© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|5710 |
| Gene name | |
| Location | scaffold_476:9532..10156 |
| Strand | - |
| Gene length (bp) | 624 |
| Transcript length (bp) | 567 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 86 | 108 | 22 |
| 4 | 137 | 159 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.49 | 0.0 | 1.54 |
| CcL | In ants, during behavior modification | 0.21 | 0.0 | 0.78 |
| CcD | In ants, recently dead | 0.00 | 0.0 | 0.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 1.0 | no |
| SC16a | CcD | 1.0 | no |
| CcL | CcD | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5710 MGVFTPPPILALAYLGVRLFQIFLLLTPIVGLLGWFTDVTLSRFGFVDIRLLPEGVAIIFIVSIVALGWSLLTVL SMFAVEIDGKLVAVIDFGIMGALIGGVVRLRFIQFSCLVRRFFRTALTDEAFRLCASVKASWILAIIALIMFFVT GVLALLASFLRQPFRFGGKRRRRAVHAEHAGVHVHVDS |
| Coding | >Ophio5|5710 ATGGGCGTCTTTACTCCTCCGCCTATTCTCGCGCTGGCGTACTTAGGAGTACGCTTGTTCCAAATATTCTTGCTC TTGACGCCCATCGTCGGTCTCCTTGGCTGGTTCACCGACGTCACCTTGTCTCGATTTGGCTTCGTCGACATTAGG CTATTGCCAGAGGGAGTGGCCATCATCTTCATCGTCTCCATCGTGGCCCTCGGCTGGTCACTCCTCACAGTCCTC AGCATGTTTGCCGTCGAGATTGACGGCAAACTGGTGGCCGTCATCGACTTCGGCATCATGGGAGCCCTGATCGGC GGCGTCGTCAGACTGCGCTTCATCCAATTTTCCTGTCTCGTCCGTCGCTTCTTTCGCACAGCCCTGACTGACGAA GCATTCCGATTATGTGCCTCGGTTAAGGCTAGCTGGATTCTAGCCATCATTGCCCTCATCATGTTCTTCGTCACG GGTGTGCTGGCCCTCTTGGCCTCATTTCTCAGACAACCCTTCCGCTTTGGTGGCAAGAGACGGAGAAGAGCGGTG CATGCGGAACATGCCGGAGTGCACGTCCACGTCGATTCG |
| Transcript | >Ophio5|5710 ATGGGCGTCTTTACTCCTCCGCCTATTCTCGCGCTGGCGTACTTAGGAGTACGCTTGTTCCAAATATTCTTGCTC TTGACGCCCATCGTCGGTCTCCTTGGCTGGTTCACCGACGTCACCTTGTCTCGATTTGGCTTCGTCGACATTAGG CTATTGCCAGAGGGAGTGGCCATCATCTTCATCGTCTCCATCGTGGCCCTCGGCTGGTCACTCCTCACAGTCCTC AGCATGTTTGCCGTCGAGATTGACGGCAAACTGGTGGCCGTCATCGACTTCGGCATCATGGGAGCCCTGATCGGC GGCGTCGTCAGACTGCGCTTCATCCAATTTTCCTGTCTCGTCCGTCGCTTCTTTCGCACAGCCCTGACTGACGAA GCATTCCGATTATGTGCCTCGGTTAAGGCTAGCTGGATTCTAGCCATCATTGCCCTCATCATGTTCTTCGTCACG GGTGTGCTGGCCCTCTTGGCCTCATTTCTCAGACAACCCTTCCGCTTTGGTGGCAAGAGACGGAGAAGAGCGGTG CATGCGGAACATGCCGGAGTGCACGTCCACGTCGATTCGTGA |
| Gene | >Ophio5|5710 ATGGGCGTCTTTACTCCTCCGCCTATTCTCGCGCTGGCGTACTTAGGAGTACGCTTGTTCCAAATATTCTTGCTC TTGGTGAGTCGTTCGCCTCACCCTCTACAGCTGTCACGATGCTGATGCCTGCATTTCTAGACGCCCATCGTCGGT CTCCTTGGCTGGTTCACCGACGTCACCTTGTCTCGATTTGGCTTCGTCGACATTAGGCTATTGCCAGAGGGAGTG GCCATCATCTTCATCGTCTCCATCGTGGCCCTCGGCTGGTCACTCCTCACAGTCCTCAGCATGTTTGCCGTCGAG ATTGACGGCAAACTGGTGGCCGTCATCGACTTCGGCATCATGGGAGCCCTGATCGGCGGCGTCGTCAGACTGCGC TTCATCCAATTTTCCTGTCTCGTCCGTCGCTTCTTTCGCACAGCCCTGACTGACGAAGCATTCCGATTATGTGCC TCGGTTAAGGCTAGCTGGATTCTAGCCATCATTGCCCTCATCATGTTCTTCGTCACGGGTGTGCTGGCCCTCTTG GCCTCATTTCTCAGACAACCCTTCCGCTTTGGTGGCAAGAGACGGAGAAGAGCGGTGCATGCGGAACATGCCGGA GTGCACGTCCACGTCGATTCGTGA |