Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5602
Gene name
Locationscaffold_462:9453..11093
Strand+
Gene length (bp)1640
Transcript length (bp)1593
Coding sequence length (bp)1590
Protein length (aa) 530

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1 212 388 4.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5602
MDTSIITATSVIATIATIMAITAISAIIVTDTIIATTTAIVAMDTTVMAIATTRKAASAGPDDKAEGGDKAKVAA
ESSPAATATPAAAVVAYQQPAAAPAAAPAVAVAAASPAAVAAAYQAQAPAQAQQYQAPAQAQQYQAPAQAQYQAK
AQQAPAQAQAQQYQAPAQAQQYQAPAQAQQYQAPAPAPAQAQAQYQAPAQAKAQYQAPAQAKAQYQAASQAKAQY
QAQAAAQPQAQDKAQSQDKAAIQAQDQGQTQDQAASQGPAQDKAASQGQAKAQAQASSQGQGQTRDKAAPQAQAQ
AQDKAASQAQGQTQDKAATKGQVSYLGQGQAQGQSASQGQTQGQAQDKAAPQAQGQAQDQASAQAPAQGQTQDKA
APQSQGQGQTSDKASSPAPAQGQIQDQASAQPSAQGQTQDQASAQPSAQGQTQDQASAQPSAQGQAQDQPSIQAP
APAPAQNQASAPANSGPAPAPAGGDSGAAPASAGSGASSGDSAAGGSGPSVVPTSSASQFVLGKQMVAIFGALAS
VILVL
Coding >Ophio5|5602
ATGGACACTTCCATCATCACGGCCACTTCCGTCATCGCCACCATCGCCACCATCATGGCCATCACGGCCATTTCG
GCCATCATCGTCACGGACACCATCATCGCCACCACCACGGCCATCGTGGCCATGGACACTACCGTCATGGCCATC
GCTACTACGAGGAAGGCGGCAAGTGCAGGTCCGGACGACAAGGCTGAGGGAGGCGACAAGGCCAAGGTCGCCGCC
GAGTCCTCGCCGGCTGCTACGGCAACGCCGGCCGCGGCGGTTGTCGCTTACCAGCAGCCCGCCGCGGCTCCGGCT
GCGGCTCCGGCTGTTGCTGTTGCCGCTGCGTCTCCGGCTGCCGTAGCGGCGGCTTATCAGGCACAGGCTCCGGCT
CAGGCTCAGCAGTACCAGGCTCCGGCCCAGGCTCAGCAGTACCAAGCTCCAGCTCAGGCTCAGTATCAGGCTAAA
GCTCAGCAGGCTCCGGCCCAGGCTCAGGCTCAGCAGTACCAGGCTCCGGCCCAGGCTCAGCAGTACCAGGCTCCG
GCCCAGGCTCAGCAGTACCAGGCTCCGGCTCCGGCTCCGGCTCAGGCCCAGGCTCAGTATCAAGCTCCTGCTCAG
GCCAAGGCTCAGTACCAGGCTCCTGCTCAGGCAAAGGCTCAGTACCAAGCAGCGTCTCAGGCCAAGGCTCAATAC
CAGGCTCAGGCTGCCGCCCAGCCTCAGGCACAGGATAAGGCTCAGAGTCAAGACAAGGCTGCCATCCAGGCTCAG
GACCAGGGTCAAACTCAAGACCAGGCTGCCTCTCAGGGTCCGGCTCAAGACAAGGCTGCCTCCCAGGGCCAGGCC
AAAGCTCAGGCTCAGGCTTCCTCCCAGGGACAGGGTCAAACTCGAGACAAGGCTGCCCCCCAGGCTCAGGCTCAG
GCTCAAGACAAGGCTGCCTCCCAAGCTCAGGGTCAGACTCAAGACAAGGCTGCGACCAAAGGTCAAGTTTCCTAC
CTAGGCCAGGGTCAAGCTCAAGGTCAATCTGCCTCTCAGGGTCAGACTCAGGGGCAGGCTCAAGACAAGGCAGCC
CCGCAGGCTCAGGGACAAGCTCAGGATCAGGCTTCCGCCCAGGCTCCGGCCCAGGGTCAGACTCAAGACAAGGCC
GCCCCCCAGAGCCAGGGACAGGGTCAGACTTCAGACAAGGCTTCCTCCCCGGCTCCGGCTCAGGGTCAGATCCAG
GATCAGGCTTCCGCTCAGCCCTCGGCCCAGGGTCAGACCCAGGATCAGGCTTCCGCCCAGCCCTCGGCCCAGGGT
CAGACCCAAGATCAAGCTTCTGCTCAGCCCTCGGCCCAGGGTCAGGCTCAGGATCAGCCCTCCATCCAGGCTCCG
GCTCCGGCTCCGGCTCAGAACCAGGCTTCCGCCCCAGCCAACTCTGGACCGGCTCCGGCTCCGGCAGGAGGAGAC
TCGGGTGCTGCTCCAGCATCGGCTGGAAGCGGGGCCAGCTCTGGCGACAGCGCAGCCGGTGGCAGCGGCCCGTCG
GTCGTTCCCACTTCCTCGGCCTCTCAGTTTGTTCTGGGGAAACAGATGGTCGCCATCTTTGGCGCCCTTGCTTCG
GTCATTCTGGTGCTC
Transcript >Ophio5|5602
ATGGACACTTCCATCATCACGGCCACTTCCGTCATCGCCACCATCGCCACCATCATGGCCATCACGGCCATTTCG
GCCATCATCGTCACGGACACCATCATCGCCACCACCACGGCCATCGTGGCCATGGACACTACCGTCATGGCCATC
GCTACTACGAGGAAGGCGGCAAGTGCAGGTCCGGACGACAAGGCTGAGGGAGGCGACAAGGCCAAGGTCGCCGCC
GAGTCCTCGCCGGCTGCTACGGCAACGCCGGCCGCGGCGGTTGTCGCTTACCAGCAGCCCGCCGCGGCTCCGGCT
GCGGCTCCGGCTGTTGCTGTTGCCGCTGCGTCTCCGGCTGCCGTAGCGGCGGCTTATCAGGCACAGGCTCCGGCT
CAGGCTCAGCAGTACCAGGCTCCGGCCCAGGCTCAGCAGTACCAAGCTCCAGCTCAGGCTCAGTATCAGGCTAAA
GCTCAGCAGGCTCCGGCCCAGGCTCAGGCTCAGCAGTACCAGGCTCCGGCCCAGGCTCAGCAGTACCAGGCTCCG
GCCCAGGCTCAGCAGTACCAGGCTCCGGCTCCGGCTCCGGCTCAGGCCCAGGCTCAGTATCAAGCTCCTGCTCAG
GCCAAGGCTCAGTACCAGGCTCCTGCTCAGGCAAAGGCTCAGTACCAAGCAGCGTCTCAGGCCAAGGCTCAATAC
CAGGCTCAGGCTGCCGCCCAGCCTCAGGCACAGGATAAGGCTCAGAGTCAAGACAAGGCTGCCATCCAGGCTCAG
GACCAGGGTCAAACTCAAGACCAGGCTGCCTCTCAGGGTCCGGCTCAAGACAAGGCTGCCTCCCAGGGCCAGGCC
AAAGCTCAGGCTCAGGCTTCCTCCCAGGGACAGGGTCAAACTCGAGACAAGGCTGCCCCCCAGGCTCAGGCTCAG
GCTCAAGACAAGGCTGCCTCCCAAGCTCAGGGTCAGACTCAAGACAAGGCTGCGACCAAAGGTCAAGTTTCCTAC
CTAGGCCAGGGTCAAGCTCAAGGTCAATCTGCCTCTCAGGGTCAGACTCAGGGGCAGGCTCAAGACAAGGCAGCC
CCGCAGGCTCAGGGACAAGCTCAGGATCAGGCTTCCGCCCAGGCTCCGGCCCAGGGTCAGACTCAAGACAAGGCC
GCCCCCCAGAGCCAGGGACAGGGTCAGACTTCAGACAAGGCTTCCTCCCCGGCTCCGGCTCAGGGTCAGATCCAG
GATCAGGCTTCCGCTCAGCCCTCGGCCCAGGGTCAGACCCAGGATCAGGCTTCCGCCCAGCCCTCGGCCCAGGGT
CAGACCCAAGATCAAGCTTCTGCTCAGCCCTCGGCCCAGGGTCAGGCTCAGGATCAGCCCTCCATCCAGGCTCCG
GCTCCGGCTCCGGCTCAGAACCAGGCTTCCGCCCCAGCCAACTCTGGACCGGCTCCGGCTCCGGCAGGAGGAGAC
TCGGGTGCTGCTCCAGCATCGGCTGGAAGCGGGGCCAGCTCTGGCGACAGCGCAGCCGGTGGCAGCGGCCCGTCG
GTCGTTCCCACTTCCTCGGCCTCTCAGTTTGTTCTGGGGAAACAGATGGTCGCCATCTTTGGCGCCCTTGCTTCG
GTCATTCTGGTGCTCTAA
Gene >Ophio5|5602
ATGGACACTTCCATCATCACGGCCACTTCCGTCATCGCCACCATCGCCACCATCATGGCCATCACGGCCATTTCG
GCCATCATCGTCACGGACACCATCATCGCCACCACCACGGCCATCGTGGCCATGGACACTACCGTCATGGCCATC
GCTACTACGAGGAAGGCGGCAAGTGCAGGTCCGGTTACGACAAGTGCGAGAAGAACAAGTGCTGCGAAAAGAGTG
ACAAGGACGACAAGGCTGAGGGAGGCGACAAGGCCAAGGTCGCCGCCGAGTCCTCGCCGGCTGCTACGGCAACGC
CGGCCGCGGCGGTTGTCGCTTACCAGCAGCCCGCCGCGGCTCCGGCTGCGGCTCCGGCTGTTGCTGTTGCCGCTG
CGTCTCCGGCTGCCGTAGCGGCGGCTTATCAGGCACAGGCTCCGGCTCAGGCTCAGCAGTACCAGGCTCCGGCCC
AGGCTCAGCAGTACCAAGCTCCAGCTCAGGCTCAGTATCAGGCTAAAGCTCAGCAGGCTCCGGCCCAGGCTCAGG
CTCAGCAGTACCAGGCTCCGGCCCAGGCTCAGCAGTACCAGGCTCCGGCCCAGGCTCAGCAGTACCAGGCTCCGG
CTCCGGCTCCGGCTCAGGCCCAGGCTCAGTATCAAGCTCCTGCTCAGGCCAAGGCTCAGTACCAGGCTCCTGCTC
AGGCAAAGGCTCAGTACCAAGCAGCGTCTCAGGCCAAGGCTCAATACCAGGCTCAGGCTGCCGCCCAGCCTCAGG
CACAGGATAAGGCTCAGAGTCAAGACAAGGCTGCCATCCAGGCTCAGGACCAGGGTCAAACTCAAGACCAGGCTG
CCTCTCAGGGTCCGGCTCAAGACAAGGCTGCCTCCCAGGGCCAGGCCAAAGCTCAGGCTCAGGCTTCCTCCCAGG
GACAGGGTCAAACTCGAGACAAGGCTGCCCCCCAGGCTCAGGCTCAGGCTCAAGACAAGGCTGCCTCCCAAGCTC
AGGGTCAGACTCAAGACAAGGCTGCGACCAAAGGTCAAGTTTCCTACCTAGGCCAGGGTCAAGCTCAAGGTCAAT
CTGCCTCTCAGGGTCAGACTCAGGGGCAGGCTCAAGACAAGGCAGCCCCGCAGGCTCAGGGACAAGCTCAGGATC
AGGCTTCCGCCCAGGCTCCGGCCCAGGGTCAGACTCAAGACAAGGCCGCCCCCCAGAGCCAGGGACAGGGTCAGA
CTTCAGACAAGGCTTCCTCCCCGGCTCCGGCTCAGGGTCAGATCCAGGATCAGGCTTCCGCTCAGCCCTCGGCCC
AGGGTCAGACCCAGGATCAGGCTTCCGCCCAGCCCTCGGCCCAGGGTCAGACCCAAGATCAAGCTTCTGCTCAGC
CCTCGGCCCAGGGTCAGGCTCAGGATCAGCCCTCCATCCAGGCTCCGGCTCCGGCTCCGGCTCAGAACCAGGCTT
CCGCCCCAGCCAACTCTGGACCGGCTCCGGCTCCGGCAGGAGGAGACTCGGGTGCTGCTCCAGCATCGGCTGGAA
GCGGGGCCAGCTCTGGCGACAGCGCAGCCGGTGGCAGCGGCCCGTCGGTCGTTCCCACTTCCTCGGCCTCTCAGT
TTGTTCTGGGGAAACAGATGGTCGCCATCTTTGGCGCCCTTGCTTCGGTCATTCTGGTGCTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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