Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5611
Gene name
Locationscaffold_463:12199..13903
Strand-
Gene length (bp)1704
Transcript length (bp)1638
Coding sequence length (bp)1635
Protein length (aa) 545

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04506 Rft-1 Rft protein 1.1E-117 9 534

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q6C6S3|RFT1_YARLI Oligosaccharide translocation protein RFT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RFT1 PE=3 SV=1 11 467 8.0E-65
sp|Q5A6N8|RFT1_CANAL Oligosaccharide translocation protein RFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFT1 PE=3 SV=1 2 480 2.0E-62
sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1 11 479 4.0E-59
sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1 10 530 7.0E-59
sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1 10 465 3.0E-48
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Swissprot ID Swissprot Description Start End E-value
sp|Q6C6S3|RFT1_YARLI Oligosaccharide translocation protein RFT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RFT1 PE=3 SV=1 11 467 8.0E-65
sp|Q5A6N8|RFT1_CANAL Oligosaccharide translocation protein RFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFT1 PE=3 SV=1 2 480 2.0E-62
sp|P38206|RFT1_YEAST Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1 11 479 4.0E-59
sp|Q6FPE8|RFT1_CANGA Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1 10 530 7.0E-59
sp|Q754Q7|RFT1_ASHGO Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1 10 465 3.0E-48
sp|P40913|RFT1_KLULA Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2 10 464 3.0E-48
sp|O94302|RFT1_SCHPO Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1 4 478 2.0E-45
sp|Q96AA3|RFT1_HUMAN Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1 7 467 3.0E-27
sp|Q8C3B8|RFT1_MOUSE Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2 7 467 3.0E-26
sp|Q0D2E8|RFT1_XENTR Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1 12 492 3.0E-26
sp|Q54IV7|RFT1_DICDI Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1 9 448 1.0E-24
sp|Q23444|RFT1_CAEEL Protein RFT1 homolog OS=Caenorhabditis elegans GN=ZK180.3 PE=3 SV=1 3 462 2.0E-24
sp|Q9Y123|RFT1_DROME Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1 114 485 2.0E-20
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0006488 dolichol-linked oligosaccharide biosynthetic process Yes
GO:1901135 carbohydrate derivative metabolic process No
GO:0009987 cellular process No
GO:0009058 biosynthetic process No
GO:0110165 cellular anatomical entity No
GO:0071704 organic substance metabolic process No
GO:0031224 intrinsic component of membrane No
GO:0044238 primary metabolic process No
GO:1901137 carbohydrate derivative biosynthetic process No
GO:0006629 lipid metabolic process No
GO:0005575 cellular_component No
GO:1901576 organic substance biosynthetic process No
GO:0044237 cellular metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0044255 cellular lipid metabolic process No
GO:0006490 oligosaccharide-lipid intermediate biosynthetic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 79 101 22
2 106 128 22
3 140 162 22
4 167 189 22
5 342 364 22
6 379 401 22
7 413 435 22
8 440 462 22
9 475 497 22
10 512 534 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 42.10 22.90 61.29
CcL In ants, during behavior modification 45.91 25.23 66.60
CcD In ants, recently dead 31.27 16.35 46.19

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.750054 no
SC16a CcD 0.224918 no
CcL CcD 0.103454 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5611
MASSATARLRGASLLVSLQLASRLIAFLVNQLLLIRRLSAPQLGLAAKLDASAQTVLFLARDGLRVAVPRLRDPS
PQAVVNLGYLATFFGALALIVVVVFVDLGGASLPVYVVAALLELLAEPAFLLIQAKLRFGTRALAESVAGLVRCL
VVSVVVGSSSFIDDADVMPFALGQLAYALALLFVYNMAVYRLASALGFSLLPRPMSGTAFFVGGYLHRPAVRFAA
SVSAQGLVKHLLTQGDTLLVTVLASTHVQGVYALANNYGGLLARLLFQPVEESCRGYFSLLLSPEHEKQTNTDSS
DDDAARRAVKQTDPDTTSPKQQPTADSPLVEARHSLATLARLYLILSSVVVALGPVAAPPLLALVAGPRWSAAGA
GSVLAIYSLYVPFLALNGLAEAFVASVADEPQLHRQSLFMAVFSLVFAVAAFVLMRVLGFGAHGLVVANMINLLC
RICWCAVFIKAYFRRHRLTFSLTALFPRYTLGAALAVGAALARMRVLDRAESEPVLTLAKVAAWAIPLLAIIIFF
ERSLLLHCFHTVRGQEAVKR
Coding >Ophio5|5611
ATGGCCTCATCCGCCACAGCCCGTCTCCGAGGCGCCTCCCTCCTCGTCAGCCTCCAGCTCGCCTCACGACTCATC
GCCTTCCTCGTCAACCAGCTCCTACTCATCCGTCGCCTCAGCGCTCCTCAGCTCGGACTCGCCGCCAAGCTAGAC
GCTTCCGCCCAGACGGTGCTGTTCTTGGCACGCGATGGACTACGCGTCGCCGTTCCGCGCCTTCGCGATCCGTCT
CCCCAGGCCGTCGTGAATCTGGGCTATCTGGCTACTTTTTTCGGCGCTCTTGCTTTGATCGTCGTCGTCGTTTTC
GTTGACCTTGGTGGTGCTTCGTTGCCCGTCTATGTCGTCGCCGCCCTGCTGGAGCTGTTGGCGGAGCCGGCCTTT
TTACTCATCCAGGCTAAGTTGAGGTTTGGAACGCGTGCTTTGGCCGAGTCTGTCGCCGGCTTGGTTCGCTGTCTC
GTCGTCTCTGTCGTCGTTGGCTCGTCCTCCTTTATCGACGATGCAGACGTCATGCCCTTTGCGCTGGGTCAGCTC
GCCTACGCTCTGGCCCTGCTCTTCGTCTATAACATGGCCGTCTATCGTCTTGCTTCTGCCCTCGGCTTCTCCCTG
CTGCCGCGGCCCATGTCGGGCACGGCCTTCTTCGTCGGCGGATATCTGCATCGGCCCGCCGTCCGTTTCGCCGCT
TCCGTCTCCGCGCAGGGCCTTGTCAAGCACCTCCTGACGCAGGGCGACACCTTGCTCGTCACCGTGCTTGCTTCG
ACGCACGTTCAGGGTGTCTATGCGCTGGCCAACAACTACGGCGGCTTGCTGGCCCGTTTGCTCTTCCAGCCCGTC
GAGGAATCCTGTCGCGGCTACTTTTCGCTTCTGCTGTCACCGGAGCACGAAAAGCAGACCAACACCGACTCCTCC
GATGACGACGCCGCCCGCCGAGCCGTCAAGCAGACGGACCCCGATACCACATCCCCCAAGCAGCAGCCAACGGCA
GACTCGCCCCTCGTCGAAGCCCGCCACAGCCTCGCCACCCTGGCCAGGCTCTATCTCATCCTCTCCTCCGTCGTA
GTCGCCCTCGGCCCCGTCGCCGCCCCCCCGCTCCTCGCCCTCGTCGCCGGCCCCCGCTGGTCCGCCGCCGGCGCC
GGTAGCGTCCTCGCCATCTACAGCCTCTACGTGCCTTTCCTCGCCCTCAATGGTTTGGCCGAAGCCTTTGTCGCT
TCCGTTGCCGACGAGCCCCAGCTTCACCGCCAGTCTCTCTTCATGGCCGTCTTCTCCCTCGTCTTTGCCGTCGCC
GCCTTCGTCCTCATGCGCGTCTTGGGATTTGGTGCCCACGGCCTCGTCGTCGCAAACATGATCAACCTCCTCTGT
CGCATCTGCTGGTGCGCAGTCTTTATCAAGGCCTACTTTCGCCGTCATCGCCTCACCTTCTCGCTGACGGCGCTG
TTTCCGCGGTACACCCTTGGTGCCGCCCTCGCAGTCGGCGCCGCCCTCGCCCGGATGCGCGTCTTGGACCGCGCA
GAGTCTGAGCCAGTTCTCACTCTCGCCAAGGTCGCTGCTTGGGCCATTCCCTTACTTGCCATCATAATCTTCTTC
GAGAGGAGCTTGCTGCTTCACTGTTTCCACACCGTCCGCGGGCAAGAAGCCGTCAAGCGG
Transcript >Ophio5|5611
ATGGCCTCATCCGCCACAGCCCGTCTCCGAGGCGCCTCCCTCCTCGTCAGCCTCCAGCTCGCCTCACGACTCATC
GCCTTCCTCGTCAACCAGCTCCTACTCATCCGTCGCCTCAGCGCTCCTCAGCTCGGACTCGCCGCCAAGCTAGAC
GCTTCCGCCCAGACGGTGCTGTTCTTGGCACGCGATGGACTACGCGTCGCCGTTCCGCGCCTTCGCGATCCGTCT
CCCCAGGCCGTCGTGAATCTGGGCTATCTGGCTACTTTTTTCGGCGCTCTTGCTTTGATCGTCGTCGTCGTTTTC
GTTGACCTTGGTGGTGCTTCGTTGCCCGTCTATGTCGTCGCCGCCCTGCTGGAGCTGTTGGCGGAGCCGGCCTTT
TTACTCATCCAGGCTAAGTTGAGGTTTGGAACGCGTGCTTTGGCCGAGTCTGTCGCCGGCTTGGTTCGCTGTCTC
GTCGTCTCTGTCGTCGTTGGCTCGTCCTCCTTTATCGACGATGCAGACGTCATGCCCTTTGCGCTGGGTCAGCTC
GCCTACGCTCTGGCCCTGCTCTTCGTCTATAACATGGCCGTCTATCGTCTTGCTTCTGCCCTCGGCTTCTCCCTG
CTGCCGCGGCCCATGTCGGGCACGGCCTTCTTCGTCGGCGGATATCTGCATCGGCCCGCCGTCCGTTTCGCCGCT
TCCGTCTCCGCGCAGGGCCTTGTCAAGCACCTCCTGACGCAGGGCGACACCTTGCTCGTCACCGTGCTTGCTTCG
ACGCACGTTCAGGGTGTCTATGCGCTGGCCAACAACTACGGCGGCTTGCTGGCCCGTTTGCTCTTCCAGCCCGTC
GAGGAATCCTGTCGCGGCTACTTTTCGCTTCTGCTGTCACCGGAGCACGAAAAGCAGACCAACACCGACTCCTCC
GATGACGACGCCGCCCGCCGAGCCGTCAAGCAGACGGACCCCGATACCACATCCCCCAAGCAGCAGCCAACGGCA
GACTCGCCCCTCGTCGAAGCCCGCCACAGCCTCGCCACCCTGGCCAGGCTCTATCTCATCCTCTCCTCCGTCGTA
GTCGCCCTCGGCCCCGTCGCCGCCCCCCCGCTCCTCGCCCTCGTCGCCGGCCCCCGCTGGTCCGCCGCCGGCGCC
GGTAGCGTCCTCGCCATCTACAGCCTCTACGTGCCTTTCCTCGCCCTCAATGGTTTGGCCGAAGCCTTTGTCGCT
TCCGTTGCCGACGAGCCCCAGCTTCACCGCCAGTCTCTCTTCATGGCCGTCTTCTCCCTCGTCTTTGCCGTCGCC
GCCTTCGTCCTCATGCGCGTCTTGGGATTTGGTGCCCACGGCCTCGTCGTCGCAAACATGATCAACCTCCTCTGT
CGCATCTGCTGGTGCGCAGTCTTTATCAAGGCCTACTTTCGCCGTCATCGCCTCACCTTCTCGCTGACGGCGCTG
TTTCCGCGGTACACCCTTGGTGCCGCCCTCGCAGTCGGCGCCGCCCTCGCCCGGATGCGCGTCTTGGACCGCGCA
GAGTCTGAGCCAGTTCTCACTCTCGCCAAGGTCGCTGCTTGGGCCATTCCCTTACTTGCCATCATAATCTTCTTC
GAGAGGAGCTTGCTGCTTCACTGTTTCCACACCGTCCGCGGGCAAGAAGCCGTCAAGCGGTGA
Gene >Ophio5|5611
ATGGCCTCATCCGCCACAGCCCGTCTCCGAGGCGCCTCCCTCCTCGTCAGCCTCCAGCTCGCCTCACGACTCATC
GCCTTCCTCGTCAACCAGCTCCTACTCATCCGTCGCCTCAGCGCTCCTCAGCTCGGACTCGCCGCCAAGCTAGAC
GCTTCCGCCCAGACGGTGCTGTTCTTGGCACGCGATGGACTACGCGTCGCCGTTCCGCGCCTTCGCGATCCGTCT
CCCCAGGCCGTCGTGAATCTGGGCTATCTGGCTACTTTTTTCGGCGCTCTTGCTTTGATCGTCGTCGTCGTTTTC
GTTGACCTTGGTGGTGCTTCGTTGCCCGTCTATGTCGTCGCCGCCCTGCTGGAGCTGTTGGCGGAGCCGGCCTTT
TTACTCATCCAGGCTAAGTTGAGGTTTGGAACGCGTGCTTTGGCCGAGTCTGTCGCCGGCTTGGTTCGCTGTCTC
GTCGTCTCTGTCGTCGTTGGCTCGTCCTCCTTTATCGACGATGCAGACGTCATGCCCTTTGCGCTGGGTCAGCTC
GCCTACGCTCTGGCCCTGCTCTTCGTCTATAACATGGCCGTCTATCGTCTTGCTTCTGCCCTCGGCTTCTCCCTG
CTGCCGCGGCCCATGTCGGGCACGGCCTTCTTCGTCGGCGGATATCTGCATCGGCCCGCCGTCCGTTTCGCCGCT
TCCGTCTCCGCGCAGGGCCTTGTCAAGCACCTCCTGACGCAGGGCGACACCTTGCTCGTCACCGTGCTTGCTTCG
ACGCACGTTCAGGGTGTCTATGCGCTGGCCAACAACTACGGCGGCTTGCTGGCCCGTTTGCTCTTCCAGCCCGTC
GAGGAATCCTGTCGCGGCTACTTTTCGCTTCTGCTGTCACCGGAGCACGAAAAGCAGACCAACACCGACTCCTCC
GATGACGACGCCGCCCGCCGAGCCGTCAAGCAGACGGACCCCGATACCACATCCCCCAAGCAGCAGCCAACGGCA
GACTCGCCCCTCGTCGAAGCCCGCCACAGCCTCGCCACCCTGGCCAGGCTCTATCTCATCCTCTCCTCCGTCGTA
GTCGCCCTCGGCCCCGTCGCCGCCCCCCCGCTCCTCGCCCTCGTCGCCGGCCCCCGCTGGTCCGCCGCCGGCGCC
GGTAGCGTCCTCGCCATCTACAGCCTCTACGTGCCTTTCCTCGCCCTCAATGGTTTGGCCGAAGCCTTTGTCGCT
TCCGTTGCCGACGAGCCCCAGCTTCACCGCCAGTCTCTCTTCATGGCCGTCTTCTCCCTCGTCTTTGCCGTCGCC
GCCTTCGTCCTCATGCGCGTCTTGGGATTTGGTGCCCACGGCCTCGTCGTCGCAAACATGATCAACCTCCTCTGT
CGCATCTGCTGGTGCGCAGTCTTTATCAAGGCCTACTTTCGCCGTCATCGCCTCACCTTCTCGCTGACGGCGCTG
TTTCCGCGGTACACCCTTGGTGCCGCCCTCGCAGTCGGCGCCGCCCTCGCCCGGATGCGCGTCTTGGACCGCGCA
GAGTCTGAGCCAGTTCTCACTCTCGCCAAGGTCGCTGCTTGGGCCATTCCCTTACTTGCCATCATGTGCGTTGGA
TGCCTTCGTATTGTATATAAACACCCTTTATCGACTTGTACTAAGAAAATGCGCAGAATCTTCTTCGAGAGGAGC
TTGCTGCTTCACTGTTTCCACACCGTCCGCGGGCAAGAAGCCGTCAAGCGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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