Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5581
Gene name
Locationscaffold_46:49577..50095
Strand-
Gene length (bp)518
Transcript length (bp)468
Coding sequence length (bp)465
Protein length (aa) 155

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01284 MARVEL Membrane-associating domain 1.2E-15 8 132

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 45 67 22
3 82 104 22
4 117 139 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5581
MGRTSVLSLRIFQGLLATVNLSLSAYVVNWYLVTTIRGSPPSVGFLVFAALFSILSILYLELVPRLFPRAGRPSV
TLGVEATNAIFYFAAFIAHAVYLGSLAMCHGAVCTASRVDSVVAASAFCAWVASTILTARDMFVAGLGRPGDKPA
QMREP
Coding >Ophio5|5581
ATGGGTCGAACCAGCGTCCTCTCTTTACGCATCTTCCAAGGCCTCCTGGCTACCGTCAACCTCAGCCTCTCTGCC
TACGTTGTCAATTGGTATCTGGTGACGACGATACGCGGCTCGCCCCCTTCGGTCGGCTTCCTCGTCTTCGCCGCA
CTCTTCTCCATCCTGTCGATTCTCTACCTCGAGCTCGTGCCGCGGCTGTTCCCACGCGCCGGTCGACCGAGCGTA
ACGCTGGGCGTCGAGGCCACCAACGCCATCTTCTACTTTGCCGCCTTCATCGCCCATGCCGTCTACCTCGGCAGC
CTGGCCATGTGCCACGGCGCCGTCTGCACTGCCAGCCGCGTCGACTCTGTCGTCGCTGCCTCTGCCTTTTGCGCC
TGGGTGGCGTCGACGATCCTGACGGCCAGGGACATGTTCGTTGCCGGCCTCGGGAGGCCTGGCGACAAGCCGGCG
CAGATGCGAGAGCCG
Transcript >Ophio5|5581
ATGGGTCGAACCAGCGTCCTCTCTTTACGCATCTTCCAAGGCCTCCTGGCTACCGTCAACCTCAGCCTCTCTGCC
TACGTTGTCAATTGGTATCTGGTGACGACGATACGCGGCTCGCCCCCTTCGGTCGGCTTCCTCGTCTTCGCCGCA
CTCTTCTCCATCCTGTCGATTCTCTACCTCGAGCTCGTGCCGCGGCTGTTCCCACGCGCCGGTCGACCGAGCGTA
ACGCTGGGCGTCGAGGCCACCAACGCCATCTTCTACTTTGCCGCCTTCATCGCCCATGCCGTCTACCTCGGCAGC
CTGGCCATGTGCCACGGCGCCGTCTGCACTGCCAGCCGCGTCGACTCTGTCGTCGCTGCCTCTGCCTTTTGCGCC
TGGGTGGCGTCGACGATCCTGACGGCCAGGGACATGTTCGTTGCCGGCCTCGGGAGGCCTGGCGACAAGCCGGCG
CAGATGCGAGAGCCGTGA
Gene >Ophio5|5581
ATGGGTCGAACCAGCGTCCTCTCTTTACGCATCTTCCAAGGCCTCCTGGCTACCGTCAACCTCAGCCTCTCTGCC
TACGGTTCGTCTGTGCTTGCTTGTGCTATTTTGCAAGAGCTGACTCGCCTGCAGTTGTCAATTGGTATCTGGTGA
CGACGATACGCGGCTCGCCCCCTTCGGTCGGCTTCCTCGTCTTCGCCGCACTCTTCTCCATCCTGTCGATTCTCT
ACCTCGAGCTCGTGCCGCGGCTGTTCCCACGCGCCGGTCGACCGAGCGTAACGCTGGGCGTCGAGGCCACCAACG
CCATCTTCTACTTTGCCGCCTTCATCGCCCATGCCGTCTACCTCGGCAGCCTGGCCATGTGCCACGGCGCCGTCT
GCACTGCCAGCCGCGTCGACTCTGTCGTCGCTGCCTCTGCCTTTTGCGCCTGGGTGGCGTCGACGATCCTGACGG
CCAGGGACATGTTCGTTGCCGGCCTCGGGAGGCCTGGCGACAAGCCGGCGCAGATGCGAGAGCCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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