© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5708 |
| Gene name | |
| Location | scaffold_475:14793..15882 |
| Strand | + |
| Gene length (bp) | 1089 |
| Transcript length (bp) | 975 |
| Coding sequence length (bp) | 972 |
| Protein length (aa) | 324 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular|Cell membrane | Signal peptide | 0.1306 | 0.1518 | 0.7063 | 0.5477 | 0.1252 | 0.0081 | 0.0757 | 0.353 | 0.1256 | 0.026 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 201 | 223 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 29.16 | 13.21 | 45.10 |
| CcL | In ants, during behavior modification | 32.37 | 15.14 | 49.59 |
| CcD | In ants, recently dead | 29.01 | 13.17 | 44.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.741475 | no |
| SC16a | CcD | 0.988174 | no |
| CcL | CcD | 0.724061 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 7328 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-floridani | Ophcf2|02888 |
| Ophiocordyceps camponoti-rufipedis | Ophun1|1810 |
| Ophiocordyceps kimflemingae | Ophio5|5708 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5708 MERVKADDARGRFPRKSRGLRARNVPAHNVPKTLARIIVGLPGGNGPGSAAPARGPQQRAAAPPSEIDSDSDSDN ETPPARVKPNPAVRAGTSTSLSTLTLVVSSAPKLTTAPNLVAPQRPVATSSRVPALNAISRTSQSVRQQQTTLSS SAERSSSFSTSSTQATETKSSATSVDAGIKAASPTPEEPDPKREGRLDGGAEAGIVVGVLAFIILLSFTIFLFRR YRRRRSGNQPPMATMLSDRMISAPMPARRQSDAMTVNVGYYDAANRRPSEPQGMVQEPQPASMARSGENEYFQRR VLAEPSPEMAEGAAERSHEPTHFI |
| Coding | >Ophio5|5708 ATGGAACGTGTGAAAGCTGACGACGCTCGCGGCCGGTTTCCGCGGAAATCCAGAGGGCTCCGAGCACGCAACGTG CCAGCCCACAACGTGCCCAAAACACTGGCACGCATCATCGTCGGGTTGCCTGGCGGTAATGGGCCTGGCTCGGCT GCCCCAGCCCGTGGGCCTCAGCAGCGAGCGGCGGCGCCGCCCAGCGAGATTGACTCGGACTCGGACTCGGACAAC GAAACGCCGCCTGCGAGGGTAAAGCCGAACCCGGCCGTTCGTGCCGGGACGTCGACCTCTCTGTCTACGCTGACG CTGGTGGTCTCATCTGCACCAAAGCTGACGACTGCTCCGAACTTGGTGGCACCTCAAAGACCGGTGGCGACATCG AGTCGAGTGCCTGCTTTGAACGCCATCAGCCGAACTTCGCAGAGCGTCCGCCAGCAGCAGACGACATTGTCGTCG TCGGCCGAGCGATCCTCTTCTTTCAGCACCTCGAGCACGCAGGCGACAGAGACAAAGTCATCTGCAACATCGGTC GATGCGGGCATCAAGGCGGCCAGCCCCACCCCGGAAGAGCCCGACCCCAAGCGAGAGGGGCGTTTAGATGGCGGG GCCGAGGCTGGCATCGTCGTGGGTGTCTTGGCCTTTATCATTCTCCTGTCCTTCACCATCTTTTTATTCCGCCGC TACCGCCGTAGACGATCCGGGAACCAGCCTCCCATGGCAACGATGCTATCGGACAGGATGATATCGGCACCGATG CCGGCACGGAGGCAGTCGGACGCCATGACGGTCAACGTCGGCTACTATGACGCAGCGAATCGACGGCCATCGGAG CCGCAAGGCATGGTCCAGGAGCCGCAGCCGGCGTCTATGGCACGGTCCGGCGAGAACGAGTATTTCCAGCGCCGG GTGCTTGCCGAGCCGTCACCGGAGATGGCCGAGGGAGCGGCGGAGCGGTCACATGAGCCGACGCATTTCATT |
| Transcript | >Ophio5|5708 ATGGAACGTGTGAAAGCTGACGACGCTCGCGGCCGGTTTCCGCGGAAATCCAGAGGGCTCCGAGCACGCAACGTG CCAGCCCACAACGTGCCCAAAACACTGGCACGCATCATCGTCGGGTTGCCTGGCGGTAATGGGCCTGGCTCGGCT GCCCCAGCCCGTGGGCCTCAGCAGCGAGCGGCGGCGCCGCCCAGCGAGATTGACTCGGACTCGGACTCGGACAAC GAAACGCCGCCTGCGAGGGTAAAGCCGAACCCGGCCGTTCGTGCCGGGACGTCGACCTCTCTGTCTACGCTGACG CTGGTGGTCTCATCTGCACCAAAGCTGACGACTGCTCCGAACTTGGTGGCACCTCAAAGACCGGTGGCGACATCG AGTCGAGTGCCTGCTTTGAACGCCATCAGCCGAACTTCGCAGAGCGTCCGCCAGCAGCAGACGACATTGTCGTCG TCGGCCGAGCGATCCTCTTCTTTCAGCACCTCGAGCACGCAGGCGACAGAGACAAAGTCATCTGCAACATCGGTC GATGCGGGCATCAAGGCGGCCAGCCCCACCCCGGAAGAGCCCGACCCCAAGCGAGAGGGGCGTTTAGATGGCGGG GCCGAGGCTGGCATCGTCGTGGGTGTCTTGGCCTTTATCATTCTCCTGTCCTTCACCATCTTTTTATTCCGCCGC TACCGCCGTAGACGATCCGGGAACCAGCCTCCCATGGCAACGATGCTATCGGACAGGATGATATCGGCACCGATG CCGGCACGGAGGCAGTCGGACGCCATGACGGTCAACGTCGGCTACTATGACGCAGCGAATCGACGGCCATCGGAG CCGCAAGGCATGGTCCAGGAGCCGCAGCCGGCGTCTATGGCACGGTCCGGCGAGAACGAGTATTTCCAGCGCCGG GTGCTTGCCGAGCCGTCACCGGAGATGGCCGAGGGAGCGGCGGAGCGGTCACATGAGCCGACGCATTTCATTTAA |
| Gene | >Ophio5|5708 ATGGAACGTGTGAAAGCTGACGACGCTCGGTAAGGCTGAGAGAAACATCTTCCTTGTTCAACATATTTATTGACT GACTTTTTCACAGCGGCCGGTTTCCGCGGAAATCCAGAGGGCTCCGAGCACGCAACGTGCCAGCCCACAACGTGC CCAAAACACTGGCACGCATCATCGTCGGGTTGCCTGGCGGTAATGGGCCTGGCTCGGCTGCCCCAGCCCGTGGGC CTCAGCAGCGAGCGGCGGCGCCGCCCAGCGAGATTGACTCGGACTCGGACTCGGACAACGAAACGCCGCCTGCGA GGGTAAAGCCGAACCCGGCCGTTCGTGCCGGGACGTCGACCTCTCTGTCTACGCTGACGCTGGTGGTCTCATCTG CACCAAAGCTGACGACTGCTCCGAACTTGGTGGCACCTCAAAGACCGGTGGCGACATCGAGTCGAGTGCCTGCTT TGAACGCCATCAGCCGAACTTCGCAGAGCGTCCGCCAGCAGCAGACGACATTGTCGTCGTCGGCCGAGCGATCCT CTTCTTTCAGCACCTCGAGCACGCAGGCGACAGAGACAAAGTCATCTGCAACATCGGTCGATGCGGGCATCAAGG CGGCCAGCCCCACCCCGGAAGAGCCCGACCCCAAGCGAGAGGGGCGTTTAGATGGCGGGGCCGAGGCTGGCATCG TCGTGGGTGTCTTGGGTAAGTTTTTGATTGGTTGGCATTGCATGTTACATGAAGCTCATGCGTGCGGCAGCCTTT ATCATTCTCCTGTCCTTCACCATCTTTTTATTCCGCCGCTACCGCCGTAGACGATCCGGGAACCAGCCTCCCATG GCAACGATGCTATCGGACAGGATGATATCGGCACCGATGCCGGCACGGAGGCAGTCGGACGCCATGACGGTCAAC GTCGGCTACTATGACGCAGCGAATCGACGGCCATCGGAGCCGCAAGGCATGGTCCAGGAGCCGCAGCCGGCGTCT ATGGCACGGTCCGGCGAGAACGAGTATTTCCAGCGCCGGGTGCTTGCCGAGCCGTCACCGGAGATGGCCGAGGGA GCGGCGGAGCGGTCACATGAGCCGACGCATTTCATTTAA |