© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|5752 |
| Gene name | |
| Location | scaffold_48:48594..49575 |
| Strand | - |
| Gene length (bp) | 981 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 816 |
| Protein length (aa) | 272 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF20520 | Ac45-VOA1_TM | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | 1.2E-16 | 222 | 261 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 224 | 246 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5752 MRLRAALGVLALSCSAAALRDSFPLLLLSTAKFHDAANRYQYQTSAEALNHAREVLATCPTDRYLIATQPGIHAS DFRQPDGCAMPRLCRAAARPRIQSKFSVAEVVGNIEYPGFTQYIESECAKKGKAVIVDEVHLPPLNTEDRAGDLL KRDVILSDNLEAITKSDGYTILFLPRPGEPAYQAEFVDPLHQDLKRDLEPELVRREDNNTAWDRLPLFEKYQFFT PGIFTGIIVAVVLFSILGVGLNALSSLEVSYGAFEKDMGPAAQKKQQ |
| Coding | >Ophio5|5752 ATGCGTCTTAGAGCAGCACTCGGTGTTCTGGCGCTATCGTGCTCGGCAGCGGCACTGCGGGATTCATTCCCACTT CTACTCCTGTCCACGGCCAAGTTTCACGATGCCGCCAACCGCTACCAATATCAGACGAGCGCCGAGGCGTTGAAT CACGCCAGAGAAGTGCTCGCGACGTGCCCGACAGATCGATATCTTATCGCCACCCAGCCAGGCATCCATGCCTCT GACTTCCGCCAGCCCGATGGGTGTGCCATGCCACGTCTGTGCCGAGCCGCCGCGAGGCCACGGATCCAAAGCAAG TTCTCTGTTGCCGAGGTTGTTGGAAACATTGAATACCCTGGGTTTACCCAGTATATCGAATCCGAGTGCGCCAAG AAGGGCAAGGCTGTCATCGTCGACGAGGTCCATCTGCCGCCCTTGAACACAGAGGACAGAGCCGGCGACTTGCTC AAGCGGGATGTGATACTTTCCGACAACCTCGAAGCCATCACTAAGAGTGATGGCTATACTATCCTTTTCCTACCG AGACCGGGCGAGCCAGCGTACCAAGCTGAATTCGTCGACCCGTTACATCAGGATCTGAAGCGAGATCTGGAGCCT GAGCTTGTACGTCGCGAGGACAACAACACTGCATGGGACCGGCTTCCGCTGTTCGAGAAGTATCAATTCTTCACC CCGGGCATCTTCACGGGGATTATCGTGGCTGTGGTGCTCTTTTCGATTCTCGGCGTCGGCCTGAATGCGTTATCT AGCCTAGAGGTCTCGTATGGCGCTTTTGAGAAGGACATGGGTCCGGCTGCTCAGAAGAAGCAGCAG |
| Transcript | >Ophio5|5752 ATGCGTCTTAGAGCAGCACTCGGTGTTCTGGCGCTATCGTGCTCGGCAGCGGCACTGCGGGATTCATTCCCACTT CTACTCCTGTCCACGGCCAAGTTTCACGATGCCGCCAACCGCTACCAATATCAGACGAGCGCCGAGGCGTTGAAT CACGCCAGAGAAGTGCTCGCGACGTGCCCGACAGATCGATATCTTATCGCCACCCAGCCAGGCATCCATGCCTCT GACTTCCGCCAGCCCGATGGGTGTGCCATGCCACGTCTGTGCCGAGCCGCCGCGAGGCCACGGATCCAAAGCAAG TTCTCTGTTGCCGAGGTTGTTGGAAACATTGAATACCCTGGGTTTACCCAGTATATCGAATCCGAGTGCGCCAAG AAGGGCAAGGCTGTCATCGTCGACGAGGTCCATCTGCCGCCCTTGAACACAGAGGACAGAGCCGGCGACTTGCTC AAGCGGGATGTGATACTTTCCGACAACCTCGAAGCCATCACTAAGAGTGATGGCTATACTATCCTTTTCCTACCG AGACCGGGCGAGCCAGCGTACCAAGCTGAATTCGTCGACCCGTTACATCAGGATCTGAAGCGAGATCTGGAGCCT GAGCTTGTACGTCGCGAGGACAACAACACTGCATGGGACCGGCTTCCGCTGTTCGAGAAGTATCAATTCTTCACC CCGGGCATCTTCACGGGGATTATCGTGGCTGTGGTGCTCTTTTCGATTCTCGGCGTCGGCCTGAATGCGTTATCT AGCCTAGAGGTCTCGTATGGCGCTTTTGAGAAGGACATGGGTCCGGCTGCTCAGAAGAAGCAGCAGTGA |
| Gene | >Ophio5|5752 ATGCGTCTTAGAGCAGCACTCGGTGTTCTGGCGCTATCGTGCTCGGCAGCGGCACTGCGGGATTCATTCCCACTT CTACTCCTGTCCACGGCCAAGTAGGCGTTCCGGCCCCCGACGGCCCGCTCGCCTCCCCCTAATTGACACCTCGGC CAGGTTTCACGATGCCGCCAACCGCTACCAATATCAGACGAGCGCCGAGGCGTTGAATCACGCCAGAGAAGTGCT CGCGACGTGCCCGACAGATCGATATCTTATCGCCACCCAGCCAGGCATCCATGCCTCTGACTTCCGCCAGCCCGA TGGGTGTGCCATGCCACGTCTGTGCCGAGCCGCCGCGAGGCCACGGATCCAAAGCAAGTTCTCTGTTGCCGAGGT TGTTGGAAACATTGAATACCCTGGGTTTACCCAGTATATCGAATCCGAGTGCGCCAAGAAGGGCAAGGCTGTCAT CGTCGACGAGGTCCATCTGCCGCCCTTGAACACAGAGGACAGAGCCGGCGACTTGCTCAAGCGGGGTGAGGCAAC TCGGACAGTTCGCTGTGCGTCCATGTTGACTCAGTGGAAATAGATGTGATACTTTCCGACAACCTCGAAGCCATC ACTAAGAGTGATGGCTATACTATCCTTTTCCTACCGAGACCGGGCGAGCCAGCGTACCAAGCTGAATTCGTCGAC CCGTTACATCAGGATCTGAAGCGAGATCTGGAGCCTGAGCTTGTACGTCGCGAGGACAACAACACTGCATGGGAC CGGCTTCCGCTGTTCGAGAAGTATCAATTCTTCACCCCGGGTATGCCAGTCTCCACGCCCTCCTTTGTCCCTTGA CCTAACCCTCTTCCAGGCATCTTCACGGGGATTATCGTGGCTGTGGTGCTCTTTTCGATTCTCGGCGTCGGCCTG AATGCGTTATCTAGCCTAGAGGTCTCGTATGGCGCTTTTGAGAAGGACATGGGTCCGGCTGCTCAGAAGAAGCAG CAGTGA |