© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5668 |
| Gene name | |
| Location | scaffold_47:34784..37055 |
| Strand | - |
| Gene length (bp) | 2271 |
| Transcript length (bp) | 2271 |
| Coding sequence length (bp) | 2268 |
| Protein length (aa) | 756 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF18564 | Glyco_hydro_5_C | Glycoside hydrolase family 5 C-terminal domain | 1.1E-23 | 631 | 719 |
| PF00150 | Cellulase | Cellulase (glycosyl hydrolase family 5) | 5.9E-07 | 67 | 134 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40566|YIS7_YEAST | Uncharacterized glycosyl hydrolase YIR007W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIR007W PE=1 SV=1 | 11 | 720 | 1.0E-169 |
| sp|Q9GV16|EGCSE_CYANO | Endoglycoceramidase OS=Cyanea nozakii PE=1 SV=1 | 2 | 253 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0071704 | organic substance metabolic process | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 53.67 | 29.17 | 78.17 |
| CcL | In ants, during behavior modification | 43.03 | 23.36 | 62.69 |
| CcD | In ants, recently dead | 52.17 | 28.04 | 76.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.361030 | no |
| SC16a | CcD | 0.920725 | no |
| CcL | CcD | 0.429740 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5668 MASFRLSIEGGRFRDSHGRQVVLRGINVAGDSKLPSEPNQPSHEARGFFEGDDVTFHQRPFSKEDAPTHFARIRR YGFNTIRYVFTWEALEAAGPGKYDEVFIQHTIDVLRVAKTYGLYVFMDPHQDVWSRFTGGSGAPLWTIYACGLNP LAFAATGAALVHNAWPDPAKFPKMIWGTNYNRLAAATIFTLFFAGKDFAPKCVIDGVNIQDYLQTHFFRACAHLS RRIHEAGDLEDQVVIGWESLNEPNKGMIGHADLSTIPKELYLKKGTCPTLWQTMLNGMGRACEVDTWDMGGMGPY KTGTALIDPHGQVAWLSPDYDDSRYGWTRHPDWRLGECIWAQHGVWDPDTDTLLRKDYFAKNPHTGVTIDYPEFT NTYFMDFFRSYRQACRAHHSGCIMLLQYPTLELPPLIKGTADDDHRMAFTPHYYDGITLMTKHWNSIWNVDVVGV LRGKYLHPAFAIKIGESAIRNCLKEQLATLRQEGIDRTGNHPCILSEFGIPFDMDDKKAYKTGDYTSQTAALDAN YYGVEGSQMEGHCLWLYCVTNDHEQGDQWNGEDLSICSVDDKLPPQSPAVTKGFSATNGESGDDETVTPGNLRRA LTNPSISSGPSIKDPELTNTPGFRAAEAFIRPTPTAVAGDVVSSGFDMRRCVFELRLRASKAPADEAPTTVFLPE FHFPSERCEVTVSSGKWEISSTEDEGTRLQRLRWWHDEGEQHLTVRGLVRKLNAPQGSAEEMGYLEQCQQMYLNM GSCCVM |
| Coding | >Ophio5|5668 ATGGCTTCCTTCCGCCTGTCGATCGAAGGTGGCCGCTTCCGCGATAGCCACGGCCGCCAGGTGGTGCTCCGAGGC ATCAACGTTGCTGGCGACTCGAAGCTCCCCAGCGAGCCCAACCAGCCGTCGCATGAGGCCCGAGGCTTCTTCGAG GGCGATGATGTCACCTTTCATCAGCGGCCATTCTCAAAGGAGGACGCGCCGACGCACTTTGCTCGCATCAGGCGT TATGGCTTCAACACTATCCGTTACGTCTTCACATGGGAAGCTCTCGAGGCCGCTGGCCCTGGCAAATACGACGAG GTTTTCATCCAACACACCATCGACGTCCTTCGCGTCGCCAAGACCTATGGTCTCTACGTCTTCATGGATCCGCAT CAGGACGTCTGGTCCCGCTTCACTGGCGGCTCTGGCGCTCCCCTTTGGACCATCTACGCCTGTGGCCTCAACCCG CTGGCCTTCGCTGCTACTGGGGCCGCCCTTGTCCATAATGCGTGGCCTGATCCCGCCAAGTTTCCCAAGATGATT TGGGGCACAAACTACAATCGCCTCGCTGCCGCCACAATCTTCACTCTCTTCTTCGCCGGCAAGGATTTCGCCCCC AAGTGTGTCATCGACGGTGTCAACATCCAGGATTACCTGCAGACGCATTTTTTCAGAGCCTGCGCCCACCTTTCT AGGCGCATTCACGAGGCCGGCGATCTTGAAGACCAGGTTGTCATCGGCTGGGAGAGCCTCAATGAACCCAACAAG GGCATGATCGGCCATGCTGACCTGAGCACGATTCCCAAGGAGTTATACTTGAAAAAGGGCACCTGCCCGACCCTT TGGCAGACCATGTTGAACGGCATGGGCAGAGCCTGCGAGGTCGACACCTGGGACATGGGTGGCATGGGCCCCTAC AAGACGGGCACCGCCCTCATCGACCCTCACGGTCAGGTTGCCTGGCTATCTCCAGATTACGACGACTCCCGCTAC GGCTGGACTCGACATCCCGATTGGCGCCTCGGGGAGTGTATCTGGGCTCAGCATGGCGTGTGGGATCCTGACACC GACACCCTTCTGAGAAAGGACTATTTTGCCAAGAATCCCCATACCGGCGTCACCATCGACTATCCCGAGTTCACG AACACGTACTTTATGGACTTTTTCAGGTCTTACCGTCAGGCTTGTCGCGCTCATCACTCTGGTTGCATCATGCTG CTGCAATATCCGACACTGGAACTCCCGCCGCTCATCAAGGGCACGGCCGACGACGATCATCGCATGGCCTTTACG CCGCATTACTATGACGGCATCACCCTCATGACCAAACACTGGAATAGCATATGGAACGTCGATGTCGTAGGCGTT CTTCGTGGCAAATATCTCCACCCAGCTTTTGCCATCAAGATCGGCGAGTCGGCAATCCGCAACTGCCTCAAGGAG CAGCTGGCGACGCTGCGACAAGAGGGCATTGACCGGACGGGCAACCATCCTTGCATCCTCTCCGAGTTTGGTATC CCGTTTGACATGGACGACAAGAAGGCCTATAAGACGGGTGACTACACGAGCCAGACGGCCGCGCTTGACGCCAAC TACTACGGCGTCGAAGGCTCTCAGATGGAGGGCCACTGCCTGTGGCTTTATTGCGTCACCAATGACCACGAGCAA GGCGACCAATGGAACGGCGAAGACTTGTCGATTTGCTCCGTCGACGACAAGCTACCGCCGCAGTCTCCGGCCGTC ACGAAAGGCTTTTCTGCCACCAACGGCGAAAGCGGTGACGACGAGACCGTCACGCCGGGAAATCTCCGTCGTGCC CTTACCAATCCATCCATCAGCTCCGGCCCCTCGATCAAGGACCCCGAGCTTACCAACACGCCGGGCTTTCGAGCG GCCGAGGCCTTCATCCGACCGACGCCAACTGCGGTGGCGGGAGACGTCGTCTCATCCGGCTTCGATATGCGCCGT TGCGTCTTCGAGCTCCGGCTTCGAGCGTCGAAGGCACCAGCCGACGAGGCCCCCACCACCGTCTTCCTGCCCGAG TTCCACTTCCCCTCAGAGCGGTGCGAGGTGACGGTCTCGTCCGGCAAATGGGAGATTAGCTCGACCGAGGACGAG GGGACGAGGCTGCAGAGGTTGCGATGGTGGCATGACGAGGGCGAGCAGCACTTGACGGTTCGGGGGTTGGTCCGG AAGCTCAACGCGCCGCAGGGCTCGGCGGAGGAGATGGGCTACTTGGAGCAGTGTCAGCAGATGTATCTGAACATG GGAAGCTGTTGCGTCATG |
| Transcript | >Ophio5|5668 ATGGCTTCCTTCCGCCTGTCGATCGAAGGTGGCCGCTTCCGCGATAGCCACGGCCGCCAGGTGGTGCTCCGAGGC ATCAACGTTGCTGGCGACTCGAAGCTCCCCAGCGAGCCCAACCAGCCGTCGCATGAGGCCCGAGGCTTCTTCGAG GGCGATGATGTCACCTTTCATCAGCGGCCATTCTCAAAGGAGGACGCGCCGACGCACTTTGCTCGCATCAGGCGT TATGGCTTCAACACTATCCGTTACGTCTTCACATGGGAAGCTCTCGAGGCCGCTGGCCCTGGCAAATACGACGAG GTTTTCATCCAACACACCATCGACGTCCTTCGCGTCGCCAAGACCTATGGTCTCTACGTCTTCATGGATCCGCAT CAGGACGTCTGGTCCCGCTTCACTGGCGGCTCTGGCGCTCCCCTTTGGACCATCTACGCCTGTGGCCTCAACCCG CTGGCCTTCGCTGCTACTGGGGCCGCCCTTGTCCATAATGCGTGGCCTGATCCCGCCAAGTTTCCCAAGATGATT TGGGGCACAAACTACAATCGCCTCGCTGCCGCCACAATCTTCACTCTCTTCTTCGCCGGCAAGGATTTCGCCCCC AAGTGTGTCATCGACGGTGTCAACATCCAGGATTACCTGCAGACGCATTTTTTCAGAGCCTGCGCCCACCTTTCT AGGCGCATTCACGAGGCCGGCGATCTTGAAGACCAGGTTGTCATCGGCTGGGAGAGCCTCAATGAACCCAACAAG GGCATGATCGGCCATGCTGACCTGAGCACGATTCCCAAGGAGTTATACTTGAAAAAGGGCACCTGCCCGACCCTT TGGCAGACCATGTTGAACGGCATGGGCAGAGCCTGCGAGGTCGACACCTGGGACATGGGTGGCATGGGCCCCTAC AAGACGGGCACCGCCCTCATCGACCCTCACGGTCAGGTTGCCTGGCTATCTCCAGATTACGACGACTCCCGCTAC GGCTGGACTCGACATCCCGATTGGCGCCTCGGGGAGTGTATCTGGGCTCAGCATGGCGTGTGGGATCCTGACACC GACACCCTTCTGAGAAAGGACTATTTTGCCAAGAATCCCCATACCGGCGTCACCATCGACTATCCCGAGTTCACG AACACGTACTTTATGGACTTTTTCAGGTCTTACCGTCAGGCTTGTCGCGCTCATCACTCTGGTTGCATCATGCTG CTGCAATATCCGACACTGGAACTCCCGCCGCTCATCAAGGGCACGGCCGACGACGATCATCGCATGGCCTTTACG CCGCATTACTATGACGGCATCACCCTCATGACCAAACACTGGAATAGCATATGGAACGTCGATGTCGTAGGCGTT CTTCGTGGCAAATATCTCCACCCAGCTTTTGCCATCAAGATCGGCGAGTCGGCAATCCGCAACTGCCTCAAGGAG CAGCTGGCGACGCTGCGACAAGAGGGCATTGACCGGACGGGCAACCATCCTTGCATCCTCTCCGAGTTTGGTATC CCGTTTGACATGGACGACAAGAAGGCCTATAAGACGGGTGACTACACGAGCCAGACGGCCGCGCTTGACGCCAAC TACTACGGCGTCGAAGGCTCTCAGATGGAGGGCCACTGCCTGTGGCTTTATTGCGTCACCAATGACCACGAGCAA GGCGACCAATGGAACGGCGAAGACTTGTCGATTTGCTCCGTCGACGACAAGCTACCGCCGCAGTCTCCGGCCGTC ACGAAAGGCTTTTCTGCCACCAACGGCGAAAGCGGTGACGACGAGACCGTCACGCCGGGAAATCTCCGTCGTGCC CTTACCAATCCATCCATCAGCTCCGGCCCCTCGATCAAGGACCCCGAGCTTACCAACACGCCGGGCTTTCGAGCG GCCGAGGCCTTCATCCGACCGACGCCAACTGCGGTGGCGGGAGACGTCGTCTCATCCGGCTTCGATATGCGCCGT TGCGTCTTCGAGCTCCGGCTTCGAGCGTCGAAGGCACCAGCCGACGAGGCCCCCACCACCGTCTTCCTGCCCGAG TTCCACTTCCCCTCAGAGCGGTGCGAGGTGACGGTCTCGTCCGGCAAATGGGAGATTAGCTCGACCGAGGACGAG GGGACGAGGCTGCAGAGGTTGCGATGGTGGCATGACGAGGGCGAGCAGCACTTGACGGTTCGGGGGTTGGTCCGG AAGCTCAACGCGCCGCAGGGCTCGGCGGAGGAGATGGGCTACTTGGAGCAGTGTCAGCAGATGTATCTGAACATG GGAAGCTGTTGCGTCATGTAA |
| Gene | >Ophio5|5668 ATGGCTTCCTTCCGCCTGTCGATCGAAGGTGGCCGCTTCCGCGATAGCCACGGCCGCCAGGTGGTGCTCCGAGGC ATCAACGTTGCTGGCGACTCGAAGCTCCCCAGCGAGCCCAACCAGCCGTCGCATGAGGCCCGAGGCTTCTTCGAG GGCGATGATGTCACCTTTCATCAGCGGCCATTCTCAAAGGAGGACGCGCCGACGCACTTTGCTCGCATCAGGCGT TATGGCTTCAACACTATCCGTTACGTCTTCACATGGGAAGCTCTCGAGGCCGCTGGCCCTGGCAAATACGACGAG GTTTTCATCCAACACACCATCGACGTCCTTCGCGTCGCCAAGACCTATGGTCTCTACGTCTTCATGGATCCGCAT CAGGACGTCTGGTCCCGCTTCACTGGCGGCTCTGGCGCTCCCCTTTGGACCATCTACGCCTGTGGCCTCAACCCG CTGGCCTTCGCTGCTACTGGGGCCGCCCTTGTCCATAATGCGTGGCCTGATCCCGCCAAGTTTCCCAAGATGATT TGGGGCACAAACTACAATCGCCTCGCTGCCGCCACAATCTTCACTCTCTTCTTCGCCGGCAAGGATTTCGCCCCC AAGTGTGTCATCGACGGTGTCAACATCCAGGATTACCTGCAGACGCATTTTTTCAGAGCCTGCGCCCACCTTTCT AGGCGCATTCACGAGGCCGGCGATCTTGAAGACCAGGTTGTCATCGGCTGGGAGAGCCTCAATGAACCCAACAAG GGCATGATCGGCCATGCTGACCTGAGCACGATTCCCAAGGAGTTATACTTGAAAAAGGGCACCTGCCCGACCCTT TGGCAGACCATGTTGAACGGCATGGGCAGAGCCTGCGAGGTCGACACCTGGGACATGGGTGGCATGGGCCCCTAC AAGACGGGCACCGCCCTCATCGACCCTCACGGTCAGGTTGCCTGGCTATCTCCAGATTACGACGACTCCCGCTAC GGCTGGACTCGACATCCCGATTGGCGCCTCGGGGAGTGTATCTGGGCTCAGCATGGCGTGTGGGATCCTGACACC GACACCCTTCTGAGAAAGGACTATTTTGCCAAGAATCCCCATACCGGCGTCACCATCGACTATCCCGAGTTCACG AACACGTACTTTATGGACTTTTTCAGGTCTTACCGTCAGGCTTGTCGCGCTCATCACTCTGGTTGCATCATGCTG CTGCAATATCCGACACTGGAACTCCCGCCGCTCATCAAGGGCACGGCCGACGACGATCATCGCATGGCCTTTACG CCGCATTACTATGACGGCATCACCCTCATGACCAAACACTGGAATAGCATATGGAACGTCGATGTCGTAGGCGTT CTTCGTGGCAAATATCTCCACCCAGCTTTTGCCATCAAGATCGGCGAGTCGGCAATCCGCAACTGCCTCAAGGAG CAGCTGGCGACGCTGCGACAAGAGGGCATTGACCGGACGGGCAACCATCCTTGCATCCTCTCCGAGTTTGGTATC CCGTTTGACATGGACGACAAGAAGGCCTATAAGACGGGTGACTACACGAGCCAGACGGCCGCGCTTGACGCCAAC TACTACGGCGTCGAAGGCTCTCAGATGGAGGGCCACTGCCTGTGGCTTTATTGCGTCACCAATGACCACGAGCAA GGCGACCAATGGAACGGCGAAGACTTGTCGATTTGCTCCGTCGACGACAAGCTACCGCCGCAGTCTCCGGCCGTC ACGAAAGGCTTTTCTGCCACCAACGGCGAAAGCGGTGACGACGAGACCGTCACGCCGGGAAATCTCCGTCGTGCC CTTACCAATCCATCCATCAGCTCCGGCCCCTCGATCAAGGACCCCGAGCTTACCAACACGCCGGGCTTTCGAGCG GCCGAGGCCTTCATCCGACCGACGCCAACTGCGGTGGCGGGAGACGTCGTCTCATCCGGCTTCGATATGCGCCGT TGCGTCTTCGAGCTCCGGCTTCGAGCGTCGAAGGCACCAGCCGACGAGGCCCCCACCACCGTCTTCCTGCCCGAG TTCCACTTCCCCTCAGAGCGGTGCGAGGTGACGGTCTCGTCCGGCAAATGGGAGATTAGCTCGACCGAGGACGAG GGGACGAGGCTGCAGAGGTTGCGATGGTGGCATGACGAGGGCGAGCAGCACTTGACGGTTCGGGGGTTGGTCCGG AAGCTCAACGCGCCGCAGGGCTCGGCGGAGGAGATGGGCTACTTGGAGCAGTGTCAGCAGATGTATCTGAACATG GGAAGCTGTTGCGTCATGTAA |