGCAATCGCCCACGCCTCAACCACCACTCTATCTATACCCGATATGCTC
TTCACCACCCCTCCTCGCCTCCACATCCGCCGCCCCTCCCCCACCGCCGCCGAATTCATCGTCACCACCCGTCCT
TCACCGCCCGCTACCCTCCTCTCCCTCCGGCTCCTCCTCCGGCTCCCCCTTCTCCTCCTCCGATTCGGTCTCGGT
CTCGCCGCCCTACTCCTCCTCTACACCCACTGGGCCGCTAACTTTCCCGACCTCGCGCCCCCGGCCCTCGGCTTT
CTCCTCCTCGACCGACACGACGTCCTCGCTATCCCCCTACCCGTCCTGCTGCCCGCCGCCCTCGCGACCCTGTGG
CTCGTCTGTCGACGGCTGTACGCACAGGAATCGCTGCTTGTCCTGCGCGGGCTCGGCGTCCAGACAACGGAGCAG
TCGCCGTCTTACTTGGCTCGTTCCGCTACGCGCTTTATCCCCACCGAGAAGATTCAGGACATCTTCATCAACGAG
GCCTTCCGCGGATTCGAGGTGCGCTACTACCTCGTCGTCGTTGTCGAGGGCGAGCCGGATGTCGTCGTCGTCTTT
CCGGGACTCCTGCCCCCGAGGCATATCGTCGAGGCCGTCTGGAGGGGGGCTCGGGAGTGCCTCTACGAGGGCCGG
GCCGAGGACAAGGGGTTGTCGCTA
Transcript >Ophio5|5760
ATGCGGCTTGTCGACAGCGGACGGGCCTCACCTTTGACCTTTGACCTTTCACCTTTCACCTTGCAAATCGTTGCG
TCTGTCTCTCCCAACCAACTCCTTGCTGCAATCGCCCACGCCTCAACCACCACTCTATCTATACCCGATATGCTC
TTCACCACCCCTCCTCGCCTCCACATCCGCCGCCCCTCCCCCACCGCCGCCGAATTCATCGTCACCACCCGTCCT
TCACCGCCCGCTACCCTCCTCTCCCTCCGGCTCCTCCTCCGGCTCCCCCTTCTCCTCCTCCGATTCGGTCTCGGT
CTCGCCGCCCTACTCCTCCTCTACACCCACTGGGCCGCTAACTTTCCCGACCTCGCGCCCCCGGCCCTCGGCTTT
CTCCTCCTCGACCGACACGACGTCCTCGCTATCCCCCTACCCGTCCTGCTGCCCGCCGCCCTCGCGACCCTGTGG
CTCGTCTGTCGACGGCTGTACGCACAGGAATCGCTGCTTGTCCTGCGCGGGCTCGGCGTCCAGACAACGGAGCAG
TCGCCGTCTTACTTGGCTCGTTCCGCTACGCGCTTTATCCCCACCGAGAAGATTCAGGACATCTTCATCAACGAG
GCCTTCCGCGGATTCGAGGTGCGCTACTACCTCGTCGTCGTTGTCGAGGGCGAGCCGGATGTCGTCGTCGTCTTT
CCGGGACTCCTGCCCCCGAGGCATATCGTCGAGGCCGTCTGGAGGGGGGCTCGGGAGTGCCTCTACGAGGGCCGG
GCCGAGGACAAGGGGTTGTCGCTATAG
Gene >Ophio5|5760
ATGCGGCTTGTCGACAGCGGACGGGCCTCACCTTTGACCTTTGACCTTTCACCTTTCACCTTGCAAATCGTTGCG
TCTGTCTCTCCCAACCAACTCCTTGCTGCAATCGCCCACGCCTCAACCACCACTCTATCTATACCCGATATGCTC
TTCACCACCCCTCCTCGCCTCCACATCCGCCGCCCCTCCCCCACCGCCGCCGAATTCATCGTCACCACCCGTCCT
TCACCGCCCGCTACCCTCCTCTCCCTCCGGCTCCTCCTCCGGCTCCCCCTTCTCCTCCTCCGATTCGGTCTCGGT
CTCGCCGCCCTACTCCTCCTCTACACCCACTGGGCCGCTAACTTTCCCGACCTCGCGCCCCCGGCCCTCGGCTTT
CTCCTCCTCGACCGACACGACGTCCTCGCTATCCCCCTACCCGTCCTGCTGCCCGCCGCCCTCGCGACCCTGTGG
CTCGTCTGTCGACGGCTGTACGCACAGGAATCGCTGCTTGTCCTGCGCGGGCTCGGCGTCCAGACAACGGAGCAG
TCGCCGTCTTACTTGGCTCGTTCCGCTACGCGCTTTATCCCCACCGAGAAGATTCAGGACATCTTCATCAACGAG
GCCTTCCGCGGATTCGAGGTGCGCTACTACCTCGTCGTCGTTGTCGAGGGCGAGCCGGATGTCGTCGTCGTCTTT
CCGGGACTCCTGCCCCCGAGGCATATCGTCGAGGCCGTCTGGAGGGGGGCTCGGGAGTGCCTCTACGAGGGCCGG
GCCGAGGACAAGGGGTTGTCGCTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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