© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5692 |
| Gene name | |
| Location | scaffold_473:3265..4633 |
| Strand | - |
| Gene length (bp) | 1368 |
| Transcript length (bp) | 1368 |
| Coding sequence length (bp) | 1365 |
| Protein length (aa) | 455 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03595 | SLAC1 | Voltage-dependent anion channel | 1.9E-85 | 98 | 433 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P50537|MAE1_SCHPO | Malic acid transport protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mae1 PE=1 SV=1 | 88 | 451 | 6.0E-73 |
| sp|O59815|MAE2_SCHPO | Putative malic acid transport protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.06 PE=3 SV=1 | 88 | 452 | 5.0E-70 |
| sp|A3QUP1|SSU1_TRIRU | Sulfite efflux pump SSU1 OS=Trichophyton rubrum GN=SSU1 PE=2 SV=1 | 103 | 443 | 3.0E-20 |
| sp|A3R044|SSU1_ARTBC | Sulfite efflux pump SSU1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=SSU1 PE=2 SV=1 | 103 | 443 | 5.0E-20 |
| sp|C5G0E3|SSU1_ARTOC | Sulfite efflux pump SSU1 OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=SSU1 PE=3 SV=2 | 103 | 443 | 8.0E-19 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P50537|MAE1_SCHPO | Malic acid transport protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mae1 PE=1 SV=1 | 88 | 451 | 6.0E-73 |
| sp|O59815|MAE2_SCHPO | Putative malic acid transport protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.06 PE=3 SV=1 | 88 | 452 | 5.0E-70 |
| sp|A3QUP1|SSU1_TRIRU | Sulfite efflux pump SSU1 OS=Trichophyton rubrum GN=SSU1 PE=2 SV=1 | 103 | 443 | 3.0E-20 |
| sp|A3R044|SSU1_ARTBC | Sulfite efflux pump SSU1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=SSU1 PE=2 SV=1 | 103 | 443 | 5.0E-20 |
| sp|C5G0E3|SSU1_ARTOC | Sulfite efflux pump SSU1 OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=SSU1 PE=3 SV=2 | 103 | 443 | 8.0E-19 |
| sp|Q58172|Y762_METJA | Uncharacterized transporter MJ0762 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0762 PE=3 SV=1 | 92 | 448 | 2.0E-14 |
| sp|Q57996|Y576_METJA | Uncharacterized transporter MJ0576 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0576 PE=3 SV=1 | 73 | 419 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| GO:0008150 | biological_process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.2091 | 0.0993 | 0.0517 | 0.5554 | 0.0959 | 0.0031 | 0.153 | 0.5212 | 0.4714 | 0.0081 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 99 | 121 | 22 |
| 2 | 133 | 155 | 22 |
| 3 | 170 | 192 | 22 |
| 4 | 199 | 221 | 22 |
| 5 | 236 | 258 | 22 |
| 6 | 270 | 292 | 22 |
| 7 | 347 | 369 | 22 |
| 8 | 381 | 403 | 22 |
| 9 | 413 | 435 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 0.63 | 0.00 | 1.36 |
| CcL | In ants, during behavior modification | 145.16 | 14.32 | 275.99 |
| CcD | In ants, recently dead | 6.99 | 2.25 | 11.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000535 | yes |
| CcL | CcD | 0.000286 | yes |
| Orthofinder run ID | 4 |
| Orthogroup | 2919 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5692 MGTQVVTGHGVAMPEMRSWNNSGSSTRRNSFTAASDAFTSVSGSSFKGKTHQLSPGFYYYPGEKAGSVSRGGLEA QPTQVDINDPNRPRLPLRQRLHHFTWAWYTLAMSTGGLAVLIFAQPHQFKGLRTIGLVLYVINLFIFTTITILLV SRFFLHPGDLTRSLQHPREGFFFPTFFLAIATIITGTDRYVIPKNDVNLTWAIQGAFWTYLAFTLILAVGQYSYV FASHSFGLQTMMPTWILPIFPIMLSGTIASVIADTQPDIAATPIIVAGLTCQGLGLSVAFMMYAHMVGRLMQSGL PNREHRPGLFMCVGPPSFTALALIGMANGLPARASSTAEGTFLDTGVIRTVALLCAIFLWALSLWWFGIAAVSVI LSPPEYFHLGWWAMVFPNTGFTLATISIGKALGSEPVSWVGTGMTIFIIITYLVVLFFNIRAVIVQDIMYPDRDE DVVDH |
| Coding | >Ophio5|5692 ATGGGTACCCAAGTCGTCACCGGACACGGCGTGGCCATGCCCGAGATGCGAAGCTGGAACAACTCGGGCTCCTCG ACGCGACGAAACTCCTTCACCGCAGCCAGCGACGCCTTCACCTCGGTCAGTGGCAGCTCCTTCAAGGGTAAAACC CATCAGCTCTCACCCGGATTCTACTACTATCCCGGCGAGAAGGCCGGATCCGTCTCCCGCGGCGGACTCGAGGCT CAGCCGACACAAGTGGACATCAATGATCCGAACCGGCCCCGGCTGCCGTTGCGTCAGCGTCTTCACCACTTCACC TGGGCGTGGTATACGCTGGCCATGAGTACCGGCGGTCTGGCCGTTCTCATCTTCGCCCAACCGCATCAGTTCAAG GGCCTCCGGACCATCGGCCTCGTACTCTACGTCATCAACCTCTTCATCTTTACTACCATCACCATCCTTCTTGTC TCCCGCTTCTTCCTTCATCCCGGTGATCTGACGCGGTCGCTACAGCATCCGCGAGAAGGCTTCTTCTTTCCCACC TTCTTCCTCGCCATCGCCACCATCATCACCGGCACGGATCGCTATGTCATCCCCAAGAACGATGTTAACCTCACG TGGGCCATCCAGGGCGCCTTCTGGACGTACCTCGCCTTCACCCTGATCCTGGCTGTCGGTCAGTACAGTTACGTC TTCGCCTCCCACAGCTTCGGCCTGCAGACGATGATGCCGACCTGGATTCTGCCCATCTTCCCCATCATGCTGTCC GGCACCATCGCCTCCGTCATCGCCGATACCCAGCCGGACATTGCGGCCACGCCCATCATCGTCGCCGGCCTCACC TGTCAGGGCTTGGGACTGTCGGTCGCCTTCATGATGTACGCCCACATGGTCGGTCGCCTGATGCAATCCGGCCTT CCCAACCGTGAGCATCGCCCGGGCCTCTTCATGTGCGTCGGTCCGCCCTCCTTCACCGCACTCGCCCTCATCGGT ATGGCCAACGGACTGCCGGCCCGGGCGAGCTCCACTGCTGAGGGCACCTTTCTCGACACCGGCGTCATCCGAACC GTCGCCCTCCTCTGCGCCATCTTTCTTTGGGCCCTCAGCTTGTGGTGGTTTGGCATCGCCGCCGTCTCCGTCATC CTGTCGCCTCCCGAGTATTTCCATCTCGGCTGGTGGGCCATGGTCTTTCCCAACACCGGTTTCACTCTGGCTACC ATTTCCATCGGCAAGGCATTGGGGAGCGAGCCCGTGTCGTGGGTTGGCACTGGCATGACCATCTTCATCATCATC ACCTATTTGGTCGTCCTCTTCTTCAACATCCGCGCCGTCATTGTGCAGGACATTATGTACCCGGACAGAGACGAG GACGTGGTAGACCAC |
| Transcript | >Ophio5|5692 ATGGGTACCCAAGTCGTCACCGGACACGGCGTGGCCATGCCCGAGATGCGAAGCTGGAACAACTCGGGCTCCTCG ACGCGACGAAACTCCTTCACCGCAGCCAGCGACGCCTTCACCTCGGTCAGTGGCAGCTCCTTCAAGGGTAAAACC CATCAGCTCTCACCCGGATTCTACTACTATCCCGGCGAGAAGGCCGGATCCGTCTCCCGCGGCGGACTCGAGGCT CAGCCGACACAAGTGGACATCAATGATCCGAACCGGCCCCGGCTGCCGTTGCGTCAGCGTCTTCACCACTTCACC TGGGCGTGGTATACGCTGGCCATGAGTACCGGCGGTCTGGCCGTTCTCATCTTCGCCCAACCGCATCAGTTCAAG GGCCTCCGGACCATCGGCCTCGTACTCTACGTCATCAACCTCTTCATCTTTACTACCATCACCATCCTTCTTGTC TCCCGCTTCTTCCTTCATCCCGGTGATCTGACGCGGTCGCTACAGCATCCGCGAGAAGGCTTCTTCTTTCCCACC TTCTTCCTCGCCATCGCCACCATCATCACCGGCACGGATCGCTATGTCATCCCCAAGAACGATGTTAACCTCACG TGGGCCATCCAGGGCGCCTTCTGGACGTACCTCGCCTTCACCCTGATCCTGGCTGTCGGTCAGTACAGTTACGTC TTCGCCTCCCACAGCTTCGGCCTGCAGACGATGATGCCGACCTGGATTCTGCCCATCTTCCCCATCATGCTGTCC GGCACCATCGCCTCCGTCATCGCCGATACCCAGCCGGACATTGCGGCCACGCCCATCATCGTCGCCGGCCTCACC TGTCAGGGCTTGGGACTGTCGGTCGCCTTCATGATGTACGCCCACATGGTCGGTCGCCTGATGCAATCCGGCCTT CCCAACCGTGAGCATCGCCCGGGCCTCTTCATGTGCGTCGGTCCGCCCTCCTTCACCGCACTCGCCCTCATCGGT ATGGCCAACGGACTGCCGGCCCGGGCGAGCTCCACTGCTGAGGGCACCTTTCTCGACACCGGCGTCATCCGAACC GTCGCCCTCCTCTGCGCCATCTTTCTTTGGGCCCTCAGCTTGTGGTGGTTTGGCATCGCCGCCGTCTCCGTCATC CTGTCGCCTCCCGAGTATTTCCATCTCGGCTGGTGGGCCATGGTCTTTCCCAACACCGGTTTCACTCTGGCTACC ATTTCCATCGGCAAGGCATTGGGGAGCGAGCCCGTGTCGTGGGTTGGCACTGGCATGACCATCTTCATCATCATC ACCTATTTGGTCGTCCTCTTCTTCAACATCCGCGCCGTCATTGTGCAGGACATTATGTACCCGGACAGAGACGAG GACGTGGTAGACCACTAA |
| Gene | >Ophio5|5692 ATGGGTACCCAAGTCGTCACCGGACACGGCGTGGCCATGCCCGAGATGCGAAGCTGGAACAACTCGGGCTCCTCG ACGCGACGAAACTCCTTCACCGCAGCCAGCGACGCCTTCACCTCGGTCAGTGGCAGCTCCTTCAAGGGTAAAACC CATCAGCTCTCACCCGGATTCTACTACTATCCCGGCGAGAAGGCCGGATCCGTCTCCCGCGGCGGACTCGAGGCT CAGCCGACACAAGTGGACATCAATGATCCGAACCGGCCCCGGCTGCCGTTGCGTCAGCGTCTTCACCACTTCACC TGGGCGTGGTATACGCTGGCCATGAGTACCGGCGGTCTGGCCGTTCTCATCTTCGCCCAACCGCATCAGTTCAAG GGCCTCCGGACCATCGGCCTCGTACTCTACGTCATCAACCTCTTCATCTTTACTACCATCACCATCCTTCTTGTC TCCCGCTTCTTCCTTCATCCCGGTGATCTGACGCGGTCGCTACAGCATCCGCGAGAAGGCTTCTTCTTTCCCACC TTCTTCCTCGCCATCGCCACCATCATCACCGGCACGGATCGCTATGTCATCCCCAAGAACGATGTTAACCTCACG TGGGCCATCCAGGGCGCCTTCTGGACGTACCTCGCCTTCACCCTGATCCTGGCTGTCGGTCAGTACAGTTACGTC TTCGCCTCCCACAGCTTCGGCCTGCAGACGATGATGCCGACCTGGATTCTGCCCATCTTCCCCATCATGCTGTCC GGCACCATCGCCTCCGTCATCGCCGATACCCAGCCGGACATTGCGGCCACGCCCATCATCGTCGCCGGCCTCACC TGTCAGGGCTTGGGACTGTCGGTCGCCTTCATGATGTACGCCCACATGGTCGGTCGCCTGATGCAATCCGGCCTT CCCAACCGTGAGCATCGCCCGGGCCTCTTCATGTGCGTCGGTCCGCCCTCCTTCACCGCACTCGCCCTCATCGGT ATGGCCAACGGACTGCCGGCCCGGGCGAGCTCCACTGCTGAGGGCACCTTTCTCGACACCGGCGTCATCCGAACC GTCGCCCTCCTCTGCGCCATCTTTCTTTGGGCCCTCAGCTTGTGGTGGTTTGGCATCGCCGCCGTCTCCGTCATC CTGTCGCCTCCCGAGTATTTCCATCTCGGCTGGTGGGCCATGGTCTTTCCCAACACCGGTTTCACTCTGGCTACC ATTTCCATCGGCAAGGCATTGGGGAGCGAGCCCGTGTCGTGGGTTGGCACTGGCATGACCATCTTCATCATCATC ACCTATTTGGTCGTCCTCTTCTTCAACATCCGCGCCGTCATTGTGCAGGACATTATGTACCCGGACAGAGACGAG GACGTGGTAGACCACTAA |