© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5711 |
| Gene name | |
| Location | scaffold_476:12232..13322 |
| Strand | + |
| Gene length (bp) | 1090 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 858 |
| Protein length (aa) | 286 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 67 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| 2 | 116 | 138 | 22 |
| 3 | 151 | 173 | 22 |
| 4 | 193 | 215 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 49.93 | 24.48 | 75.38 |
| CcL | In ants, during behavior modification | 57.27 | 28.81 | 85.72 |
| CcD | In ants, recently dead | 26.57 | 11.12 | 42.01 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.625390 | no |
| SC16a | CcD | 0.013983 | yes |
| CcL | CcD | 0.003389 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5711 MVSTRSTSSRTASDSRLASGDSSPPMTPPIKVAKRSKRSSRRVASAAGWTHTPSRATLFWMAVSLPLVAWDTVYV LGRPHTMEGGALHWPLWVPYKLYGEVDHIYGWKAFNARNGFTAAQGLLNLVETAMYLFYLGIFVGSPSRRLTGRP AAVAVLVGFSAAVMTLSKTLLYWMNEYYSGFDNIGHNPLLDLVYLWIIPNGAWLVGSSYMIWNLGSDILDGLETA AQMGKRRVGKLHAIGLTPFVRECEAKDKREIVSSSRASWSSPNGRWGYQMIRKDKNEKEKT |
| Coding | >Ophio5|5711 ATGGTTAGCACGCGCTCCACCTCGTCGCGCACCGCCAGCGACAGTCGTCTCGCGTCCGGCGACTCCTCACCTCCT ATGACGCCTCCCATCAAAGTGGCTAAGCGCTCCAAGCGGAGCAGCAGAAGAGTGGCGAGCGCCGCCGGCTGGACG CACACTCCTTCGCGCGCCACGCTCTTCTGGATGGCTGTTTCGCTACCCCTCGTCGCGTGGGATACCGTCTATGTG CTCGGTCGGCCTCATACAATGGAGGGCGGCGCGCTGCATTGGCCGTTGTGGGTGCCGTACAAGCTCTATGGCGAG GTGGATCATATCTACGGCTGGAAGGCATTCAATGCCCGCAATGGCTTTACCGCTGCCCAGGGGTTACTCAACCTC GTTGAGACGGCCATGTATTTGTTCTACTTGGGAATCTTCGTTGGCTCGCCGTCGCGACGATTGACGGGGAGGCCT GCTGCTGTTGCTGTCCTCGTCGGCTTCAGCGCTGCTGTCATGACACTGAGCAAGACATTACTCTACTGGATGAAC GAATACTACAGCGGCTTCGACAACATCGGCCACAACCCTCTACTCGACCTCGTCTACCTCTGGATCATCCCCAAC GGTGCCTGGCTCGTCGGCTCGTCGTACATGATCTGGAATCTCGGCAGCGACATCCTCGACGGACTCGAGACTGCC GCGCAGATGGGGAAAAGAAGGGTGGGGAAATTGCACGCCATCGGTTTGACGCCCTTTGTGAGGGAATGTGAAGCC AAGGATAAAAGGGAAATAGTCTCGTCATCTCGAGCTAGTTGGTCCAGTCCCAACGGACGATGGGGGTATCAGATG ATCAGGAAAGACAAGAATGAAAAAGAAAAGACG |
| Transcript | >Ophio5|5711 ATGGTTAGCACGCGCTCCACCTCGTCGCGCACCGCCAGCGACAGTCGTCTCGCGTCCGGCGACTCCTCACCTCCT ATGACGCCTCCCATCAAAGTGGCTAAGCGCTCCAAGCGGAGCAGCAGAAGAGTGGCGAGCGCCGCCGGCTGGACG CACACTCCTTCGCGCGCCACGCTCTTCTGGATGGCTGTTTCGCTACCCCTCGTCGCGTGGGATACCGTCTATGTG CTCGGTCGGCCTCATACAATGGAGGGCGGCGCGCTGCATTGGCCGTTGTGGGTGCCGTACAAGCTCTATGGCGAG GTGGATCATATCTACGGCTGGAAGGCATTCAATGCCCGCAATGGCTTTACCGCTGCCCAGGGGTTACTCAACCTC GTTGAGACGGCCATGTATTTGTTCTACTTGGGAATCTTCGTTGGCTCGCCGTCGCGACGATTGACGGGGAGGCCT GCTGCTGTTGCTGTCCTCGTCGGCTTCAGCGCTGCTGTCATGACACTGAGCAAGACATTACTCTACTGGATGAAC GAATACTACAGCGGCTTCGACAACATCGGCCACAACCCTCTACTCGACCTCGTCTACCTCTGGATCATCCCCAAC GGTGCCTGGCTCGTCGGCTCGTCGTACATGATCTGGAATCTCGGCAGCGACATCCTCGACGGACTCGAGACTGCC GCGCAGATGGGGAAAAGAAGGGTGGGGAAATTGCACGCCATCGGTTTGACGCCCTTTGTGAGGGAATGTGAAGCC AAGGATAAAAGGGAAATAGTCTCGTCATCTCGAGCTAGTTGGTCCAGTCCCAACGGACGATGGGGGTATCAGATG ATCAGGAAAGACAAGAATGAAAAAGAAAAGACGTGA |
| Gene | >Ophio5|5711 ATGGTTAGCACGCGCTCCACCTCGTCGCGCACCGCCAGCGACAGTCGTCTCGCGTCCGGCGACTCCTCACCTCCT ATGACGCCTCCCATCAAAGTGGCTAAGCGCTCCAAGCGGAGCAGCAGAAGAGTGGCGAGCGCCGCCGGCTGGACG CACACTCCTTCGCGCGCCACGCTCTTCTGGATGGCTGTTTCGCTACCCCTCGTCGCGTGGGATACCGTCTATGTG CTCGGTCGGCCTCATACAATGGAGGGCGGCGCGCTGCATTGGCCGTTGTGGGTGCCGTACAAGCTCTATGGCGAG GTGGATCATATCTACGGCTGGAAGGCATTCAATGCCCGCAATGGCTTTACCGCTGCCCAGGGGTTACTCAACCTC GTTGAGACGGCCATGTATTTGTTCTACTTGGGAATCTTCGTTGGCTCGCCGTCGCGACGATTGACGGGGAGGCCT GCTGCTGTTGCTGTCCTCGTCGGCTTCAGCGCTGCTGTCATGACACTGAGCAAGACATTACTCTACTGTAAGTGA GCCCTACCCTTTGCTCTCCCTGTCTTGCGCTGACGCCCCACATCCAGGGATGAACGAATACTACAGCGGCTTCGA CAACATCGGCCACAACCCTCTACTCGACCTCGTCTACCTCTGGATCATCCCCAAGTCCGTTGTCCATCCCCTCCA CTCCTCCCCCATACAGCGCTGACCTCGGCCTACAGCGGTGCCTGGCTCGTCGGCTCGTCGTACATGATCTGGAAT CTCGGCAGCGACATCCTCGACGGACTCGAGACTGCCGCGTCCCACGCCAAACAAGAATAGGATATCATTCACGGC AAGCATTCATGTCGAGCCGGCCTAGTAGGCAGATGGGGAAAAGAAGGGTGGGGAAATTGCACGCCATCGGTTTGA CGCCCTTTGTGAGGGAATGTGAAGCCAAGGCAAGCCACGCCTCCCAAACGAGACGCCGATCCAGAAGATTGAGAT GAAGTAGGATAAAAGGGAAATAGTCTCGTCATCTCGAGCTAGTTGGTCCAGTCCCAACGGACGATGGGGGTATCA GATGATCAGGAAAGACAAGAATGAAAAAGAAAAGACGTGA |