Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5751
Gene name
Locationscaffold_48:47788..48330
Strand+
Gene length (bp)542
Transcript length (bp)384
Coding sequence length (bp)381
Protein length (aa) 127

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03966 Trm112p Trm112p-like protein 9.4E-18 4 116

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q8X0S4|TR112_NEUCR Multifunctional methyltransferase subunit trm112 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rmt-1 PE=3 SV=1 1 127 8.0E-68
sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm112 PE=3 SV=1 1 122 2.0E-35
sp|P53738|TR112_YEAST Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM112 PE=1 SV=1 1 127 5.0E-34
sp|Q9C9R3|T112B_ARATH Multifunctional methyltransferase subunit TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1 1 122 1.0E-22
sp|Q9DCG9|TR112_MOUSE Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus GN=Trmt112 PE=1 SV=1 1 122 2.0E-20
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q8X0S4|TR112_NEUCR Multifunctional methyltransferase subunit trm112 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rmt-1 PE=3 SV=1 1 127 8.0E-68
sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm112 PE=3 SV=1 1 122 2.0E-35
sp|P53738|TR112_YEAST Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRM112 PE=1 SV=1 1 127 5.0E-34
sp|Q9C9R3|T112B_ARATH Multifunctional methyltransferase subunit TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1 1 122 1.0E-22
sp|Q9DCG9|TR112_MOUSE Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus GN=Trmt112 PE=1 SV=1 1 122 2.0E-20
sp|Q2KIA2|TR112_BOVIN Multifunctional methyltransferase subunit TRM112-like protein OS=Bos taurus GN=TRMT112 PE=2 SV=1 1 122 3.0E-20
sp|Q9UI30|TR112_HUMAN Multifunctional methyltransferase subunit TRM112-like protein OS=Homo sapiens GN=TRMT112 PE=1 SV=1 1 122 8.0E-19
sp|Q8LFJ5|T112A_ARATH Multifunctional methyltransferase subunit TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1 1 122 2.0E-16
sp|Q54N57|TR112_DICDI Multifunctional methyltransferase subunit TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489 PE=3 SV=1 1 122 3.0E-14
sp|O45241|TR112_CAEEL Multifunctional methyltransferase subunit TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3 SV=1 1 121 1.0E-10
sp|Q9VP65|TR112_DROME Multifunctional methyltransferase subunit TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2 SV=1 1 122 7.0E-09
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 99.63 44.14 155.12
CcL In ants, during behavior modification 80.26 33.75 126.78
CcD In ants, recently dead 125.60 59.10 192.11

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.474040 no
SC16a CcD 0.416816 no
CcL CcD 0.097485 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5751
MKVLSLNFLTCAVKGCRTSSASYPLHPRDAELVQDDIEINPDMLINLLPRLDWAALRETASELGFPDLPEQPPAL
EQLQADESMLRDLHHLLLETQISEGKLVCGNCGHEYAVKEGIANFLLPSHLV
Coding >Ophio5|5751
ATGAAAGTACTCAGCCTCAACTTCCTCACCTGCGCCGTCAAAGGGTGCAGAACCTCGTCGGCGTCATATCCTCTA
CATCCCAGAGACGCCGAACTGGTGCAGGACGACATCGAAATCAACCCGGACATGCTGATCAACCTGCTACCGCGG
CTAGATTGGGCGGCACTGCGGGAGACGGCCTCGGAGCTGGGATTTCCTGACTTGCCGGAGCAGCCGCCTGCGCTG
GAGCAGCTGCAAGCAGACGAGAGCATGCTACGGGACCTGCACCATCTATTGCTGGAGACGCAGATATCGGAGGGG
AAGCTGGTGTGCGGCAACTGTGGTCATGAGTATGCTGTTAAGGAGGGAATCGCCAACTTTCTCTTGCCGAGCCAC
CTGGTA
Transcript >Ophio5|5751
ATGAAAGTACTCAGCCTCAACTTCCTCACCTGCGCCGTCAAAGGGTGCAGAACCTCGTCGGCGTCATATCCTCTA
CATCCCAGAGACGCCGAACTGGTGCAGGACGACATCGAAATCAACCCGGACATGCTGATCAACCTGCTACCGCGG
CTAGATTGGGCGGCACTGCGGGAGACGGCCTCGGAGCTGGGATTTCCTGACTTGCCGGAGCAGCCGCCTGCGCTG
GAGCAGCTGCAAGCAGACGAGAGCATGCTACGGGACCTGCACCATCTATTGCTGGAGACGCAGATATCGGAGGGG
AAGCTGGTGTGCGGCAACTGTGGTCATGAGTATGCTGTTAAGGAGGGAATCGCCAACTTTCTCTTGCCGAGCCAC
CTGGTATAG
Gene >Ophio5|5751
ATGAAAGTACTCAGCCTCAACTTCCTCACCTGCGCCGTCAAAGGGTGCAGAACCTCGTCGGCGTCATATCCTCTA
CATCCCAGAGACGCCGAACTGGTGCAGGACGACATCGAAATCAACCCGGACATGCTGATCAACCTGCTACCGCGG
CTAGATTGGGCGGCACTGCGGGAGACGGCCTCGGAGGTGCGTTGCGAACCCTTTCCTTCAGGGACAAAAAAAAAA
AAAAAAACCAAACACAGCGGATGCTCTTTTCTCTGGTGAAAAAAAGGCGACGAACGCTTTCTCGTCTAGTTTGAG
ACGAACGGATTGGTAGCCGCGAGCTCAACGCTGACGCGGCGCAGCTGGGATTTCCTGACTTGCCGGAGCAGCCGC
CTGCGCTGGAGCAGCTGCAAGCAGACGAGAGCATGCTACGGGACCTGCACCATCTATTGCTGGAGACGCAGATAT
CGGAGGGGAAGCTGGTGTGCGGCAACTGTGGTCATGAGTATGCTGTTAAGGAGGGAATCGCCAACTTTCTCTTGC
CGAGCCACCTGGTATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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