Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5705
Gene name
Locationscaffold_475:6158..6488
Strand-
Gene length (bp)330
Transcript length (bp)330
Coding sequence length (bp)327
Protein length (aa) 109

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q00371|CAP22_COLGL Protein CAP22 OS=Colletotrichum gloeosporioides GN=CAP22 PE=2 SV=1 9 104 8.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5705
MKHRRRKLVLAAATLLLGAQARIELDMDQVPDECSAMCKPIGTLTQSCDTKLPDGTDADEKLLEAQCVCTNKSFD
VQAVTGLCAGCLRQEVTKATKTDEKKKLQISNQG
Coding >Ophio5|5705
ATGAAGCACCGCAGAAGAAAGCTGGTCCTCGCCGCGGCCACGCTCCTCCTCGGCGCGCAGGCCCGCATTGAGCTC
GACATGGACCAGGTGCCGGACGAGTGCAGCGCCATGTGCAAGCCCATCGGGACGCTAACCCAATCATGCGACACG
AAGCTCCCGGACGGGACCGACGCAGATGAGAAGCTACTCGAGGCGCAGTGCGTGTGTACGAACAAGAGCTTCGAC
GTCCAGGCCGTCACGGGCCTTTGCGCCGGCTGTTTGCGTCAGGAGGTGACGAAAGCGACCAAGACGGATGAGAAG
AAGAAGCTACAGATATCGAATCAAGGT
Transcript >Ophio5|5705
ATGAAGCACCGCAGAAGAAAGCTGGTCCTCGCCGCGGCCACGCTCCTCCTCGGCGCGCAGGCCCGCATTGAGCTC
GACATGGACCAGGTGCCGGACGAGTGCAGCGCCATGTGCAAGCCCATCGGGACGCTAACCCAATCATGCGACACG
AAGCTCCCGGACGGGACCGACGCAGATGAGAAGCTACTCGAGGCGCAGTGCGTGTGTACGAACAAGAGCTTCGAC
GTCCAGGCCGTCACGGGCCTTTGCGCCGGCTGTTTGCGTCAGGAGGTGACGAAAGCGACCAAGACGGATGAGAAG
AAGAAGCTACAGATATCGAATCAAGGTTAG
Gene >Ophio5|5705
ATGAAGCACCGCAGAAGAAAGCTGGTCCTCGCCGCGGCCACGCTCCTCCTCGGCGCGCAGGCCCGCATTGAGCTC
GACATGGACCAGGTGCCGGACGAGTGCAGCGCCATGTGCAAGCCCATCGGGACGCTAACCCAATCATGCGACACG
AAGCTCCCGGACGGGACCGACGCAGATGAGAAGCTACTCGAGGCGCAGTGCGTGTGTACGAACAAGAGCTTCGAC
GTCCAGGCCGTCACGGGCCTTTGCGCCGGCTGTTTGCGTCAGGAGGTGACGAAAGCGACCAAGACGGATGAGAAG
AAGAAGCTACAGATATCGAATCAAGGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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