Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|5559
Gene name
Location	scaffold_46:69..2708
Strand	-
Gene length (bp)	2639
Transcript length (bp)	1485
Coding sequence length (bp)	1482
Protein length (aa)	494

PFAM Domains

(None)

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13695\|YEN1_SCHPO	Uncharacterized serine-rich protein C11G7.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11G7.01 PE=4 SV=1	265	363	3.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	265	287	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	435.20	186.61	683.80
CcL	In ants, during behavior modification	286.55	106.54	466.56
CcD	In ants, recently dead	253.91	120.71	387.11

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.153675	no
SC16a	CcD	0.037242	yes
CcL	CcD	0.709391	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|5559 MVTSAKILWLQQSLRQIRNDFHIFLVHRPSLSTTVSHRLSQPSISIPHPSFLFAPRPSADERYAVRSRFFLLVPA VSFDVCLTGQEAFSSCLVEHVGPDEPGADDIGGREPLDRGDGRPADDQQPLPASLPSTSAAPPPASSSPSSSSSS TEQRPASVPSSSSSPPQRAVSTPSSVPPQSSAPPAAAPSSSSSSQQPDVSSAVVTVTPSNVATSVQVVTSTTTRA PVGGPSTTSSAASSSTSSAAAELDSSNSASGGGLNQASKVAIGVVVPIAAIAFLAIVGLFWWKKRRARQEAEEER RKEVEDYSYNPNADPTMPAVGHSVEHAYEMKDEGGYRGWGSTATTTGSRGRKASTTMSGGAAGTYSDPASPIRAN LSEARSGEPLVDGSSTHEGEILGAMGPSAANNRGGDVRRGPSNASSSYSAAARSDGSDGAMYGNGAAYYEQYGQN PYSEQRPQEAGSQAVIRDNPARRNTRIENSAHYPQQSAGIAQNF
Coding	>Ophio5\|5559 ATGGTGACCTCGGCAAAGATTCTGTGGCTTCAGCAGAGCCTCCGGCAAATACGCAACGATTTTCATATTTTTCTC GTCCACCGCCCGTCACTCTCGACGACTGTTTCTCATAGACTCAGCCAGCCATCCATTTCCATTCCTCACCCTTCA TTCCTCTTCGCGCCCCGCCCGTCGGCGGACGAGCGATACGCCGTTCGGTCACGTTTCTTTCTTCTTGTTCCGGCC GTCTCGTTCGACGTCTGCTTGACAGGACAAGAGGCCTTCTCGTCTTGCCTCGTTGAACATGTCGGGCCGGACGAG CCAGGCGCCGACGACATCGGCGGCCGAGAGCCCCTCGACCGCGGCGACGGCCGCCCAGCCGACGACCAGCAGCCG CTGCCCGCCAGTCTCCCCAGCACGTCGGCCGCTCCTCCACCCGCCAGCTCCTCGCCGTCGTCCAGCTCCTCGTCC ACGGAGCAGCGTCCGGCTTCGGTGCCATCGTCTAGCTCCTCGCCGCCCCAACGTGCCGTGTCGACGCCGAGCTCA GTGCCGCCACAGTCTTCAGCACCTCCCGCCGCCGCCCCTTCCTCCTCGTCCTCCTCGCAGCAGCCCGACGTCTCT TCGGCCGTCGTCACCGTCACTCCGAGCAATGTGGCCACTAGCGTCCAGGTGGTGACATCGACGACGACCCGGGCG CCCGTAGGAGGCCCGTCGACGACATCGTCGGCCGCTTCATCGTCGACGTCGTCGGCCGCCGCCGAACTCGACTCG TCCAACTCGGCCTCTGGTGGCGGCCTGAACCAGGCGTCCAAGGTGGCCATCGGTGTTGTGGTGCCCATCGCCGCC ATCGCCTTCCTGGCCATCGTCGGTCTCTTTTGGTGGAAGAAGCGGAGGGCGCGTCAGGAAGCCGAAGAGGAGCGC CGGAAGGAGGTGGAGGACTACTCATACAACCCCAACGCCGACCCCACGATGCCTGCTGTCGGCCACTCGGTCGAG CACGCGTACGAGATGAAAGACGAGGGCGGCTACCGCGGCTGGGGCTCCACCGCCACCACGACGGGCTCCAGAGGA CGCAAGGCCTCGACGACAATGTCGGGAGGCGCCGCCGGCACCTACTCGGACCCGGCGTCGCCCATCCGCGCCAAC CTATCCGAGGCGCGGTCCGGCGAGCCGCTCGTGGACGGCTCGTCGACGCACGAGGGCGAGATCCTCGGCGCCATG GGGCCGTCGGCGGCCAACAACCGCGGTGGCGACGTGCGTCGAGGGCCGTCCAACGCCTCGTCTTCCTACAGCGCG GCCGCCCGGTCTGATGGGTCCGACGGCGCCATGTACGGCAACGGCGCGGCCTATTACGAACAGTACGGCCAGAAC CCGTACAGCGAGCAGAGGCCGCAGGAGGCGGGCAGCCAAGCCGTCATACGCGACAATCCGGCGAGACGCAATACC CGGATCGAGAACTCGGCGCATTATCCGCAGCAGAGTGCGGGCATTGCTCAAAACTTT
Transcript	>Ophio5\|5559 ATGGTGACCTCGGCAAAGATTCTGTGGCTTCAGCAGAGCCTCCGGCAAATACGCAACGATTTTCATATTTTTCTC GTCCACCGCCCGTCACTCTCGACGACTGTTTCTCATAGACTCAGCCAGCCATCCATTTCCATTCCTCACCCTTCA TTCCTCTTCGCGCCCCGCCCGTCGGCGGACGAGCGATACGCCGTTCGGTCACGTTTCTTTCTTCTTGTTCCGGCC GTCTCGTTCGACGTCTGCTTGACAGGACAAGAGGCCTTCTCGTCTTGCCTCGTTGAACATGTCGGGCCGGACGAG CCAGGCGCCGACGACATCGGCGGCCGAGAGCCCCTCGACCGCGGCGACGGCCGCCCAGCCGACGACCAGCAGCCG CTGCCCGCCAGTCTCCCCAGCACGTCGGCCGCTCCTCCACCCGCCAGCTCCTCGCCGTCGTCCAGCTCCTCGTCC ACGGAGCAGCGTCCGGCTTCGGTGCCATCGTCTAGCTCCTCGCCGCCCCAACGTGCCGTGTCGACGCCGAGCTCA GTGCCGCCACAGTCTTCAGCACCTCCCGCCGCCGCCCCTTCCTCCTCGTCCTCCTCGCAGCAGCCCGACGTCTCT TCGGCCGTCGTCACCGTCACTCCGAGCAATGTGGCCACTAGCGTCCAGGTGGTGACATCGACGACGACCCGGGCG CCCGTAGGAGGCCCGTCGACGACATCGTCGGCCGCTTCATCGTCGACGTCGTCGGCCGCCGCCGAACTCGACTCG TCCAACTCGGCCTCTGGTGGCGGCCTGAACCAGGCGTCCAAGGTGGCCATCGGTGTTGTGGTGCCCATCGCCGCC ATCGCCTTCCTGGCCATCGTCGGTCTCTTTTGGTGGAAGAAGCGGAGGGCGCGTCAGGAAGCCGAAGAGGAGCGC CGGAAGGAGGTGGAGGACTACTCATACAACCCCAACGCCGACCCCACGATGCCTGCTGTCGGCCACTCGGTCGAG CACGCGTACGAGATGAAAGACGAGGGCGGCTACCGCGGCTGGGGCTCCACCGCCACCACGACGGGCTCCAGAGGA CGCAAGGCCTCGACGACAATGTCGGGAGGCGCCGCCGGCACCTACTCGGACCCGGCGTCGCCCATCCGCGCCAAC CTATCCGAGGCGCGGTCCGGCGAGCCGCTCGTGGACGGCTCGTCGACGCACGAGGGCGAGATCCTCGGCGCCATG GGGCCGTCGGCGGCCAACAACCGCGGTGGCGACGTGCGTCGAGGGCCGTCCAACGCCTCGTCTTCCTACAGCGCG GCCGCCCGGTCTGATGGGTCCGACGGCGCCATGTACGGCAACGGCGCGGCCTATTACGAACAGTACGGCCAGAAC CCGTACAGCGAGCAGAGGCCGCAGGAGGCGGGCAGCCAAGCCGTCATACGCGACAATCCGGCGAGACGCAATACC CGGATCGAGAACTCGGCGCATTATCCGCAGCAGAGTGCGGGCATTGCTCAAAACTTTTGA
Gene	>Ophio5\|5559 ATGGTGACCTCGGCAAGTATGTAGGTACCGGCATCAGCTTCGGGGTTCAGGGCCTCTGCTAACGGCAGCAAGTAC CTCATGGCGCGCCGATACCTGCGTGGTGGCCCAGAGCTTTGCGGAGAAGAGGCCTCCATGTGACCGGTTCCGATA CCTCGTACGAGAGGGGAACGCTACCGCCCTACCGCCGTCCCCGGACGGGCTGGAGGTTGCACGCTACTTGCTGCC TACCTAGGCAGGACCTGACCGAGTTAGGCAGGCCGGACCTTGGCGCAGATACGAATATCCGTTCTTTCGCGCCCT CTCTCGTACCAGTCTGCAGCGTCGAGATCGAACCGTCACCCCGTGTGTGTGTGTGTGTGTGTGTTTTTTTCCTGC TGCACTTTCTTTCCTTCTTCTCTCTTCTCTTCCATCTTCTCCGTTCATACCGGGAGGGGGAGGGGATTCTGTTTC TCTTTTTTTCCCCCCCTTTTCCTCTTCTCTTATCGGCCTCTTGCTCGGTCTGCGACGGCTTGTCCGTGGCGCTAT CGCCAGCCTCGACTGCTGCGTCTCAGACTGAACATTTCGTCTTTCCTTTGCCTGCCTCCCTGCCCCCTCTCGAAG GAGGACAAAAAAAAAAAAAAGAGATTCTGTGGCTTCAGCAGAGCCTCCGGCAAATACGCAACGATTTTCATATTT TTCTCGTGTATGATTTTCTTGCCCGACAATTTTTTTTTTCATCATTATCCACCCTCACGGCATCTCTTTTCCCTG CCCCATCTTTTCCTTTGTTTATTTTCGCCTCGTCCTCTTCCTCTCTCTTGGCAGATCCATCCTCTGTCGTTTTCT CCCCCCCTCTCTCTTCCACTCTTTCGCTGACCCTTACCAGCCACCGCCCGTCACTCTCGACGACTGTTTCTCATA GACTCAGCCAGCCATCCATTTCCATTCCTCACCCTTCATTCCTCTTCGCGCCCCGCCCGTCGGCGGACGAGCGAT ACGCCGTTCGGTCACGTTTCTTTCTTCTTGTTCCGGCCGTCTCGTTCGACGTCTGCTTGACAGGTATGTATATGA CATGGGACTCTCTTCCTCTCGCTCGCCGCAAGCGTGGCATTGAGCATAGCTCTTGGCCACTCCCCAAAGTCACAG TCCTGGCGTCTCGAAGTATCGTCGACAGACTGTCTGCTGCTCGTCCTCCTTCATGGCAGCGACACGGCGCTGGCG GACCTTCCGCCGGCCCAGCGCCCATGGCCGTCCCGCGTCCGGACCCGGACCCGGACCCGGACCCGGGCCTCGCAC ATGATATGAGCGGCGCTAACAGGAGTGAGCCATTCCAGGACAAGAGGCCTTCTCGTCTTGCCTCGTTGAACATGT CGGGCCGGACGAGCCAGGCGCCGACGACATCGGCGGCCGAGAGCCCCTCGACCGCGGCGACGGCCGCCCAGCCGA CGAGTGAAGAGGCTGCTGCCTCGCTTGCAGCCTCTTCCGCTGCTTCCCCTACCGCCTCACCATCGTCGCCATCCA CAAACTCGCCGGCGCAAAGCCAGCAGCCGCTGCCCGCCAGTCTCCCCAGCACGTCGGCCGCTCCTCCACCCGCCA GCTCCTCGCCGTCGTCCAGCTCCTCGTCCACGGAGCAGCGTCCGGCTTCGGTGCCATCGTCTAGCTCCTCGCCGC CCCAACGTGCCGTGTCGACGCCGAGCTCAGTGCCGCCACAGTCTTCAGCACCTCCCGCCGCCGCCCCTTCCTCCT CGTCCTCCTCGCAGCAGCCCGACGTCTCTTCGGCCGTCGTCACCGTCACTCCGAGCAATGTGGCCACTAGCGTCC AGGTGGTGACATCGACGACGACCCGGGCGCCCGTAGGAGGCCCGTCGACGACATCGTCGGCCGCTTCATCGTCGA CGTCGTCGGCCGCCGCCGAACTCGACTCGTCCAACTCGGCCTCTGGTGGCGGCCTGAACCAGGCGTCCAAGGTGG CCATCGGTGTTGTGGTGCCCATCGCCGCCATCGCCTTCCTGGCCATCGTCGGTCTCTTTTGGTGGAAGAAGCGGA GGGCGCGTCAGGAAGCCGAAGAGGAGCGCCGGAAGGAGGTGGAGGACTACTCATACAACCCCAACGCCGACCCCA CGATGCCTGCTGTCGGCCACTCGGTCGAGCACGCGTACGAGATGAAAGACGAGGGCGGCTACCGCGGCTGGGGCT CCACCGCCACCACGACGGGCTCCAGAGGACGCAAGGCCTCGACGACAATGTCGGGAGGCGCCGCCGGCACCTACT CGGACCCGGCGTCGCCCATCCGCGCCAACCTATCCGAGGCGCGGTCCGGCGAGCCGCTCGTGGACGGCTCGTCGA CGCACGAGGGCGAGATCCTCGGCGCCATGGGGCCGTCGGCGGCCAACAACCGCGGTGGCGACGTGCGTCGAGGGC CGTCCAACGCCTCGTCTTCCTACAGCGCGGCCGCCCGGTCTGATGGGTCCGACGGCGCCATGTACGGCAACGGCG CGGCCTATTACGAACAGTACGGCCAGAACCCGTACAGCGAGCAGAGGCCGCAGGAGGCGGGCAGCCAAGCCGTCA TACGCGACAATCCGGCGAGACGCAATACCCGGATCGAGAACTCGGCGCATTATCCGCAGCAGAGTGCGGGCATTG CTCAAAACTTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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