Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|5578
Gene name
Location	scaffold_46:41868..42796
Strand	-
Gene length (bp)	928
Transcript length (bp)	774
Coding sequence length (bp)	771
Protein length (aa)	257

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF09430	EMC7_beta-sandw	ER membrane protein complex subunit 7, beta-sandwich domain	5.3E-23	46	171

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8VY97\|Y4213_ARATH	ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1	73	206	1.0E-10
sp\|Q9EP72\|EMC7_MOUSE	ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1	67	198	7.0E-08
sp\|Q9NPA0\|EMC7_HUMAN	ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1	67	198	9.0E-08
sp\|A5PJA8\|EMC7_BOVIN	ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1	67	198	9.0E-08
sp\|Q0IHY5\|EMC7_XENTR	ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1	67	198	1.0E-07

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8VY97\|Y4213_ARATH	ER membrane protein complex subunit 7 homolog OS=Arabidopsis thaliana GN=At4g32130 PE=2 SV=1	73	206	1.0E-10
sp\|Q9EP72\|EMC7_MOUSE	ER membrane protein complex subunit 7 OS=Mus musculus GN=Emc7 PE=1 SV=1	67	198	7.0E-08
sp\|Q9NPA0\|EMC7_HUMAN	ER membrane protein complex subunit 7 OS=Homo sapiens GN=EMC7 PE=1 SV=1	67	198	9.0E-08
sp\|A5PJA8\|EMC7_BOVIN	ER membrane protein complex subunit 7 OS=Bos taurus GN=EMC7 PE=2 SV=1	67	198	9.0E-08
sp\|Q0IHY5\|EMC7_XENTR	ER membrane protein complex subunit 7 OS=Xenopus tropicalis GN=emc7 PE=2 SV=1	67	198	1.0E-07
sp\|Q4R5V2\|EMC7_MACFA	ER membrane protein complex subunit 7 OS=Macaca fascicularis GN=EMC7 PE=2 SV=1	67	198	4.0E-07

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 32	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	20	42	22
2	158	180	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|5578 MPPSIQATMPPSIQHVLHLLLTLTSLPLVLGGTSLTLYLPASTSPHRLATRTHATLSSLGLHRAAPLSVTNAFVF RNVTPGSYLVDVHCPSLAFRPLRVDVGRGDEGQDGAVAAWETFRGNDWANKGEALTLLRGSDGLGFEMRPLGAKV YFMERQGFSVLGILKSPMILMGLVGMLMVFGMPYLMENMDPEMKAEFEAQQRKGGPVASIMGGAGPQGGNPLGDF DMAAFLAGSKKKDTPLPLADADGPSRQQGVRR
Coding	>Ophio5\|5578 ATGCCGCCCTCGATCCAAGCCACGATGCCGCCCTCGATCCAACACGTGCTGCACCTGCTACTCACCCTCACATCC CTCCCTCTCGTTCTGGGCGGCACCTCTTTAACGCTATACCTCCCCGCGAGCACGTCACCGCACAGGCTCGCGACG CGAACGCACGCCACGCTCTCGTCGCTGGGCCTTCACCGCGCGGCGCCGCTGTCGGTGACCAACGCCTTCGTCTTT CGAAACGTCACGCCCGGCTCTTACCTCGTCGATGTTCACTGTCCCTCGCTGGCTTTTCGTCCGTTGCGCGTCGAC GTCGGTCGAGGGGATGAGGGTCAGGATGGCGCCGTGGCCGCGTGGGAGACGTTTCGTGGCAATGATTGGGCGAAT AAGGGTGAGGCTTTGACCTTACTCAGGGGTTCTGATGGCTTGGGCTTCGAGATGAGGCCGCTGGGGGCCAAGGTT TACTTTATGGAGCGTCAGGGCTTCTCCGTCTTAGGCATCCTCAAAAGCCCCATGATACTCATGGGCCTCGTCGGC ATGCTCATGGTTTTCGGCATGCCCTACCTCATGGAGAACATGGACCCCGAGATGAAAGCCGAGTTCGAAGCCCAG CAGCGCAAAGGCGGTCCCGTAGCCAGCATCATGGGCGGCGCCGGGCCGCAGGGAGGCAACCCCCTCGGCGATTTC GACATGGCTGCTTTCCTCGCCGGCTCCAAGAAGAAGGATACGCCGCTGCCGCTTGCTGATGCGGATGGCCCTTCT AGGCAGCAGGGTGTGCGAAGA
Transcript	>Ophio5\|5578 ATGCCGCCCTCGATCCAAGCCACGATGCCGCCCTCGATCCAACACGTGCTGCACCTGCTACTCACCCTCACATCC CTCCCTCTCGTTCTGGGCGGCACCTCTTTAACGCTATACCTCCCCGCGAGCACGTCACCGCACAGGCTCGCGACG CGAACGCACGCCACGCTCTCGTCGCTGGGCCTTCACCGCGCGGCGCCGCTGTCGGTGACCAACGCCTTCGTCTTT CGAAACGTCACGCCCGGCTCTTACCTCGTCGATGTTCACTGTCCCTCGCTGGCTTTTCGTCCGTTGCGCGTCGAC GTCGGTCGAGGGGATGAGGGTCAGGATGGCGCCGTGGCCGCGTGGGAGACGTTTCGTGGCAATGATTGGGCGAAT AAGGGTGAGGCTTTGACCTTACTCAGGGGTTCTGATGGCTTGGGCTTCGAGATGAGGCCGCTGGGGGCCAAGGTT TACTTTATGGAGCGTCAGGGCTTCTCCGTCTTAGGCATCCTCAAAAGCCCCATGATACTCATGGGCCTCGTCGGC ATGCTCATGGTTTTCGGCATGCCCTACCTCATGGAGAACATGGACCCCGAGATGAAAGCCGAGTTCGAAGCCCAG CAGCGCAAAGGCGGTCCCGTAGCCAGCATCATGGGCGGCGCCGGGCCGCAGGGAGGCAACCCCCTCGGCGATTTC GACATGGCTGCTTTCCTCGCCGGCTCCAAGAAGAAGGATACGCCGCTGCCGCTTGCTGATGCGGATGGCCCTTCT AGGCAGCAGGGTGTGCGAAGATAG
Gene	>Ophio5\|5578 ATGCCGCCCTCGATCCAAGCCACGATGCCGCCCTCGATCCAACACGTGCTGCACCTGCTACTCACCCTCACATCC CTCCCTCTCGTTCTGGGCGGCACCTCTTTAACGCTATACCTCCCCGCGAGCACGTCACCGCACAGGCTCGCGACG CGAACGCACGCCACGCTCTCGTCGCTGGGCCTTCACCGCGCGGCGCCGCTGTCGGTGACCAACGCCTTCGTCTTT CGAAACGTCACGCCCGGCTCTTACCTCGTCGATGTTCACTGTCCCTCGCTGGCTTTTCGTCCGTTGCGCGTCGAC GTCGGTCGAGGGGATGAGGGTCAGGATGGCGCCGTGGCCGCGTGGGAGACGTTTCGTGGCAATGATTGGGCGAAT AAGGGTGAGGCTTTGACCTTACTCAGGGGTTCTGATGGCTTGGGCTTCGAGATGAGGCCGCTGGGGGCCAAGGTT TACTTTATGGAGCGTCAGGGCTGTGAGCTTTCCCGCCTCCCCCCTCTTTCTTCCCTCCTTGGCGTGTTTTCCAAG CTGACCTTGGGCTTGTCTCCATCAGTCTCCGTCTTAGGCATCCTCAAAAGCCCCATGATACTCATGGGCCTCGTC GGCATGCTCATGGTTTTCGGCATGCCCTACCTCATGGAGAACAGTACGATGGCTCCCCTCCTTCATCTTCCCGGC CATCCATCCTCTCAAGATCGCCGACTAACACCCCCTCCAACCAGTGGACCCCGAGATGAAAGCCGAGTTCGAAGC CCAGCAGCGCAAAGGCGGTCCCGTAGCCAGCATCATGGGCGGCGCCGGGCCGCAGGGAGGCAACCCCCTCGGCGA TTTCGACATGGCTGCTTTCCTCGCCGGCTCCAAGAAGAAGGATACGCCGCTGCCGCTTGCTGATGCGGATGGCCC TTCTAGGCAGCAGGGTGTGCGAAGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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