Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5629
Gene name
Locationscaffold_466:6598..7329
Strand-
Gene length (bp)731
Transcript length (bp)675
Coding sequence length (bp)672
Protein length (aa) 224

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01084 Ribosomal_S18 Ribosomal protein S18 7.5E-11 151 195

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P40033|RSM18_YEAST 37S ribosomal protein RSM18, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM18 PE=1 SV=2 84 195 5.0E-11
sp|A6ZR01|RSM18_YEAS7 37S ribosomal protein RSM18, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=RSM18 PE=3 SV=1 84 195 5.0E-11
sp|B5VHI3|RSM18_YEAS6 37S ribosomal protein RSM18, mitochondrial OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RSM18 PE=3 SV=2 84 195 5.0E-11
sp|B3LS63|RSM18_YEAS1 37S ribosomal protein RSM18, mitochondrial OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RSM18 PE=3 SV=2 84 195 5.0E-11
sp|Q1GC35|RS18_LACDA 30S ribosomal protein S18 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / JCM 1002 / NBRC 13953 / NCIMB 11778) GN=rpsR PE=3 SV=1 140 199 6.0E-06

GO

GO Term Description Terminal node
GO:0005840 ribosome Yes
GO:0003735 structural constituent of ribosome Yes
GO:0006412 translation Yes
GO:0006518 peptide metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0003674 molecular_function No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0043226 organelle No
GO:1901576 organic substance biosynthetic process No
GO:0034645 cellular macromolecule biosynthetic process No
GO:0044238 primary metabolic process No
GO:1901566 organonitrogen compound biosynthetic process No
GO:0043232 intracellular non-membrane-bounded organelle No
GO:0043228 non-membrane-bounded organelle No
GO:1901564 organonitrogen compound metabolic process No
GO:0008150 biological_process No
GO:0043170 macromolecule metabolic process No
GO:0071704 organic substance metabolic process No
GO:0009058 biosynthetic process No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0043603 cellular amide metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:0019538 protein metabolic process No
GO:0043229 intracellular organelle No
GO:0009059 macromolecule biosynthetic process No
GO:0005575 cellular_component No
GO:0005198 structural molecule activity No
GO:0043043 peptide biosynthetic process No
GO:0006807 nitrogen compound metabolic process No
GO:0043604 amide biosynthetic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0044249 cellular biosynthetic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.0893 0.1663 0.0459 0.0579 0.9675 0.0676 0.0404 0.0166 0.0203 0.0068

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Orthologs

Orthofinder run ID4
Orthogroup2160
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|4163
Ophiocordyceps australis map64 (Brazil) OphauB2|6413
Ophiocordyceps camponoti-floridani Ophcf2|05388
Ophiocordyceps camponoti-rufipedis Ophun1|4339
Ophiocordyceps kimflemingae Ophio5|5629 (this protein)
Ophiocordyceps subramaniannii Hirsu2|2662

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5629
MPPRLLPPTIRALTKFPGLTRTVTTNTSVYTIPSPQAGHNSSSSTRLSNLGAQAKTPPGGPPTRGPPGHRAAHRF
LVRAVEQTKQNEDIVKSMSKKQQAEDLHRRMPRRFDPGEVYSPHDLSPVEMWKWRRRTARRGDVVDALGLRPLDM
YKNFSLIQDFTTSSGQIQPASVTGLRPVNQRKIAKMVRRVQGMGIYPTIHDHPEALRARFFGAESSWEDKDDNR
Coding >Ophio5|5629
ATGCCGCCACGACTTCTTCCTCCAACCATCCGTGCTCTCACAAAATTCCCTGGCCTCACCCGTACCGTCACAACA
AACACATCAGTCTACACCATCCCCTCCCCACAAGCCGGCCACAACTCATCGTCAAGCACCCGTCTCAGCAATCTC
GGCGCACAAGCGAAAACCCCTCCCGGTGGTCCTCCCACACGCGGCCCCCCAGGACATCGTGCGGCACATCGCTTC
CTTGTGCGCGCCGTCGAACAAACCAAACAAAACGAGGACATCGTCAAGTCCATGTCCAAGAAGCAACAGGCCGAG
GATCTTCACAGGCGCATGCCCCGTCGTTTCGATCCCGGCGAGGTCTACTCTCCTCACGATCTTAGCCCCGTTGAG
ATGTGGAAGTGGCGCCGTAGGACGGCGCGGAGGGGCGACGTCGTCGATGCCCTCGGCCTTCGGCCGCTCGACATG
TATAAGAACTTTTCTCTCATCCAAGACTTTACAACATCGTCTGGTCAGATCCAGCCCGCGTCCGTCACCGGCCTG
CGTCCCGTCAACCAGCGCAAGATTGCAAAAATGGTTCGTCGCGTCCAAGGCATGGGCATCTATCCCACCATCCAC
GACCATCCCGAGGCCCTGCGCGCCAGATTCTTTGGCGCCGAGTCCAGTTGGGAAGATAAAGACGACAACAGG
Transcript >Ophio5|5629
ATGCCGCCACGACTTCTTCCTCCAACCATCCGTGCTCTCACAAAATTCCCTGGCCTCACCCGTACCGTCACAACA
AACACATCAGTCTACACCATCCCCTCCCCACAAGCCGGCCACAACTCATCGTCAAGCACCCGTCTCAGCAATCTC
GGCGCACAAGCGAAAACCCCTCCCGGTGGTCCTCCCACACGCGGCCCCCCAGGACATCGTGCGGCACATCGCTTC
CTTGTGCGCGCCGTCGAACAAACCAAACAAAACGAGGACATCGTCAAGTCCATGTCCAAGAAGCAACAGGCCGAG
GATCTTCACAGGCGCATGCCCCGTCGTTTCGATCCCGGCGAGGTCTACTCTCCTCACGATCTTAGCCCCGTTGAG
ATGTGGAAGTGGCGCCGTAGGACGGCGCGGAGGGGCGACGTCGTCGATGCCCTCGGCCTTCGGCCGCTCGACATG
TATAAGAACTTTTCTCTCATCCAAGACTTTACAACATCGTCTGGTCAGATCCAGCCCGCGTCCGTCACCGGCCTG
CGTCCCGTCAACCAGCGCAAGATTGCAAAAATGGTTCGTCGCGTCCAAGGCATGGGCATCTATCCCACCATCCAC
GACCATCCCGAGGCCCTGCGCGCCAGATTCTTTGGCGCCGAGTCCAGTTGGGAAGATAAAGACGACAACAGGTAG
Gene >Ophio5|5629
ATGCCGCCACGACTTCTTCCTCCAACCATCCGTGCTCTCACAAAATTCCCTGGCCTCACCCGTACCGTCACAACA
AACACATCAGTCTACACCATCCCCTCCCCACAAGCCGGCCACAACTCATCGTCAAGCACCCGTCTCAGCAATCTC
GGCGCACAAGCGAAAACCCCTCCCGGTGGTCCTCCCACACGCGGCCCCCCAGGACATCGTGCGGCACATCGCTTC
CTTGTGCGCGCCGTCGAACAAACCAAACAAAACGAGGACATCGTCAAGTCCATGTCCAAGAAGCAACAGGCCGAG
GATCTTCACAGGCGCATGCCCCGTCGTTTCGATCCCGGCGAGGTCTACTCTCCTCACGATCTTAGCCCCGTTGAG
ATGTGGAAGTGGCGCCGTAGGACGGCGCGGAGGGGCGACGTCGTCGATGCCCTCGGCCTTCGGCCGCTCGACATG
TATAAGGTGCGTTCATGTGGTCCCCATCTACGGAGCCTTTAAGCTGATGTGTCGTCGGACAGAACTTTTCTCTCA
TCCAAGACTTTACAACATCGTCTGGTCAGATCCAGCCCGCGTCCGTCACCGGCCTGCGTCCCGTCAACCAGCGCA
AGATTGCAAAAATGGTTCGTCGCGTCCAAGGCATGGGCATCTATCCCACCATCCACGACCATCCCGAGGCCCTGC
GCGCCAGATTCTTTGGCGCCGAGTCCAGTTGGGAAGATAAAGACGACAACAGGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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