© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5612 |
| Gene name | |
| Location | scaffold_463:14593..16601 |
| Strand | - |
| Gene length (bp) | 2008 |
| Transcript length (bp) | 1707 |
| Coding sequence length (bp) | 1704 |
| Protein length (aa) | 568 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03055 | RPE65 | Retinal pigment epithelial membrane protein | 1.9E-96 | 54 | 558 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9YGX2|RPE65_CHICK | Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1 | 163 | 555 | 8.0E-32 |
| sp|Q9JJS6|BCDO1_MOUSE | Beta,beta-carotene 15,15'-dioxygenase OS=Mus musculus GN=Bco1 PE=1 SV=2 | 22 | 558 | 2.0E-29 |
| sp|Q91XT5|BCDO1_RAT | Beta,beta-carotene 15,15'-dioxygenase OS=Rattus norvegicus GN=Bco1 PE=2 SV=1 | 160 | 558 | 2.0E-27 |
| sp|Q91ZQ5|RPE65_MOUSE | Retinoid isomerohydrolase OS=Mus musculus GN=Rpe65 PE=1 SV=4 | 163 | 555 | 6.0E-27 |
| sp|Q9TVB8|RPE65_CANLF | Retinoid isomerohydrolase OS=Canis lupus familiaris GN=RPE65 PE=1 SV=3 | 163 | 555 | 1.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9YGX2|RPE65_CHICK | Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1 | 163 | 555 | 8.0E-32 |
| sp|Q9JJS6|BCDO1_MOUSE | Beta,beta-carotene 15,15'-dioxygenase OS=Mus musculus GN=Bco1 PE=1 SV=2 | 22 | 558 | 2.0E-29 |
| sp|Q91XT5|BCDO1_RAT | Beta,beta-carotene 15,15'-dioxygenase OS=Rattus norvegicus GN=Bco1 PE=2 SV=1 | 160 | 558 | 2.0E-27 |
| sp|Q91ZQ5|RPE65_MOUSE | Retinoid isomerohydrolase OS=Mus musculus GN=Rpe65 PE=1 SV=4 | 163 | 555 | 6.0E-27 |
| sp|Q9TVB8|RPE65_CANLF | Retinoid isomerohydrolase OS=Canis lupus familiaris GN=RPE65 PE=1 SV=3 | 163 | 555 | 1.0E-26 |
| sp|Q16518|RPE65_HUMAN | Retinoid isomerohydrolase OS=Homo sapiens GN=RPE65 PE=1 SV=3 | 163 | 555 | 1.0E-26 |
| sp|Q9HAY6|BCDO1_HUMAN | Beta,beta-carotene 15,15'-dioxygenase OS=Homo sapiens GN=BCO1 PE=1 SV=1 | 160 | 555 | 2.0E-26 |
| sp|Q9XT71|RPE65_CHLAE | Retinoid isomerohydrolase OS=Chlorocebus aethiops GN=RPE65 PE=2 SV=3 | 163 | 555 | 4.0E-26 |
| sp|O70276|RPE65_RAT | Retinoid isomerohydrolase OS=Rattus norvegicus GN=Rpe65 PE=2 SV=4 | 163 | 558 | 6.0E-26 |
| sp|Q99NF1|BCDO2_MOUSE | Beta,beta-carotene 9',10'-oxygenase OS=Mus musculus GN=Bco2 PE=1 SV=1 | 56 | 558 | 4.0E-25 |
| sp|Q28175|RPE65_BOVIN | Retinoid isomerohydrolase OS=Bos taurus GN=RPE65 PE=1 SV=3 | 163 | 555 | 4.0E-25 |
| sp|Q6PBW5|RP65A_DANRE | Retinoid isomerohydrolase OS=Danio rerio GN=rpe65a PE=2 SV=1 | 64 | 558 | 8.0E-25 |
| sp|Q8HXG8|BCDO2_MACFA | Beta,beta-carotene 9',10'-oxygenase OS=Macaca fascicularis GN=BCO2 PE=2 SV=2 | 81 | 558 | 1.0E-24 |
| sp|Q8AXN9|RPE65_CYNPY | Retinoid isomerohydrolase OS=Cynops pyrrhogaster GN=RPE65 PE=2 SV=3 | 163 | 559 | 3.0E-24 |
| sp|Q9YI25|RPE65_AMBTI | Retinoid isomerohydrolase OS=Ambystoma tigrinum GN=RPE65 PE=2 SV=3 | 163 | 559 | 5.0E-24 |
| sp|Q5RF16|BCDO2_PONAB | Beta,beta-carotene 9',10'-oxygenase OS=Pongo abelii GN=BCO2 PE=2 SV=1 | 81 | 558 | 8.0E-24 |
| sp|A9C3R9|RP65B_DANRE | All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio GN=rpe65b PE=1 SV=1 | 160 | 558 | 2.0E-22 |
| sp|A9C3R8|RP65C_DANRE | Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c PE=1 SV=1 | 160 | 558 | 8.0E-22 |
| sp|Q9BYV7|BCDO2_HUMAN | Beta,beta-carotene 9',10'-oxygenase OS=Homo sapiens GN=BCO2 PE=1 SV=5 | 81 | 558 | 1.0E-21 |
| sp|Q9I993|BCDO1_CHICK | Beta,beta-carotene 15,15'-dioxygenase OS=Gallus gallus GN=BCO1 PE=1 SV=1 | 163 | 558 | 2.0E-21 |
| sp|Q8VY26|CCD8_ARATH | Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=1 SV=1 | 225 | 558 | 2.0E-19 |
| sp|Q8LIY8|CCD8B_ORYSJ | Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic OS=Oryza sativa subsp. japonica GN=CCD8B PE=1 SV=1 | 137 | 558 | 2.0E-19 |
| sp|Q93VD5|CCD8A_ORYSJ | Carotenoid cleavage dioxygenase 8 homolog A, chloroplastic OS=Oryza sativa subsp. japonica GN=CCD8A PE=2 SV=1 | 443 | 559 | 3.0E-17 |
| sp|A8Y9I2|NINAB_GALME | Carotenoid isomerooxygenase OS=Galleria mellonella GN=ninaB PE=1 SV=1 | 248 | 542 | 3.0E-17 |
| sp|P74334|ACOX_SYNY3 | Apocarotenoid-15,15'-oxygenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1541 PE=1 SV=1 | 251 | 554 | 1.0E-13 |
| sp|P9WPR5|CCO_MYCTU | Carotenoid cleavage oxygenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv0654 PE=1 SV=1 | 201 | 558 | 2.0E-10 |
| sp|P9WPR4|CCO_MYCTO | Carotenoid cleavage oxygenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT0683 PE=3 SV=1 | 201 | 558 | 2.0E-10 |
| sp|Q9VFS2|NINAB_DROME | Carotenoid isomerooxygenase OS=Drosophila melanogaster GN=ninaB PE=1 SV=1 | 453 | 558 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0051213 | dioxygenase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 16.89 | 7.90 | 25.89 |
| CcL | In ants, during behavior modification | 2.76 | 0.59 | 4.94 |
| CcD | In ants, recently dead | 11.28 | 4.60 | 17.96 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.000286 | yes |
| SC16a | CcD | 0.155550 | no |
| CcL | CcD | 0.000286 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5612 METGRVMHRGAADENSDAEAMMARLEEGAWREWPNRAGFEGLVEHRGPIRLRVSVSVIYSSRRQSDEYVEHIRRV GWRSSTSFGQRADPCVGIFAKLMSLFVPRRMNTNVICLPNLPGLPSVGSCATEKTSPPPISSSSTTTTTTTTTKA DDARQRTGTKSIFISTDHAYLQEISPDTMEPLGYTSQHALHPDLAGPLSCAHAQRDPVTGDWFNYNLALGRVATY RIFRVNAADGTTDVLATVSAPDLPAAYIHSFFLTENYVVLCIPGAHFAWNGLKILWERNIVDAIKPFDESRPCQW LVVDRRHGRGLLCRFTTPAAFFFHSVNAFEDMVKDESDGVAAVDLCLDAVFYDNTDVIFALYYDVLLNRDNAMGK FVDDGRYQKVRNRLTRYRFRMPTSTTTSTTTTTTTSTTTTTTTTDETNNNNNKQAELVFSIPNPHSGELSTINPG RAGRPYRFVYGISTRGVSTFMDSIVKTDVETRDALLWTGPWGHTPGEPVFVPRPGASAEDDGVVLSVVLDGAAKK SYLLCLDASTMHEMARAETDFAIAIGFHGFHAPALSGADGRVD |
| Coding | >Ophio5|5612 ATGGAGACTGGCCGCGTAATGCACCGCGGCGCGGCGGACGAAAACTCAGACGCGGAAGCGATGATGGCCCGTTTG GAAGAAGGCGCTTGGCGAGAGTGGCCGAACCGGGCCGGGTTCGAGGGACTGGTGGAGCATCGGGGACCGATCCGG CTGCGGGTGTCCGTCTCCGTCATCTACTCATCCCGTCGCCAGTCGGATGAATACGTCGAGCATATCCGTCGGGTG GGATGGCGGTCCAGCACCTCGTTCGGTCAGAGGGCCGACCCGTGCGTCGGCATCTTTGCCAAGCTCATGAGCCTC TTCGTGCCCCGAAGAATGAACACCAATGTCATTTGTTTGCCCAACTTGCCCGGCCTTCCTAGTGTGGGGAGTTGT GCGACGGAAAAGACGTCACCGCCCCCTATTTCTTCCTCTTCTACCACGACTACGACTACGACTACGACCAAGGCC GACGACGCCCGTCAACGCACAGGGACCAAATCCATCTTCATCAGTACCGACCACGCCTACCTTCAGGAAATCAGT CCGGACACGATGGAGCCTCTGGGTTACACCAGCCAACACGCCCTTCATCCGGACCTAGCAGGACCCCTATCGTGC GCGCACGCGCAGAGGGATCCCGTGACGGGCGACTGGTTCAACTACAACCTAGCCCTGGGCCGGGTGGCCACCTAT CGCATCTTCCGAGTCAACGCGGCAGACGGAACGACGGATGTTCTGGCTACCGTGTCGGCACCGGATCTACCCGCC GCCTACATACACAGCTTCTTCCTGACGGAAAATTACGTCGTCTTGTGTATCCCCGGAGCGCACTTTGCCTGGAAC GGGCTCAAGATTCTCTGGGAGAGGAACATCGTCGATGCCATTAAGCCCTTTGACGAATCGAGACCTTGTCAGTGG CTCGTCGTTGATCGTCGTCACGGTAGGGGATTGCTTTGTCGCTTCACTACGCCCGCTGCGTTTTTCTTTCATTCT GTCAACGCCTTTGAGGACATGGTCAAAGATGAGTCGGACGGGGTCGCCGCCGTCGACTTGTGTCTCGATGCCGTC TTTTACGACAACACCGACGTCATCTTTGCCCTATACTACGATGTTCTTCTCAACCGGGACAACGCCATGGGCAAG TTCGTCGACGACGGCCGCTATCAAAAGGTACGCAACCGTCTGACGCGGTACCGGTTCCGTATGCCGACGAGCACG ACGACGAGCACGACGACGACGACGACGACGAGCACGACGACGACGACGACGACGACAGACGAGACGAACAACAAC AACAACAAACAGGCCGAACTAGTCTTCTCCATCCCCAACCCGCACTCAGGCGAGCTATCGACCATCAATCCCGGA CGCGCCGGCCGACCCTACCGCTTCGTCTACGGCATCAGCACCCGAGGCGTGAGCACCTTCATGGACTCCATCGTC AAAACCGACGTCGAGACGCGCGACGCCCTACTCTGGACCGGACCCTGGGGTCACACCCCCGGCGAGCCCGTCTTC GTACCCCGGCCCGGAGCGTCGGCCGAGGATGACGGCGTCGTCTTGTCTGTCGTCCTCGACGGCGCCGCTAAAAAG TCCTATCTTTTGTGTCTTGATGCGAGTACCATGCACGAGATGGCCAGGGCCGAGACCGACTTTGCTATCGCTATT GGCTTCCATGGCTTTCATGCCCCGGCTTTGTCGGGTGCGGATGGACGAGTGGAT |
| Transcript | >Ophio5|5612 ATGGAGACTGGCCGCGTAATGCACCGCGGCGCGGCGGACGAAAACTCAGACGCGGAAGCGATGATGGCCCGTTTG GAAGAAGGCGCTTGGCGAGAGTGGCCGAACCGGGCCGGGTTCGAGGGACTGGTGGAGCATCGGGGACCGATCCGG CTGCGGGTGTCCGTCTCCGTCATCTACTCATCCCGTCGCCAGTCGGATGAATACGTCGAGCATATCCGTCGGGTG GGATGGCGGTCCAGCACCTCGTTCGGTCAGAGGGCCGACCCGTGCGTCGGCATCTTTGCCAAGCTCATGAGCCTC TTCGTGCCCCGAAGAATGAACACCAATGTCATTTGTTTGCCCAACTTGCCCGGCCTTCCTAGTGTGGGGAGTTGT GCGACGGAAAAGACGTCACCGCCCCCTATTTCTTCCTCTTCTACCACGACTACGACTACGACTACGACCAAGGCC GACGACGCCCGTCAACGCACAGGGACCAAATCCATCTTCATCAGTACCGACCACGCCTACCTTCAGGAAATCAGT CCGGACACGATGGAGCCTCTGGGTTACACCAGCCAACACGCCCTTCATCCGGACCTAGCAGGACCCCTATCGTGC GCGCACGCGCAGAGGGATCCCGTGACGGGCGACTGGTTCAACTACAACCTAGCCCTGGGCCGGGTGGCCACCTAT CGCATCTTCCGAGTCAACGCGGCAGACGGAACGACGGATGTTCTGGCTACCGTGTCGGCACCGGATCTACCCGCC GCCTACATACACAGCTTCTTCCTGACGGAAAATTACGTCGTCTTGTGTATCCCCGGAGCGCACTTTGCCTGGAAC GGGCTCAAGATTCTCTGGGAGAGGAACATCGTCGATGCCATTAAGCCCTTTGACGAATCGAGACCTTGTCAGTGG CTCGTCGTTGATCGTCGTCACGGTAGGGGATTGCTTTGTCGCTTCACTACGCCCGCTGCGTTTTTCTTTCATTCT GTCAACGCCTTTGAGGACATGGTCAAAGATGAGTCGGACGGGGTCGCCGCCGTCGACTTGTGTCTCGATGCCGTC TTTTACGACAACACCGACGTCATCTTTGCCCTATACTACGATGTTCTTCTCAACCGGGACAACGCCATGGGCAAG TTCGTCGACGACGGCCGCTATCAAAAGGTACGCAACCGTCTGACGCGGTACCGGTTCCGTATGCCGACGAGCACG ACGACGAGCACGACGACGACGACGACGACGAGCACGACGACGACGACGACGACGACAGACGAGACGAACAACAAC AACAACAAACAGGCCGAACTAGTCTTCTCCATCCCCAACCCGCACTCAGGCGAGCTATCGACCATCAATCCCGGA CGCGCCGGCCGACCCTACCGCTTCGTCTACGGCATCAGCACCCGAGGCGTGAGCACCTTCATGGACTCCATCGTC AAAACCGACGTCGAGACGCGCGACGCCCTACTCTGGACCGGACCCTGGGGTCACACCCCCGGCGAGCCCGTCTTC GTACCCCGGCCCGGAGCGTCGGCCGAGGATGACGGCGTCGTCTTGTCTGTCGTCCTCGACGGCGCCGCTAAAAAG TCCTATCTTTTGTGTCTTGATGCGAGTACCATGCACGAGATGGCCAGGGCCGAGACCGACTTTGCTATCGCTATT GGCTTCCATGGCTTTCATGCCCCGGCTTTGTCGGGTGCGGATGGACGAGTGGATTGA |
| Gene | >Ophio5|5612 ATGGAGACTGGCCGCGTAATGCACCGCGGCGCGGCGGACGAAAACTCAGACGCGGAAGCGATGATGGCCCGTTTG GAAGAAGGCGCTTGGCGAGAGTGGCCGAACCGGGCCGGGTTCGAGGGACTGGTGGAGCATCGGGGACCGATCCGG CTGCGGGTGGTGGGTGAGATTCCTTGGTGGGCGGCGGGATCGTTGTATCGCACGGGACCGGGACAAAGTGCGATT GAGAATACGGTCAACGGGACGCATTTCGTCTCGCATTGGTTTGATGGCTTTGCTCATTCTCATCGGTTTGATATC GTTGTCGAAGGGGGGGGGAACGACGACGACGACGACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNAGAAGAAGAAGAAGATGATGACAAGGACGACAAAGGGAAGAAAAAAAAGAC CAGAAAACAGTCCGTCTCCGTCATCTACTCATCCCGTCGCCAGTCGGATGAATACGTCGAGCATATCCGTCGGGT GGGATGGCGGTCCAGCACCTCGTTCGGTCAGAGGGCCGACCCGTGCGTCGGCATCTTTGCCAAGCTCATGAGCCT CTTCGTGCCCCGAAGAATGAACACCAATGTCATTTGTTTGCCCAACTTGCCCGGCCTTCCTAGTGTGGGGAGTTG TGCGACGGAAAAGACGTCACCGCCCCCTATTTCTTCCTCTTCTACCACGACTACGACTACGACTACGACCAAGGC CGACGACGCCCGTCAACGCACAGGGACCAAATCCATCTTCATCAGTACCGACCACGCCTACCTTCAGGAAATCAG TCCGGACACGATGGAGCCTCTGGGTTACACCAGCCAACACGCCCTTCATCCGGACCTAGCAGGACCCCTATCGTG CGCGCACGCGCAGAGGGATCCCGTGACGGGCGACTGGTTCAACTACAACCTAGCCCTGGGCCGGGTGGCCACCTA TCGCATCTTCCGAGTCAACGCGGCAGACGGAACGACGGATGTTCTGGCTACCGTGTCGGCACCGGATCTACCCGC CGCCTACATACACAGCTTCTTCCTGACGGAAAATTACGTCGTCTTGTGTATCCCCGGAGCGCACTTTGCCTGGAA CGGGCTCAAGATTCTCTGGGAGAGGAACATCGTCGATGCCATTAAGCCCTTTGACGAATCGAGACCTTGTCAGTG GCTCGTCGTTGATCGTCGTCACGGTAGGGGATTGCTTTGTCGCTTCACTACGCCCGCTGCGTTTTTCTTTCATTC TGTCAACGCCTTTGAGGACATGGTCAAAGATGAGTCGGACGGGGTCGCCGCCGTCGACTTGTGTCTCGATGCCGT CTTTTACGACAACACCGACGTCATCTTTGCCCTATACTACGATGTTCTTCTCAACCGGGACAACGCCATGGGCAA GTTCGTCGACGACGGCCGCTATCAAAAGGTACGCAACCGTCTGACGCGGTACCGGTTCCGTATGCCGACGAGCAC GACGACGAGCACGACGACGACGACGACGACGAGCACGACGACGACGACGACGACGACAGACGAGACGAACAACAA CAACAACAAACAGGCCGAACTAGTCTTCTCCATCCCCAACCCGCACTCAGGCGAGCTATCGACCATCAATCCCGG ACGCGCCGGCCGACCCTACCGCTTCGTCTACGGCATCAGCACCCGAGGCGTGAGCACCTTCATGGACTCCATCGT CAAAACCGACGTCGAGACGCGCGACGCCCTACTCTGGACCGGACCCTGGGGTCACACCCCCGGCGAGCCCGTCTT CGTACCCCGGCCCGGAGCGTCGGCCGAGGATGACGGCGTCGTCTTGTCTGTCGTCCTCGACGGCGCCGCTAAAAA GTCCTATCTTTTGTGTCTTGATGCGAGTACCATGCACGAGATGGCCAGGGCCGAGACCGACTTTGCTATCGCTAT TGGCTTCCATGGCTTTCATGCCCCGGCTTTGTCGGGTGCGGATGGACGAGTGGATTGA |