Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5719
Gene name
Locationscaffold_478:2888..4034
Strand-
Gene length (bp)1146
Transcript length (bp)1146
Coding sequence length (bp)1143
Protein length (aa) 381

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 4.7E-05 83 130
PF01476 LysM LysM domain 1.7E-04 214 256

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 25 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5719
MASMKHCIFLVGSAQLLLGALVNAHLVPRATRSLADANVAAPVETTNFAAGPGASQEGKSGPSLGGEGESGASRG
GNQKLCPYQVKLEEHCWGIKTDFNITLDQFYEFNPEVNGDAKNCDLAVGQTLQLPCIDASPARQPVVSQDAPCTD
TFKTEEAGTCRSIVLNKFISFRNLKDWNPQLQANEAGECDIPAGTEVCISKSEKKITCTKEYSAKSDDVCHEIAA
AQGITVNLLSGMNPNIIDNYCLIHPNQKLCVAAEGFSTEKTAATGNATQPLRAEDGQEAGQGAGDKSGQQETVSI
VKAIEQFVAPFAGNVTDPNANPDPKLLEPIKQKVEQFMKSGSTKSSPDDSGLVKSVELGLKEEGMAGAAGNTKRS
FAWTLF
Coding >Ophio5|5719
ATGGCGTCTATGAAACACTGCATCTTCCTCGTCGGCAGCGCCCAGCTACTGCTCGGAGCCTTGGTCAACGCCCAC
CTCGTCCCTCGGGCCACACGGTCACTCGCAGATGCGAATGTCGCCGCTCCTGTGGAGACGACCAACTTTGCTGCA
GGACCCGGCGCCTCGCAAGAGGGAAAGTCAGGGCCTTCGCTGGGAGGAGAAGGAGAGTCGGGAGCCTCGCGAGGA
GGAAACCAGAAACTCTGCCCTTACCAGGTCAAGTTGGAGGAGCACTGTTGGGGAATCAAGACGGATTTCAACATC
ACACTGGACCAGTTCTACGAATTCAACCCGGAAGTTAACGGGGATGCGAAAAACTGCGACCTAGCAGTTGGACAA
ACACTTCAGCTCCCCTGCATAGACGCGTCGCCGGCGAGGCAGCCTGTCGTAAGCCAAGATGCCCCTTGCACAGAC
ACGTTCAAGACCGAGGAGGCAGGGACCTGCAGGTCCATTGTCCTCAACAAGTTCATCAGTTTCAGGAACCTGAAG
GATTGGAACCCCCAACTCCAGGCCAACGAGGCTGGTGAATGCGATATTCCGGCCGGCACCGAAGTGTGCATCTCC
AAGTCCGAAAAGAAGATCACTTGCACCAAGGAATACTCGGCGAAGTCAGACGACGTATGTCACGAGATCGCCGCG
GCCCAGGGCATCACCGTGAACCTGCTCAGCGGCATGAACCCGAACATCATCGACAACTACTGCCTAATTCATCCG
AACCAGAAGCTCTGCGTCGCCGCCGAAGGCTTCTCGACGGAAAAGACGGCTGCGACCGGCAACGCCACGCAGCCG
CTGCGCGCGGAAGATGGCCAAGAAGCTGGCCAGGGCGCTGGCGACAAGTCGGGCCAGCAGGAGACCGTCAGCATT
GTCAAGGCCATCGAGCAGTTCGTCGCTCCGTTCGCCGGCAACGTGACCGATCCCAACGCAAACCCGGACCCCAAG
CTGTTGGAGCCCATCAAGCAGAAGGTCGAGCAGTTCATGAAGAGCGGCAGCACGAAGTCCAGCCCCGACGATTCG
GGACTTGTCAAGTCTGTCGAATTGGGCTTGAAGGAGGAGGGCATGGCCGGTGCGGCTGGCAACACCAAGAGGTCC
TTTGCCTGGACTCTCTTC
Transcript >Ophio5|5719
ATGGCGTCTATGAAACACTGCATCTTCCTCGTCGGCAGCGCCCAGCTACTGCTCGGAGCCTTGGTCAACGCCCAC
CTCGTCCCTCGGGCCACACGGTCACTCGCAGATGCGAATGTCGCCGCTCCTGTGGAGACGACCAACTTTGCTGCA
GGACCCGGCGCCTCGCAAGAGGGAAAGTCAGGGCCTTCGCTGGGAGGAGAAGGAGAGTCGGGAGCCTCGCGAGGA
GGAAACCAGAAACTCTGCCCTTACCAGGTCAAGTTGGAGGAGCACTGTTGGGGAATCAAGACGGATTTCAACATC
ACACTGGACCAGTTCTACGAATTCAACCCGGAAGTTAACGGGGATGCGAAAAACTGCGACCTAGCAGTTGGACAA
ACACTTCAGCTCCCCTGCATAGACGCGTCGCCGGCGAGGCAGCCTGTCGTAAGCCAAGATGCCCCTTGCACAGAC
ACGTTCAAGACCGAGGAGGCAGGGACCTGCAGGTCCATTGTCCTCAACAAGTTCATCAGTTTCAGGAACCTGAAG
GATTGGAACCCCCAACTCCAGGCCAACGAGGCTGGTGAATGCGATATTCCGGCCGGCACCGAAGTGTGCATCTCC
AAGTCCGAAAAGAAGATCACTTGCACCAAGGAATACTCGGCGAAGTCAGACGACGTATGTCACGAGATCGCCGCG
GCCCAGGGCATCACCGTGAACCTGCTCAGCGGCATGAACCCGAACATCATCGACAACTACTGCCTAATTCATCCG
AACCAGAAGCTCTGCGTCGCCGCCGAAGGCTTCTCGACGGAAAAGACGGCTGCGACCGGCAACGCCACGCAGCCG
CTGCGCGCGGAAGATGGCCAAGAAGCTGGCCAGGGCGCTGGCGACAAGTCGGGCCAGCAGGAGACCGTCAGCATT
GTCAAGGCCATCGAGCAGTTCGTCGCTCCGTTCGCCGGCAACGTGACCGATCCCAACGCAAACCCGGACCCCAAG
CTGTTGGAGCCCATCAAGCAGAAGGTCGAGCAGTTCATGAAGAGCGGCAGCACGAAGTCCAGCCCCGACGATTCG
GGACTTGTCAAGTCTGTCGAATTGGGCTTGAAGGAGGAGGGCATGGCCGGTGCGGCTGGCAACACCAAGAGGTCC
TTTGCCTGGACTCTCTTCTAA
Gene >Ophio5|5719
ATGGCGTCTATGAAACACTGCATCTTCCTCGTCGGCAGCGCCCAGCTACTGCTCGGAGCCTTGGTCAACGCCCAC
CTCGTCCCTCGGGCCACACGGTCACTCGCAGATGCGAATGTCGCCGCTCCTGTGGAGACGACCAACTTTGCTGCA
GGACCCGGCGCCTCGCAAGAGGGAAAGTCAGGGCCTTCGCTGGGAGGAGAAGGAGAGTCGGGAGCCTCGCGAGGA
GGAAACCAGAAACTCTGCCCTTACCAGGTCAAGTTGGAGGAGCACTGTTGGGGAATCAAGACGGATTTCAACATC
ACACTGGACCAGTTCTACGAATTCAACCCGGAAGTTAACGGGGATGCGAAAAACTGCGACCTAGCAGTTGGACAA
ACACTTCAGCTCCCCTGCATAGACGCGTCGCCGGCGAGGCAGCCTGTCGTAAGCCAAGATGCCCCTTGCACAGAC
ACGTTCAAGACCGAGGAGGCAGGGACCTGCAGGTCCATTGTCCTCAACAAGTTCATCAGTTTCAGGAACCTGAAG
GATTGGAACCCCCAACTCCAGGCCAACGAGGCTGGTGAATGCGATATTCCGGCCGGCACCGAAGTGTGCATCTCC
AAGTCCGAAAAGAAGATCACTTGCACCAAGGAATACTCGGCGAAGTCAGACGACGTATGTCACGAGATCGCCGCG
GCCCAGGGCATCACCGTGAACCTGCTCAGCGGCATGAACCCGAACATCATCGACAACTACTGCCTAATTCATCCG
AACCAGAAGCTCTGCGTCGCCGCCGAAGGCTTCTCGACGGAAAAGACGGCTGCGACCGGCAACGCCACGCAGCCG
CTGCGCGCGGAAGATGGCCAAGAAGCTGGCCAGGGCGCTGGCGACAAGTCGGGCCAGCAGGAGACCGTCAGCATT
GTCAAGGCCATCGAGCAGTTCGTCGCTCCGTTCGCCGGCAACGTGACCGATCCCAACGCAAACCCGGACCCCAAG
CTGTTGGAGCCCATCAAGCAGAAGGTCGAGCAGTTCATGAAGAGCGGCAGCACGAAGTCCAGCCCCGACGATTCG
GGACTTGTCAAGTCTGTCGAATTGGGCTTGAAGGAGGAGGGCATGGCCGGTGCGGCTGGCAACACCAAGAGGTCC
TTTGCCTGGACTCTCTTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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