© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5731 |
| Gene name | |
| Location | scaffold_48:1163..3086 |
| Strand | - |
| Gene length (bp) | 1923 |
| Transcript length (bp) | 1731 |
| Coding sequence length (bp) | 1728 |
| Protein length (aa) | 576 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12929 | Mid1 | Stretch-activated Ca2+-permeable channel component | 3.7E-78 | 138 | 439 |
| PF12929 | Mid1 | Stretch-activated Ca2+-permeable channel component | 1.3E-28 | 450 | 544 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10063|EHS1_SCHPO | Calcium influx-promoting protein ehs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ehs1 PE=3 SV=1 | 69 | 540 | 8.0E-37 |
| sp|P41821|MID1_YEAST | Stretch-activated cation channel MID1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MID1 PE=1 SV=1 | 214 | 545 | 1.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0098703 | calcium ion import across plasma membrane | Yes |
| GO:0005262 | calcium channel activity | Yes |
| GO:0006810 | transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0055085 | transmembrane transport | No |
| GO:0005215 | transporter activity | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0022803 | passive transmembrane transporter activity | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0015085 | calcium ion transmembrane transporter activity | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0005216 | ion channel activity | No |
| GO:0008150 | biological_process | No |
| GO:0098657 | import into cell | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0005261 | cation channel activity | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0006816 | calcium ion transport | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0098659 | inorganic cation import across plasma membrane | No |
| GO:0030001 | metal ion transport | No |
| GO:0099587 | inorganic ion import across plasma membrane | No |
| GO:0098739 | import across plasma membrane | No |
| GO:0097553 | calcium ion transmembrane import into cytosol | No |
| GO:0070588 | calcium ion transmembrane transport | No |
| GO:0009987 | cellular process | No |
| GO:0015267 | channel activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 38 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 56.53 | 30.68 | 82.37 |
| CcL | In ants, during behavior modification | 66.29 | 36.27 | 96.30 |
| CcD | In ants, recently dead | 65.29 | 35.64 | 94.94 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.532955 | no |
| SC16a | CcD | 0.575419 | no |
| CcL | CcD | 0.959564 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5731 MVSTTKRLAPSWATSLAPSWATSLALLLLVASASVSCSPSHDGVTPATADMALAQSDILGRTPTYESDFFALDRS IVGRATTVVSTLTKNQAVALNLQPGSTACYMVQREAMFGDDGDGNGRPGRNPSQPNAEARSPTLYLSANTCLQPS HASSDSKKKTGTPQLILAVSNSSETACKNSATLPKDGEGKTFTEGAVMFSLNMTGDLFVGITAPNVSSDFRGIYN FELGASPDDFLHRYEGEDRSELLWMDSDSTSAILATRNLTEDESEITRVMNQALPYELYVSNDEALSSAGLRHSY CGLRNTAQIRASQSSNSEANSPVKTVVTRRGPGGFPKQQFHFVSLNASSRYTGILVKKPREDGLGKRQDNAADSG PGSVVFRATEFETITGSSCKIVTDLEFCDEIQYAVPGNDRRFNNTALGKAYDDYARKMYANFEKPTRSGYAPSVC RDFPNGTQLAPEVRGPLEQRPPTNSSRNRFIDEEIQPGPYKEILPCEDLCYEVVQSCPARIGFKCPRPEFPGFDT SYGRRDQDPATVSCNFAGEARTPISGGKGLLPELGWAGGVSLVVAAAQVLR |
| Coding | >Ophio5|5731 ATGGTGTCGACGACGAAGCGGCTGGCGCCATCGTGGGCGACCTCGCTGGCGCCATCGTGGGCGACCTCGCTGGCG CTGCTGCTTCTCGTCGCCTCGGCCTCGGTGTCTTGTTCGCCATCACACGATGGCGTCACGCCGGCGACAGCTGAC ATGGCGCTCGCACAGTCCGACATACTTGGCCGCACGCCGACATACGAGTCCGATTTCTTCGCCCTGGACCGCAGT ATCGTCGGACGCGCGACGACGGTCGTCTCGACGCTGACCAAGAACCAGGCCGTGGCGCTGAATTTACAGCCCGGG TCGACGGCGTGCTACATGGTGCAGAGGGAGGCCATGTTCGGCGACGACGGAGACGGTAATGGCCGGCCAGGGCGC AACCCGTCGCAGCCCAACGCCGAGGCGAGGTCCCCGACGCTCTACCTCTCGGCAAACACCTGTCTGCAGCCGAGC CACGCGTCATCGGATAGCAAGAAGAAGACGGGTACGCCGCAGCTGATATTGGCCGTATCCAATTCGAGCGAGACG GCGTGCAAAAACTCGGCGACGCTACCCAAGGATGGCGAGGGCAAGACTTTCACCGAGGGTGCCGTCATGTTCAGT CTGAATATGACGGGCGACCTCTTCGTCGGCATCACGGCGCCAAACGTCTCGTCTGACTTCCGCGGCATCTACAAC TTCGAGCTGGGTGCCTCGCCCGACGACTTTCTGCATCGGTACGAGGGCGAAGACCGGTCCGAGCTACTATGGATG GACAGCGACTCGACGTCGGCCATCCTCGCCACCCGCAACCTAACCGAGGACGAGTCCGAGATCACGCGCGTCATG AATCAGGCGCTGCCCTACGAATTGTACGTCAGCAACGACGAGGCACTCTCCAGCGCCGGGCTGAGACACTCGTAC TGTGGGCTACGAAACACGGCTCAGATCCGGGCGAGCCAGTCGAGCAACAGCGAAGCCAACAGCCCCGTCAAGACA GTCGTCACCCGCAGGGGACCTGGGGGGTTCCCCAAGCAGCAATTCCACTTTGTCTCCCTCAATGCCAGCTCCAGG TACACGGGCATCCTGGTCAAGAAACCGCGTGAAGACGGCTTGGGCAAGAGGCAGGATAATGCGGCGGATTCCGGC CCGGGAAGCGTTGTCTTCCGAGCGACTGAGTTCGAGACCATCACCGGATCCAGCTGTAAGATCGTGACGGACCTC GAGTTCTGCGACGAGATCCAGTACGCGGTGCCGGGCAATGACCGGCGCTTCAACAACACGGCGCTGGGCAAAGCT TACGACGACTACGCCCGAAAGATGTACGCCAACTTTGAAAAGCCTACAAGAAGTGGCTATGCACCGTCAGTATGC CGCGATTTTCCCAACGGCACGCAGCTGGCTCCGGAAGTGCGAGGGCCGTTGGAGCAGAGGCCTCCTACCAACTCG TCTCGCAACCGGTTCATCGACGAGGAGATACAGCCGGGGCCATACAAGGAGATCCTGCCGTGCGAGGACCTCTGC TACGAGGTGGTGCAGAGCTGTCCGGCCAGGATCGGCTTCAAGTGTCCGCGTCCCGAGTTTCCGGGCTTCGACACA AGCTACGGGCGGAGAGACCAGGATCCGGCGACGGTGTCGTGCAACTTTGCCGGCGAGGCGCGGACGCCGATAAGT GGTGGCAAGGGACTTCTTCCCGAGCTGGGGTGGGCTGGGGGCGTTTCTCTCGTCGTGGCGGCGGCGCAGGTGTTG AGG |
| Transcript | >Ophio5|5731 ATGGTGTCGACGACGAAGCGGCTGGCGCCATCGTGGGCGACCTCGCTGGCGCCATCGTGGGCGACCTCGCTGGCG CTGCTGCTTCTCGTCGCCTCGGCCTCGGTGTCTTGTTCGCCATCACACGATGGCGTCACGCCGGCGACAGCTGAC ATGGCGCTCGCACAGTCCGACATACTTGGCCGCACGCCGACATACGAGTCCGATTTCTTCGCCCTGGACCGCAGT ATCGTCGGACGCGCGACGACGGTCGTCTCGACGCTGACCAAGAACCAGGCCGTGGCGCTGAATTTACAGCCCGGG TCGACGGCGTGCTACATGGTGCAGAGGGAGGCCATGTTCGGCGACGACGGAGACGGTAATGGCCGGCCAGGGCGC AACCCGTCGCAGCCCAACGCCGAGGCGAGGTCCCCGACGCTCTACCTCTCGGCAAACACCTGTCTGCAGCCGAGC CACGCGTCATCGGATAGCAAGAAGAAGACGGGTACGCCGCAGCTGATATTGGCCGTATCCAATTCGAGCGAGACG GCGTGCAAAAACTCGGCGACGCTACCCAAGGATGGCGAGGGCAAGACTTTCACCGAGGGTGCCGTCATGTTCAGT CTGAATATGACGGGCGACCTCTTCGTCGGCATCACGGCGCCAAACGTCTCGTCTGACTTCCGCGGCATCTACAAC TTCGAGCTGGGTGCCTCGCCCGACGACTTTCTGCATCGGTACGAGGGCGAAGACCGGTCCGAGCTACTATGGATG GACAGCGACTCGACGTCGGCCATCCTCGCCACCCGCAACCTAACCGAGGACGAGTCCGAGATCACGCGCGTCATG AATCAGGCGCTGCCCTACGAATTGTACGTCAGCAACGACGAGGCACTCTCCAGCGCCGGGCTGAGACACTCGTAC TGTGGGCTACGAAACACGGCTCAGATCCGGGCGAGCCAGTCGAGCAACAGCGAAGCCAACAGCCCCGTCAAGACA GTCGTCACCCGCAGGGGACCTGGGGGGTTCCCCAAGCAGCAATTCCACTTTGTCTCCCTCAATGCCAGCTCCAGG TACACGGGCATCCTGGTCAAGAAACCGCGTGAAGACGGCTTGGGCAAGAGGCAGGATAATGCGGCGGATTCCGGC CCGGGAAGCGTTGTCTTCCGAGCGACTGAGTTCGAGACCATCACCGGATCCAGCTGTAAGATCGTGACGGACCTC GAGTTCTGCGACGAGATCCAGTACGCGGTGCCGGGCAATGACCGGCGCTTCAACAACACGGCGCTGGGCAAAGCT TACGACGACTACGCCCGAAAGATGTACGCCAACTTTGAAAAGCCTACAAGAAGTGGCTATGCACCGTCAGTATGC CGCGATTTTCCCAACGGCACGCAGCTGGCTCCGGAAGTGCGAGGGCCGTTGGAGCAGAGGCCTCCTACCAACTCG TCTCGCAACCGGTTCATCGACGAGGAGATACAGCCGGGGCCATACAAGGAGATCCTGCCGTGCGAGGACCTCTGC TACGAGGTGGTGCAGAGCTGTCCGGCCAGGATCGGCTTCAAGTGTCCGCGTCCCGAGTTTCCGGGCTTCGACACA AGCTACGGGCGGAGAGACCAGGATCCGGCGACGGTGTCGTGCAACTTTGCCGGCGAGGCGCGGACGCCGATAAGT GGTGGCAAGGGACTTCTTCCCGAGCTGGGGTGGGCTGGGGGCGTTTCTCTCGTCGTGGCGGCGGCGCAGGTGTTG AGGTAG |
| Gene | >Ophio5|5731 ATGGTGTCGACGACGAAGCGGCTGGCGCCATCGTGGGCGACCTCGCTGGCGCCATCGTGGGCGACCTCGCTGGCG CTGCTGCTTCTCGTCGCCTCGGCCTCGGTGTCTTGTTCGCCATCACACGATGGCGTCACGCCGGCGACAGCTGAC ATGGCGCTCGCACAGTCCGACATACTTGGCCGCACGCCGACATACGAGTCCGATTTCTTCGCCCTGGACCGCAGT ATCGTCGGACGCGCGACGACGGTCGTCTCGACGCTGACCAAGAACCAGGCCGTGGCGCTGAATTTACAGCCCGGG TCGACGGCGTGCTACATGGTGCAGAGGGAGGCCATGTTCGGCGACGACGGAGACGGTAATGGCCGGCCAGGGCGC AACCCGTCGCAGCCCAACGCCGAGGCGAGGTCCCCGACGCTCTACCTCTCGGCAAACACCTGTCTGCAGCCGAGC CACGCGTCATCGGATAGCAAGAAGAAGACGGGTACGCCGCAGCTGATATTGGCCGTATCCAATTCGAGCGAGACG GCGTGCAAAAACTCGGCGACGCTACCCAAGGATGGCGAGGGCAAGACTTTCACCGAGGGTGCCGTCATGTTCAGT CTGAATATGACGGGCGACCTCTTCGTCGGCATCACGGCGCCAAACGTCTCGTCTGACTTCCGCGGCATCTACAAC TTCGAGCTGGGTGCCTCGCCCGACGACTTTCTGCATCGGTACGAGGGCGAAGACCGGTCCGAGCTACTATGGATG GACAGCGACTCGACGTCGGCCATCCTCGCCACCCGCAACCTAACCGAGGACGAGTCCGAGATCACGCGCGTCATG AATCAGGCGCTGCCCTACGAATTGTACGTCAGCAACGACGAGGCACTCTCCAGCGCCGGGCTGAGACACTCGTAC TGTGGGCTACGAAACACGGCTCAGATCCGGGCGAGCCAGTCGAGCAACAGCGAAGCCAACAGCCCCGTCAAGACA GTCGTCACCCGCAGGGGACCTGGGGGGTTCCCCAAGCAGCAATTCCACTTTGTCTCCCTCAATGCCAGCTCCAGG TACACGGGCATCCTGGTCAAGAAACCGCGTGAAGACGGCTTGGGCAAGAGGCAGGATAATGCGGCGGATTCCGGC CCGGGAAGCGTTGTCTTCCGAGCGACTGAGTTCGAGACCATCACCGGTAGGTTCGGCGCATCTCGCTGTCTCCGC AAGCAAGCAGCTGACGATGGAACAGGATCCAGCTGTAAGATCGTGACGGACCTCGAGTTCTGCGACGAGATCCAG TACGCGGTGCCGGGCAATGACCGGCGCTTCAACAACACGGCGCTGGGCAAAGCTTACGACGACTACGCCCGAAAG ATGTACGCCAACTTTGAAAAGGTGATGATGCAGATACCGTGCGAGGCGCCGCGGACGTCCATGTACTCACTCGTC CGCACCTGCGAGGACTGCAAGGTAGCCTACAAGAAGTGGCTATGCACCGTCAGTATGCCGCGGTGCGAGGACTTT GCCAGTAGCAAAAACCGGTTCGCGCTGGCACGCAACGCGGCACAAGATTTTCCCAACGGCACGCAGCTGGCTCCG GAAGTGCGAGGGCCGTTGGAGCAGAGGCCTCCTACCAACTCGTCTCGCAACCGGTTCATCGACGAGGAGATACAG CCGGGGCCATACAAGGAGATCCTGCCGTGCGAGGACCTCTGCTACGAGGTGGTGCAGAGCTGTCCGGCCAGGATC GGCTTCAAGTGTCCGCGTCCCGAGTTTCCGGGCTTCGACACAAGCTACGGGCGGAGAGACCAGGATCCGGCGACG GTGTCGTGCAACTTTGCCGGCGAGGCGCGGACGCCGATAAGTGGTGGCAAGGGACTTCTTCCCGAGCTGGGGTGG GCTGGGGGCGTTTCTCTCGTCGTGGCGGCGGCGCAGGTGTTGAGGTAG |