© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5719 |
| Gene name | |
| Location | scaffold_478:2888..4034 |
| Strand | - |
| Gene length (bp) | 1146 |
| Transcript length (bp) | 1146 |
| Coding sequence length (bp) | 1143 |
| Protein length (aa) | 381 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01476 | LysM | LysM domain | 4.7E-05 | 83 | 130 |
| PF01476 | LysM | LysM domain | 1.7E-04 | 214 | 256 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 4.39 | 1.09 | 7.69 |
| CcL | In ants, during behavior modification | 1.77 | 0.16 | 3.38 |
| CcD | In ants, recently dead | 1.74 | 0.02 | 3.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.029965 | yes |
| SC16a | CcD | 0.038524 | yes |
| CcL | CcD | 0.981573 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5719 MASMKHCIFLVGSAQLLLGALVNAHLVPRATRSLADANVAAPVETTNFAAGPGASQEGKSGPSLGGEGESGASRG GNQKLCPYQVKLEEHCWGIKTDFNITLDQFYEFNPEVNGDAKNCDLAVGQTLQLPCIDASPARQPVVSQDAPCTD TFKTEEAGTCRSIVLNKFISFRNLKDWNPQLQANEAGECDIPAGTEVCISKSEKKITCTKEYSAKSDDVCHEIAA AQGITVNLLSGMNPNIIDNYCLIHPNQKLCVAAEGFSTEKTAATGNATQPLRAEDGQEAGQGAGDKSGQQETVSI VKAIEQFVAPFAGNVTDPNANPDPKLLEPIKQKVEQFMKSGSTKSSPDDSGLVKSVELGLKEEGMAGAAGNTKRS FAWTLF |
| Coding | >Ophio5|5719 ATGGCGTCTATGAAACACTGCATCTTCCTCGTCGGCAGCGCCCAGCTACTGCTCGGAGCCTTGGTCAACGCCCAC CTCGTCCCTCGGGCCACACGGTCACTCGCAGATGCGAATGTCGCCGCTCCTGTGGAGACGACCAACTTTGCTGCA GGACCCGGCGCCTCGCAAGAGGGAAAGTCAGGGCCTTCGCTGGGAGGAGAAGGAGAGTCGGGAGCCTCGCGAGGA GGAAACCAGAAACTCTGCCCTTACCAGGTCAAGTTGGAGGAGCACTGTTGGGGAATCAAGACGGATTTCAACATC ACACTGGACCAGTTCTACGAATTCAACCCGGAAGTTAACGGGGATGCGAAAAACTGCGACCTAGCAGTTGGACAA ACACTTCAGCTCCCCTGCATAGACGCGTCGCCGGCGAGGCAGCCTGTCGTAAGCCAAGATGCCCCTTGCACAGAC ACGTTCAAGACCGAGGAGGCAGGGACCTGCAGGTCCATTGTCCTCAACAAGTTCATCAGTTTCAGGAACCTGAAG GATTGGAACCCCCAACTCCAGGCCAACGAGGCTGGTGAATGCGATATTCCGGCCGGCACCGAAGTGTGCATCTCC AAGTCCGAAAAGAAGATCACTTGCACCAAGGAATACTCGGCGAAGTCAGACGACGTATGTCACGAGATCGCCGCG GCCCAGGGCATCACCGTGAACCTGCTCAGCGGCATGAACCCGAACATCATCGACAACTACTGCCTAATTCATCCG AACCAGAAGCTCTGCGTCGCCGCCGAAGGCTTCTCGACGGAAAAGACGGCTGCGACCGGCAACGCCACGCAGCCG CTGCGCGCGGAAGATGGCCAAGAAGCTGGCCAGGGCGCTGGCGACAAGTCGGGCCAGCAGGAGACCGTCAGCATT GTCAAGGCCATCGAGCAGTTCGTCGCTCCGTTCGCCGGCAACGTGACCGATCCCAACGCAAACCCGGACCCCAAG CTGTTGGAGCCCATCAAGCAGAAGGTCGAGCAGTTCATGAAGAGCGGCAGCACGAAGTCCAGCCCCGACGATTCG GGACTTGTCAAGTCTGTCGAATTGGGCTTGAAGGAGGAGGGCATGGCCGGTGCGGCTGGCAACACCAAGAGGTCC TTTGCCTGGACTCTCTTC |
| Transcript | >Ophio5|5719 ATGGCGTCTATGAAACACTGCATCTTCCTCGTCGGCAGCGCCCAGCTACTGCTCGGAGCCTTGGTCAACGCCCAC CTCGTCCCTCGGGCCACACGGTCACTCGCAGATGCGAATGTCGCCGCTCCTGTGGAGACGACCAACTTTGCTGCA GGACCCGGCGCCTCGCAAGAGGGAAAGTCAGGGCCTTCGCTGGGAGGAGAAGGAGAGTCGGGAGCCTCGCGAGGA GGAAACCAGAAACTCTGCCCTTACCAGGTCAAGTTGGAGGAGCACTGTTGGGGAATCAAGACGGATTTCAACATC ACACTGGACCAGTTCTACGAATTCAACCCGGAAGTTAACGGGGATGCGAAAAACTGCGACCTAGCAGTTGGACAA ACACTTCAGCTCCCCTGCATAGACGCGTCGCCGGCGAGGCAGCCTGTCGTAAGCCAAGATGCCCCTTGCACAGAC ACGTTCAAGACCGAGGAGGCAGGGACCTGCAGGTCCATTGTCCTCAACAAGTTCATCAGTTTCAGGAACCTGAAG GATTGGAACCCCCAACTCCAGGCCAACGAGGCTGGTGAATGCGATATTCCGGCCGGCACCGAAGTGTGCATCTCC AAGTCCGAAAAGAAGATCACTTGCACCAAGGAATACTCGGCGAAGTCAGACGACGTATGTCACGAGATCGCCGCG GCCCAGGGCATCACCGTGAACCTGCTCAGCGGCATGAACCCGAACATCATCGACAACTACTGCCTAATTCATCCG AACCAGAAGCTCTGCGTCGCCGCCGAAGGCTTCTCGACGGAAAAGACGGCTGCGACCGGCAACGCCACGCAGCCG CTGCGCGCGGAAGATGGCCAAGAAGCTGGCCAGGGCGCTGGCGACAAGTCGGGCCAGCAGGAGACCGTCAGCATT GTCAAGGCCATCGAGCAGTTCGTCGCTCCGTTCGCCGGCAACGTGACCGATCCCAACGCAAACCCGGACCCCAAG CTGTTGGAGCCCATCAAGCAGAAGGTCGAGCAGTTCATGAAGAGCGGCAGCACGAAGTCCAGCCCCGACGATTCG GGACTTGTCAAGTCTGTCGAATTGGGCTTGAAGGAGGAGGGCATGGCCGGTGCGGCTGGCAACACCAAGAGGTCC TTTGCCTGGACTCTCTTCTAA |
| Gene | >Ophio5|5719 ATGGCGTCTATGAAACACTGCATCTTCCTCGTCGGCAGCGCCCAGCTACTGCTCGGAGCCTTGGTCAACGCCCAC CTCGTCCCTCGGGCCACACGGTCACTCGCAGATGCGAATGTCGCCGCTCCTGTGGAGACGACCAACTTTGCTGCA GGACCCGGCGCCTCGCAAGAGGGAAAGTCAGGGCCTTCGCTGGGAGGAGAAGGAGAGTCGGGAGCCTCGCGAGGA GGAAACCAGAAACTCTGCCCTTACCAGGTCAAGTTGGAGGAGCACTGTTGGGGAATCAAGACGGATTTCAACATC ACACTGGACCAGTTCTACGAATTCAACCCGGAAGTTAACGGGGATGCGAAAAACTGCGACCTAGCAGTTGGACAA ACACTTCAGCTCCCCTGCATAGACGCGTCGCCGGCGAGGCAGCCTGTCGTAAGCCAAGATGCCCCTTGCACAGAC ACGTTCAAGACCGAGGAGGCAGGGACCTGCAGGTCCATTGTCCTCAACAAGTTCATCAGTTTCAGGAACCTGAAG GATTGGAACCCCCAACTCCAGGCCAACGAGGCTGGTGAATGCGATATTCCGGCCGGCACCGAAGTGTGCATCTCC AAGTCCGAAAAGAAGATCACTTGCACCAAGGAATACTCGGCGAAGTCAGACGACGTATGTCACGAGATCGCCGCG GCCCAGGGCATCACCGTGAACCTGCTCAGCGGCATGAACCCGAACATCATCGACAACTACTGCCTAATTCATCCG AACCAGAAGCTCTGCGTCGCCGCCGAAGGCTTCTCGACGGAAAAGACGGCTGCGACCGGCAACGCCACGCAGCCG CTGCGCGCGGAAGATGGCCAAGAAGCTGGCCAGGGCGCTGGCGACAAGTCGGGCCAGCAGGAGACCGTCAGCATT GTCAAGGCCATCGAGCAGTTCGTCGCTCCGTTCGCCGGCAACGTGACCGATCCCAACGCAAACCCGGACCCCAAG CTGTTGGAGCCCATCAAGCAGAAGGTCGAGCAGTTCATGAAGAGCGGCAGCACGAAGTCCAGCCCCGACGATTCG GGACTTGTCAAGTCTGTCGAATTGGGCTTGAAGGAGGAGGGCATGGCCGGTGCGGCTGGCAACACCAAGAGGTCC TTTGCCTGGACTCTCTTCTAA |