Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|5587
Gene name
Location	scaffold_460:3594..4958
Strand	+
Gene length (bp)	1364
Transcript length (bp)	1194
Coding sequence length (bp)	1191
Protein length (aa)	397

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF16899	Cyclin_C_2	Cyclin C-terminal domain	4.7E-30	156	262

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P37366\|CCL1_YEAST	Cyclin CCL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCL1 PE=1 SV=1	3	266	1.0E-33
sp\|P36613\|CGM2_SCHPO	Cyclin mcs2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcs2 PE=1 SV=1	6	213	4.0E-31
sp\|P51946\|CCNH_HUMAN	Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1	8	329	3.0E-25
sp\|Q4R7U4\|CCNH_MACFA	Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1	8	214	3.0E-25
sp\|Q3ZBL9\|CCNH_BOVIN	Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1	8	214	3.0E-25

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P37366\|CCL1_YEAST	Cyclin CCL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCL1 PE=1 SV=1	3	266	1.0E-33
sp\|P36613\|CGM2_SCHPO	Cyclin mcs2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcs2 PE=1 SV=1	6	213	4.0E-31
sp\|P51946\|CCNH_HUMAN	Cyclin-H OS=Homo sapiens GN=CCNH PE=1 SV=1	8	329	3.0E-25
sp\|Q4R7U4\|CCNH_MACFA	Cyclin-H OS=Macaca fascicularis GN=CCNH PE=2 SV=1	8	214	3.0E-25
sp\|Q3ZBL9\|CCNH_BOVIN	Cyclin-H OS=Bos taurus GN=CCNH PE=2 SV=1	8	214	3.0E-25
sp\|Q61458\|CCNH_MOUSE	Cyclin-H OS=Mus musculus GN=Ccnh PE=1 SV=2	8	329	4.0E-25
sp\|Q9R1A0\|CCNH_RAT	Cyclin-H OS=Rattus norvegicus GN=Ccnh PE=1 SV=2	8	329	6.0E-25
sp\|Q55F19\|CCNH_DICDI	Putative cyclin-H OS=Dictyostelium discoideum GN=cycH PE=3 SV=1	8	213	9.0E-24
sp\|P51947\|CCNH_XENLA	Cyclin-H OS=Xenopus laevis GN=ccnh PE=1 SV=1	8	214	3.0E-17
sp\|Q9GP34\|CCNH_ECHMU	Probable cyclin-H OS=Echinococcus multilocularis GN=CYCH PE=2 SV=1	8	311	9.0E-17
sp\|Q8W5S1\|CCH11_ARATH	Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1	42	292	4.0E-14
sp\|Q10D80\|CCH11_ORYSJ	Cyclin-H1-1 OS=Oryza sativa subsp. japonica GN=CYCH1-1 PE=1 SV=1	8	213	4.0E-13
sp\|Q9C1M4\|SSN8_GIBMO	RNA polymerase II holoenzyme cyclin-like subunit OS=Gibberella moniliformis GN=SSN8 PE=1 SV=1	8	236	2.0E-07
sp\|Q9FJK7\|CCC12_ARATH	Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1	54	161	5.0E-07
sp\|Q86KE7\|CCNC_DICDI	Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1	48	161	6.0E-06
sp\|P55168\|CCNC_CHICK	Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1	36	161	9.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 30	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	31.26	15.18	47.34
CcL	In ants, during behavior modification	42.61	21.61	63.61
CcD	In ants, recently dead	51.28	27.22	75.35

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.224160	no
SC16a	CcD	0.037360	yes
CcL	CcD	0.467745	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|5587 MATEDERYRQSSQFRLWSFSTASLQDLRAKTNRMAKQQVAARTEATLEFLTPDEESRLVKFFTIELIRAAQFCEL PTEIRSTAAIFLRRFYITNSVMTYPPTELLKTCLFFGCKAEGFYIRLAKLAEKFPNTTSEQILAGEFLLCQGIRF AFDVRHPFRALEGAILELRRLRPDEEARIIKAHAHARETLKFSALVTDAYFHFTPSQIMMAALLMVDSGLVDILI PKPKASGDAGSDEASRVSTGVYDKIMTTIESCRAMLEDEPPERMTDYWATGETVKSMKPLRKKLQKCRDPDRADL VALQRARREQAVAKPSKTPGAAVANDGMVFGTSNSRDAKRRKLEANDEPFGPSHFSDFDSIDEDVAHPETLGFTA DLWVVTTPETRPVEGDGTRQMR
Coding	>Ophio5\|5587 ATGGCTACGGAAGATGAGCGCTACCGTCAGTCGAGCCAATTCCGCCTCTGGTCCTTCTCGACAGCCAGCTTGCAA GATCTACGGGCCAAGACGAACAGGATGGCAAAGCAGCAGGTCGCTGCTCGTACCGAAGCAACCCTCGAATTCTTG ACTCCAGACGAAGAGTCGCGCCTCGTCAAATTCTTCACAATCGAGCTCATCCGTGCCGCCCAGTTCTGCGAATTG CCCACCGAGATCCGCTCGACCGCGGCCATTTTCCTACGACGCTTCTACATTACCAACTCCGTCATGACGTATCCG CCGACGGAGCTGCTCAAGACATGCCTGTTCTTTGGTTGTAAGGCAGAGGGCTTCTATATCCGCCTTGCCAAGCTA GCGGAAAAGTTTCCCAACACCACGAGCGAGCAGATTCTGGCCGGTGAATTCCTACTATGCCAGGGCATTCGCTTC GCATTCGATGTCCGCCATCCTTTCCGCGCCTTGGAAGGCGCCATACTGGAGTTGCGCCGCCTTCGGCCGGACGAG GAGGCTCGGATCATCAAAGCGCATGCGCACGCCAGGGAGACGCTCAAGTTCAGCGCTCTGGTGACGGATGCTTAC TTTCACTTCACCCCCAGCCAGATCATGATGGCTGCTCTACTCATGGTAGATTCCGGTTTGGTCGACATTTTGATA CCCAAACCCAAGGCCAGCGGGGACGCCGGCTCAGACGAAGCCTCACGAGTCTCGACGGGCGTATACGACAAGATA ATGACGACTATCGAAAGCTGTCGCGCCATGCTGGAAGATGAGCCTCCGGAGAGGATGACCGATTACTGGGCCACT GGGGAAACTGTGAAATCCATGAAACCGCTTCGTAAAAAGCTGCAAAAATGTCGAGACCCGGACAGGGCCGATCTG GTGGCACTGCAGCGGGCCAGACGCGAACAAGCAGTGGCCAAGCCTTCGAAGACGCCTGGAGCGGCTGTGGCAAAC GACGGGATGGTTTTCGGAACCAGCAACTCTAGAGACGCGAAACGAAGAAAGTTGGAAGCCAACGACGAACCTTTT GGCCCTTCACATTTCTCGGACTTTGACTCGATTGACGAGGATGTCGCCCACCCAGAAACCTTGGGCTTTACTGCG GATCTTTGGGTAGTGACGACGCCCGAGACACGTCCCGTCGAAGGCGACGGAACTAGACAAATGCGA
Transcript	>Ophio5\|5587 ATGGCTACGGAAGATGAGCGCTACCGTCAGTCGAGCCAATTCCGCCTCTGGTCCTTCTCGACAGCCAGCTTGCAA GATCTACGGGCCAAGACGAACAGGATGGCAAAGCAGCAGGTCGCTGCTCGTACCGAAGCAACCCTCGAATTCTTG ACTCCAGACGAAGAGTCGCGCCTCGTCAAATTCTTCACAATCGAGCTCATCCGTGCCGCCCAGTTCTGCGAATTG CCCACCGAGATCCGCTCGACCGCGGCCATTTTCCTACGACGCTTCTACATTACCAACTCCGTCATGACGTATCCG CCGACGGAGCTGCTCAAGACATGCCTGTTCTTTGGTTGTAAGGCAGAGGGCTTCTATATCCGCCTTGCCAAGCTA GCGGAAAAGTTTCCCAACACCACGAGCGAGCAGATTCTGGCCGGTGAATTCCTACTATGCCAGGGCATTCGCTTC GCATTCGATGTCCGCCATCCTTTCCGCGCCTTGGAAGGCGCCATACTGGAGTTGCGCCGCCTTCGGCCGGACGAG GAGGCTCGGATCATCAAAGCGCATGCGCACGCCAGGGAGACGCTCAAGTTCAGCGCTCTGGTGACGGATGCTTAC TTTCACTTCACCCCCAGCCAGATCATGATGGCTGCTCTACTCATGGTAGATTCCGGTTTGGTCGACATTTTGATA CCCAAACCCAAGGCCAGCGGGGACGCCGGCTCAGACGAAGCCTCACGAGTCTCGACGGGCGTATACGACAAGATA ATGACGACTATCGAAAGCTGTCGCGCCATGCTGGAAGATGAGCCTCCGGAGAGGATGACCGATTACTGGGCCACT GGGGAAACTGTGAAATCCATGAAACCGCTTCGTAAAAAGCTGCAAAAATGTCGAGACCCGGACAGGGCCGATCTG GTGGCACTGCAGCGGGCCAGACGCGAACAAGCAGTGGCCAAGCCTTCGAAGACGCCTGGAGCGGCTGTGGCAAAC GACGGGATGGTTTTCGGAACCAGCAACTCTAGAGACGCGAAACGAAGAAAGTTGGAAGCCAACGACGAACCTTTT GGCCCTTCACATTTCTCGGACTTTGACTCGATTGACGAGGATGTCGCCCACCCAGAAACCTTGGGCTTTACTGCG GATCTTTGGGTAGTGACGACGCCCGAGACACGTCCCGTCGAAGGCGACGGAACTAGACAAATGCGATGA
Gene	>Ophio5\|5587 ATGGCTACGGAAGATGAGCGCTACCGTCAGTCGAGCCAATTCCGCCTCTGGTCCTTCTCGACAGCCAGCTTGCAA GATCTACGGGCCAAGACGAACAGGATGGCAAAGCAGCAGGTCGCTGCTCGTACCGAAGCAACCCTCGAATTCTTG ACTCCAGACGAAGAGTCGCGCCTCGTCAAATTCTTCACAATCGAGCTCATCCGTGCCGCCCAGTTCTGCGAATTG CCCACCGAGATCCGCTCGACCGCGGCCATTTTCCTACGACGCTTCTACATTACCAACTCCGTCATGACGTATCCG CCGACGGAGCTGCTCAAGACATGCCTGTTCTTTGGTTGTAAGGCAGAGGGCTTCTATATCCGCCTTGCCAAGCTA GCGGAAAAGTTTCCCAACACCACGAGCGAGCAGATTCTGGCCGGTGAATTCCTACTATGCCAGGGCATTCGCTTC GCATTCGATGTCCGCCATCCTTTCCGCGCCTTGGAAGGCGCCATACTGGAGTTGCGCCGCCTTCGGCCGGACGAG GAGGCTCGGATCATCAAAGCGCATGCGCACGCCAGGGAGACGCTCAAGTTCAGCGCTCTGGTGACGGATGCTTAC TTTCACTTCACCCCCAGCCAGATCATGATGGCTGCTCTACTCATGGTAGATTCCGGTTTGGTCGACATTTTGATA CCCAAACCCAAGGCCAGCGGGGACGCCGGCTCAGACGAAGCCTCACGAGTCTCGACGGGCGTATACGACAAGATA ATGACGACTATCGAAAGCTGTCGCGCCATGCTGGAAGATGAGCCTCCGGAGAGGATGACCGATTACTGGGCCACT GTGCGCACACCCTGAACCGTAACCCCGTCTTCTACTGACTTGAACAGGGGGAAACTGTGAAATCCATGAAACCGC TTCGTAAAAAGCTGCAAAAATGTCGAGACCCGGACAGGGCCGATCTGGTGGCACTGCAGCGGGCCAGACGCGAAC AAGCAGTGGCCAAGCCTTCGAAGACGCCTGGAGCGGCTGTGGCAAACGACGGGATGGTTTTCGGAACCAGCAACT CTAGAGACGCGAAACGAAGAAAGTTGGAAGCCAACGACGAACCTTTTGGCCCTTCGTTAGTGGGTTGATGGGCCT CGCCTTTACTTCGAGATGGTGATATATTTCGTCACGCGGGAAACACAGACATTTCTCGGACTTTGACTCGATTGA CGAGGATGTCGCCCACCCAGAAACCTTGGGCTTTACTGCGGATCTTTGGGTAGTGACGACGCCCGAGACACGTCC CGTCGAGTGAGTGGTTGCGCTATCCCGCTCTCTCCCTATCTAACAACTCGGTTGGCCGCAGAGGCGACGGAACTA GACAAATGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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