Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5710
Gene name
Locationscaffold_476:9532..10156
Strand-
Gene length (bp)624
Transcript length (bp)567
Coding sequence length (bp)564
Protein length (aa) 188

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 49 71 22
3 86 108 22
4 137 159 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.49 0.0 1.54
CcL In ants, during behavior modification 0.21 0.0 0.78
CcD In ants, recently dead 0.00 0.0 0.00

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5710
MGVFTPPPILALAYLGVRLFQIFLLLTPIVGLLGWFTDVTLSRFGFVDIRLLPEGVAIIFIVSIVALGWSLLTVL
SMFAVEIDGKLVAVIDFGIMGALIGGVVRLRFIQFSCLVRRFFRTALTDEAFRLCASVKASWILAIIALIMFFVT
GVLALLASFLRQPFRFGGKRRRRAVHAEHAGVHVHVDS
Coding >Ophio5|5710
ATGGGCGTCTTTACTCCTCCGCCTATTCTCGCGCTGGCGTACTTAGGAGTACGCTTGTTCCAAATATTCTTGCTC
TTGACGCCCATCGTCGGTCTCCTTGGCTGGTTCACCGACGTCACCTTGTCTCGATTTGGCTTCGTCGACATTAGG
CTATTGCCAGAGGGAGTGGCCATCATCTTCATCGTCTCCATCGTGGCCCTCGGCTGGTCACTCCTCACAGTCCTC
AGCATGTTTGCCGTCGAGATTGACGGCAAACTGGTGGCCGTCATCGACTTCGGCATCATGGGAGCCCTGATCGGC
GGCGTCGTCAGACTGCGCTTCATCCAATTTTCCTGTCTCGTCCGTCGCTTCTTTCGCACAGCCCTGACTGACGAA
GCATTCCGATTATGTGCCTCGGTTAAGGCTAGCTGGATTCTAGCCATCATTGCCCTCATCATGTTCTTCGTCACG
GGTGTGCTGGCCCTCTTGGCCTCATTTCTCAGACAACCCTTCCGCTTTGGTGGCAAGAGACGGAGAAGAGCGGTG
CATGCGGAACATGCCGGAGTGCACGTCCACGTCGATTCG
Transcript >Ophio5|5710
ATGGGCGTCTTTACTCCTCCGCCTATTCTCGCGCTGGCGTACTTAGGAGTACGCTTGTTCCAAATATTCTTGCTC
TTGACGCCCATCGTCGGTCTCCTTGGCTGGTTCACCGACGTCACCTTGTCTCGATTTGGCTTCGTCGACATTAGG
CTATTGCCAGAGGGAGTGGCCATCATCTTCATCGTCTCCATCGTGGCCCTCGGCTGGTCACTCCTCACAGTCCTC
AGCATGTTTGCCGTCGAGATTGACGGCAAACTGGTGGCCGTCATCGACTTCGGCATCATGGGAGCCCTGATCGGC
GGCGTCGTCAGACTGCGCTTCATCCAATTTTCCTGTCTCGTCCGTCGCTTCTTTCGCACAGCCCTGACTGACGAA
GCATTCCGATTATGTGCCTCGGTTAAGGCTAGCTGGATTCTAGCCATCATTGCCCTCATCATGTTCTTCGTCACG
GGTGTGCTGGCCCTCTTGGCCTCATTTCTCAGACAACCCTTCCGCTTTGGTGGCAAGAGACGGAGAAGAGCGGTG
CATGCGGAACATGCCGGAGTGCACGTCCACGTCGATTCGTGA
Gene >Ophio5|5710
ATGGGCGTCTTTACTCCTCCGCCTATTCTCGCGCTGGCGTACTTAGGAGTACGCTTGTTCCAAATATTCTTGCTC
TTGGTGAGTCGTTCGCCTCACCCTCTACAGCTGTCACGATGCTGATGCCTGCATTTCTAGACGCCCATCGTCGGT
CTCCTTGGCTGGTTCACCGACGTCACCTTGTCTCGATTTGGCTTCGTCGACATTAGGCTATTGCCAGAGGGAGTG
GCCATCATCTTCATCGTCTCCATCGTGGCCCTCGGCTGGTCACTCCTCACAGTCCTCAGCATGTTTGCCGTCGAG
ATTGACGGCAAACTGGTGGCCGTCATCGACTTCGGCATCATGGGAGCCCTGATCGGCGGCGTCGTCAGACTGCGC
TTCATCCAATTTTCCTGTCTCGTCCGTCGCTTCTTTCGCACAGCCCTGACTGACGAAGCATTCCGATTATGTGCC
TCGGTTAAGGCTAGCTGGATTCTAGCCATCATTGCCCTCATCATGTTCTTCGTCACGGGTGTGCTGGCCCTCTTG
GCCTCATTTCTCAGACAACCCTTCCGCTTTGGTGGCAAGAGACGGAGAAGAGCGGTGCATGCGGAACATGCCGGA
GTGCACGTCCACGTCGATTCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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