© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5645 |
| Gene name | |
| Location | scaffold_468:11832..12888 |
| Strand | - |
| Gene length (bp) | 1056 |
| Transcript length (bp) | 840 |
| Coding sequence length (bp) | 837 |
| Protein length (aa) | 279 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1808 | 0.167 | 0.4627 | 0.4672 | 0.1344 | 0.015 | 0.2375 | 0.5524 | 0.3293 | 0.0188 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 190 | 212 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 66.74 | 34.38 | 99.11 |
| CcL | In ants, during behavior modification | 8.33 | 2.16 | 14.50 |
| CcD | In ants, recently dead | 10.16 | 2.94 | 17.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.000286 | yes |
| CcL | CcD | 0.621624 | no |
| Orthofinder run ID | 4 |
| Orthogroup | 16082 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps kimflemingae | Ophio5|5645 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5645 MLGNRLRQHTRLDITRRLGQGTTIRDKPVFTNSHSGDDDSAMRQNAHSPLPLRHQRALHAHAVLARADEAPPTSP PSPESAVTASASDSNSTPSPDGFDSPSPSPSPSPSSSSGPTSSGTGPTSGPACFTTTTLTTTTCPLQSSGFGTCT TTVLSSSACAPGLYCTTHTASSNNNTATTICMRRQDAPDLIITVVFAAITFLGLVGLIFSCCRDSFRRRARSGQQ IAVDDAKMTSGSGSKAAHRPLMPREEDDEDDLGANPFLDDHHVNPEPYHHLQGK |
| Coding | >Ophio5|5645 ATGCTCGGCAATCGCCTCAGGCAACACACGCGGCTCGACATCACAAGACGTCTAGGGCAAGGAACAACGATAAGG GACAAACCAGTCTTCACCAACAGCCATTCAGGAGACGACGACTCCGCCATGCGCCAAAACGCCCACTCCCCTCTT CCCCTCCGCCACCAACGCGCCCTTCACGCCCACGCCGTCCTCGCCCGCGCCGACGAAGCTCCTCCGACGTCTCCT CCTTCGCCGGAAAGCGCCGTCACCGCCTCGGCGTCCGACAGCAACAGCACCCCCAGCCCGGACGGCTTTGACTCC CCCTCCCCCTCCCCCTCCCCCTCCCCCTCCTCTTCATCCGGCCCCACCTCCTCCGGCACGGGCCCCACCTCGGGC CCGGCCTGCTTCACCACCACCACCCTGACAACGACAACCTGCCCTCTCCAATCCTCCGGCTTCGGGACCTGCACC ACCACCGTTCTTTCATCCAGCGCCTGCGCCCCAGGCCTGTACTGCACAACCCACACCGCCTCCTCCAACAATAAC ACGGCCACCACCATCTGCATGCGCCGCCAAGACGCCCCTGACCTCATCATAACCGTCGTCTTCGCCGCCATCACC TTTTTAGGTCTCGTCGGCCTCATCTTCTCCTGCTGTCGCGATAGCTTCCGTCGCCGCGCCAGGTCGGGACAGCAA ATCGCCGTCGACGACGCCAAGATGACCTCCGGCAGTGGCAGCAAGGCCGCTCATCGGCCGCTCATGCCGCGTGAG GAGGACGACGAAGACGATCTTGGTGCGAATCCTTTCCTCGATGACCATCATGTGAATCCTGAGCCCTACCATCAC CTTCAGGGGAAG |
| Transcript | >Ophio5|5645 ATGCTCGGCAATCGCCTCAGGCAACACACGCGGCTCGACATCACAAGACGTCTAGGGCAAGGAACAACGATAAGG GACAAACCAGTCTTCACCAACAGCCATTCAGGAGACGACGACTCCGCCATGCGCCAAAACGCCCACTCCCCTCTT CCCCTCCGCCACCAACGCGCCCTTCACGCCCACGCCGTCCTCGCCCGCGCCGACGAAGCTCCTCCGACGTCTCCT CCTTCGCCGGAAAGCGCCGTCACCGCCTCGGCGTCCGACAGCAACAGCACCCCCAGCCCGGACGGCTTTGACTCC CCCTCCCCCTCCCCCTCCCCCTCCCCCTCCTCTTCATCCGGCCCCACCTCCTCCGGCACGGGCCCCACCTCGGGC CCGGCCTGCTTCACCACCACCACCCTGACAACGACAACCTGCCCTCTCCAATCCTCCGGCTTCGGGACCTGCACC ACCACCGTTCTTTCATCCAGCGCCTGCGCCCCAGGCCTGTACTGCACAACCCACACCGCCTCCTCCAACAATAAC ACGGCCACCACCATCTGCATGCGCCGCCAAGACGCCCCTGACCTCATCATAACCGTCGTCTTCGCCGCCATCACC TTTTTAGGTCTCGTCGGCCTCATCTTCTCCTGCTGTCGCGATAGCTTCCGTCGCCGCGCCAGGTCGGGACAGCAA ATCGCCGTCGACGACGCCAAGATGACCTCCGGCAGTGGCAGCAAGGCCGCTCATCGGCCGCTCATGCCGCGTGAG GAGGACGACGAAGACGATCTTGGTGCGAATCCTTTCCTCGATGACCATCATGTGAATCCTGAGCCCTACCATCAC CTTCAGGGGAAGTGA |
| Gene | >Ophio5|5645 ATGCTCGGCAATCGCCTCAGGCAACGTGAGACACCACACCAGTTCGGTCCATTCTCCCTCCCCCATATCCTTCTT TTTTTTTTTGACTCTTTCTTTCCCTCGTATTTTTTTTCCCCCCCCTCTCTGACGCCATTTCTCTACTGACTCCCT GATCTTCTTTCTGGCGACCGGCATCTTCGGGGGGACTCGCATCTCGACCTGTTTGCTTCTTGATTGGTACTACCA CACAAACCTCTCTTAGACACGCGGCTCGACATCACAAGACGTCTAGGGCAAGGAACAACGATAAGGGACAAACCA GTCTTCACCAACAGCCATTCAGGAGACGACGACTCCGCCATGCGCCAAAACGCCCACTCCCCTCTTCCCCTCCGC CACCAACGCGCCCTTCACGCCCACGCCGTCCTCGCCCGCGCCGACGAAGCTCCTCCGACGTCTCCTCCTTCGCCG GAAAGCGCCGTCACCGCCTCGGCGTCCGACAGCAACAGCACCCCCAGCCCGGACGGCTTTGACTCCCCCTCCCCC TCCCCCTCCCCCTCCCCCTCCTCTTCATCCGGCCCCACCTCCTCCGGCACGGGCCCCACCTCGGGCCCGGCCTGC TTCACCACCACCACCCTGACAACGACAACCTGCCCTCTCCAATCCTCCGGCTTCGGGACCTGCACCACCACCGTT CTTTCATCCAGCGCCTGCGCCCCAGGCCTGTACTGCACAACCCACACCGCCTCCTCCAACAATAACACGGCCACC ACCATCTGCATGCGCCGCCAAGACGCCCCTGACCTCATCATAACCGTCGTCTTCGCCGCCATCACCTTTTTAGGT CTCGTCGGCCTCATCTTCTCCTGCTGTCGCGATAGCTTCCGTCGCCGCGCCAGGTCGGGACAGCAAATCGCCGTC GACGACGCCAAGATGACCTCCGGCAGTGGCAGCAAGGCCGCTCATCGGCCGCTCATGCCGCGTGAGGAGGACGAC GAAGACGATCTTGGTGCGAATCCTTTCCTCGATGACCATCATGTGAATCCTGAGCCCTACCATCACCTTCAGGGG AAGTGA |