© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5738 |
| Gene name | |
| Location | scaffold_48:18250..19336 |
| Strand | + |
| Gene length (bp) | 1086 |
| Transcript length (bp) | 951 |
| Coding sequence length (bp) | 948 |
| Protein length (aa) | 316 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10277 | Frag1 | Frag1/DRAM/Sfk1 family | 4.0E-40 | 46 | 261 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7U1|SFK1_SCHPO | Protein sfk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfk1 PE=3 SV=1 | 48 | 316 | 9.0E-18 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 46 | 68 | 22 |
| 2 | 100 | 117 | 17 |
| 3 | 138 | 160 | 22 |
| 4 | 170 | 189 | 19 |
| 5 | 206 | 228 | 22 |
| 6 | 238 | 260 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5738 MGTSISPSQTRKWSDRFTVRRASDQTSQPSLASDPARLPAGRYISYWMLPLFSSLVWLGMLLGMLIYWTVHENSP HLPSMSVNANVAFISDIGAFRLKPLFIAGSTVTAVTLNLAFIAERWLRHNGRLLPNGSFTEKLLSALTIFFAVVG AAGLILLTIFDTWMHHEKHNGFLVIFIGGYLASSVSTCWEYQRLGIKNRQHPLLRISFWVKLAFFSTELVLVILF GSLSAAHQQDAAAIFEWIVAFIFTFYIISFVIDLWPAVNTKNPANRFEKPLSINSSLPPSAPPSVSPSAPPSYSQ STESALIQSDASSSYP |
| Coding | >Ophio5|5738 ATGGGCACAAGTATCAGCCCTTCGCAGACGCGCAAATGGAGCGATCGCTTCACTGTCCGACGTGCCTCGGATCAG ACATCACAGCCATCGCTGGCCTCGGACCCGGCTCGGCTCCCCGCCGGTCGCTACATATCCTACTGGATGCTCCCG CTCTTCTCCAGCCTCGTCTGGCTCGGCATGCTCCTCGGCATGCTCATCTACTGGACAGTCCACGAAAACAGTCCC CATCTGCCGTCCATGTCCGTCAACGCAAACGTCGCCTTCATCAGCGACATTGGCGCCTTTCGCCTCAAGCCGCTC TTCATCGCCGGCTCTACCGTCACCGCCGTCACTCTCAACCTCGCCTTCATCGCTGAGCGATGGCTTCGTCATAAC GGCCGTTTGCTGCCCAATGGATCCTTTACCGAGAAGCTACTCTCTGCCCTGACAATCTTCTTCGCCGTCGTTGGT GCCGCCGGCCTCATCCTCCTCACCATCTTCGACACTTGGATGCACCATGAGAAGCACAATGGCTTTCTTGTCATC TTCATCGGAGGCTACCTGGCCTCGTCTGTCAGCACCTGCTGGGAGTACCAGCGTCTCGGCATCAAGAACCGCCAA CACCCCCTCCTCCGAATCTCCTTTTGGGTCAAACTCGCCTTCTTCTCTACCGAGCTCGTCCTCGTCATCCTTTTC GGCTCCCTCTCCGCAGCCCACCAGCAAGATGCCGCCGCCATCTTCGAGTGGATCGTCGCCTTCATCTTCACATTC TACATCATCTCCTTCGTCATCGACCTCTGGCCCGCCGTCAACACCAAGAACCCGGCCAATCGCTTCGAAAAGCCA CTGTCTATCAATTCCTCCCTTCCCCCCAGTGCACCCCCCAGCGTCTCCCCTAGTGCCCCGCCCAGCTACTCGCAA AGCACCGAGTCGGCCTTGATACAGTCTGATGCTTCCAGCAGCTATCCT |
| Transcript | >Ophio5|5738 ATGGGCACAAGTATCAGCCCTTCGCAGACGCGCAAATGGAGCGATCGCTTCACTGTCCGACGTGCCTCGGATCAG ACATCACAGCCATCGCTGGCCTCGGACCCGGCTCGGCTCCCCGCCGGTCGCTACATATCCTACTGGATGCTCCCG CTCTTCTCCAGCCTCGTCTGGCTCGGCATGCTCCTCGGCATGCTCATCTACTGGACAGTCCACGAAAACAGTCCC CATCTGCCGTCCATGTCCGTCAACGCAAACGTCGCCTTCATCAGCGACATTGGCGCCTTTCGCCTCAAGCCGCTC TTCATCGCCGGCTCTACCGTCACCGCCGTCACTCTCAACCTCGCCTTCATCGCTGAGCGATGGCTTCGTCATAAC GGCCGTTTGCTGCCCAATGGATCCTTTACCGAGAAGCTACTCTCTGCCCTGACAATCTTCTTCGCCGTCGTTGGT GCCGCCGGCCTCATCCTCCTCACCATCTTCGACACTTGGATGCACCATGAGAAGCACAATGGCTTTCTTGTCATC TTCATCGGAGGCTACCTGGCCTCGTCTGTCAGCACCTGCTGGGAGTACCAGCGTCTCGGCATCAAGAACCGCCAA CACCCCCTCCTCCGAATCTCCTTTTGGGTCAAACTCGCCTTCTTCTCTACCGAGCTCGTCCTCGTCATCCTTTTC GGCTCCCTCTCCGCAGCCCACCAGCAAGATGCCGCCGCCATCTTCGAGTGGATCGTCGCCTTCATCTTCACATTC TACATCATCTCCTTCGTCATCGACCTCTGGCCCGCCGTCAACACCAAGAACCCGGCCAATCGCTTCGAAAAGCCA CTGTCTATCAATTCCTCCCTTCCCCCCAGTGCACCCCCCAGCGTCTCCCCTAGTGCCCCGCCCAGCTACTCGCAA AGCACCGAGTCGGCCTTGATACAGTCTGATGCTTCCAGCAGCTATCCTTAA |
| Gene | >Ophio5|5738 ATGGGCACAAGTATCAGCCCTTCGCAGACGCGCAAATGGAGCGATCGCTTCACTGTCCGACGTGCCTCGGATCAG ACATCACAGCCATCGCTGGCCTCGGACCCGGCTCGGCTCCCCGCCGGTCGCTACATATCCTACTGGGTGGGTTGA GATACTATGCAGAGAGAAAACAGAGTGAGAGACTCTTCTCTTGCCGCCTTCCTCTGACAGCTTCTAGATGCTCCC GCTCTTCTCCAGCCTCGTCTGGCTCGGCATGCTCCTCGGCATGCTCATCTACTGGACAGTCCACGAAAACAGTCC CCATCTGCCGTCCATGTCCGTCAACGCAAACGTCGCCTTCATCAGCGACATTGGCGCCTTTCGCCTCAAGCCGCT CTTCATCGCCGGCTCTACCGTCACCGCCGTCACTCTCAACCTCGCCTTCATCGCTGAGCGATGGCTTCGTCATAA CGGCCGTTTGCTGCCCAATGGATCCTTTACCGAGAAGCTACTCTCTGCCCTGACAATCTTCTTCGCCGTCGTTGG TGCCGCCGGCCTCATCCTCCTCACCATCTTCGACACTTGGATGCACCATGAGAAGCACAATGGCTTTCTTGTCAT CTTCATCGGAGGCTACCTGGCCTCGTCTGTCAGCACCTGCTGGGAGTACCAGCGTCTCGGCATCAGTCAGTCTCG TCTTGTTTGCCTTGGCTTTCACTTGTTTGCTAACTGCCTCCCTTACCAGAGAACCGCCAACACCCCCTCCTCCGA ATCTCCTTTTGGGTCAAACTCGCCTTCTTCTCTACCGAGCTCGTCCTCGTCATCCTTTTCGGCTCCCTCTCCGCA GCCCACCAGCAAGATGCCGCCGCCATCTTCGAGTGGATCGTCGCCTTCATCTTCACATTCTACATCATCTCCTTC GTCATCGACCTCTGGCCCGCCGTCAACACCAAGAACCCGGCCAATCGCTTCGAAAAGCCACTGTCTATCAATTCC TCCCTTCCCCCCAGTGCACCCCCCAGCGTCTCCCCTAGTGCCCCGCCCAGCTACTCGCAAAGCACCGAGTCGGCC TTGATACAGTCTGATGCTTCCAGCAGCTATCCTTAA |