© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|553 |
| Gene name | |
| Location | scaffold_114:34096..34628 |
| Strand | + |
| Gene length (bp) | 532 |
| Transcript length (bp) | 414 |
| Coding sequence length (bp) | 411 |
| Protein length (aa) | 137 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03987 | Autophagy_act_C | Autophagocytosis associated protein, active-site domain | 1.3E-26 | 5 | 132 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0019787 | ubiquitin-like protein transferase activity | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0003824 | catalytic activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 65 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 114 | 131 | 17 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 42.01 | 13.95 | 70.07 |
| CcL | In ants, during behavior modification | 71.77 | 29.49 | 114.04 |
| CcD | In ants, recently dead | 66.22 | 26.95 | 105.49 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.089673 | no |
| SC16a | CcD | 0.160010 | no |
| CcL | CcD | 0.826605 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|553 MISAEESDSAAIVKDMSHGDAALVTYEIHLHSSYRVPCLWFTFHNLPVDEPAFSIDTVFRRLVPEEYKSRLQGLG AVGGISADHHPITGVPAFFIHPCLLGDAISGFQCSLDNYLMIWLGLVGGCVGLWVPREMALQ |
| Coding | >Ophio5|553 ATGATAAGTGCAGAAGAGTCTGATTCAGCGGCCATCGTCAAAGACATGTCACATGGCGACGCTGCTCTTGTTACC TATGAGATCCATCTCCACTCCTCCTACAGGGTCCCATGCCTGTGGTTCACCTTCCACAACCTCCCTGTGGATGAA CCCGCCTTTAGCATCGACACAGTCTTCCGCCGCCTGGTCCCCGAGGAGTACAAAAGCAGGCTTCAAGGATTAGGC GCCGTAGGTGGCATCTCGGCGGACCATCATCCCATCACGGGGGTTCCAGCCTTCTTCATCCATCCATGCCTGCTC GGGGACGCCATATCGGGCTTCCAGTGCTCCCTCGACAACTACCTCATGATCTGGCTCGGACTTGTAGGGGGGTGC GTGGGCCTCTGGGTGCCAAGAGAAATGGCCTTACAG |
| Transcript | >Ophio5|553 ATGATAAGTGCAGAAGAGTCTGATTCAGCGGCCATCGTCAAAGACATGTCACATGGCGACGCTGCTCTTGTTACC TATGAGATCCATCTCCACTCCTCCTACAGGGTCCCATGCCTGTGGTTCACCTTCCACAACCTCCCTGTGGATGAA CCCGCCTTTAGCATCGACACAGTCTTCCGCCGCCTGGTCCCCGAGGAGTACAAAAGCAGGCTTCAAGGATTAGGC GCCGTAGGTGGCATCTCGGCGGACCATCATCCCATCACGGGGGTTCCAGCCTTCTTCATCCATCCATGCCTGCTC GGGGACGCCATATCGGGCTTCCAGTGCTCCCTCGACAACTACCTCATGATCTGGCTCGGACTTGTAGGGGGGTGC GTGGGCCTCTGGGTGCCAAGAGAAATGGCCTTACAGTAG |
| Gene | >Ophio5|553 ATGATAAGTGCAGAAGAGTCTGATTCAGTACGGGACGCTCTGTCGGCTCGTCTCCCTTGTCCTGACCATTCCCAG GCGGCCATCGTCAAAGACATGTCACATGGCGACGCTGCTCTTGTTACCTATGAGATCCATCTCCACTCCTCCTAC AGGGTCCCATGCCTGTGGTTCACCTTCCACAACCTCCCTGTGGATGAACCCGCCTTTAGCATCGACACAGTCTTC CGCCGCCTGGTCCCCGAGGAGTACAAAAGCAGGCTTCAAGGATTAGGCGCCGTAGGTGGCATCTCGGCGGACGTA AGTCGACGCCGCTCTCGCCAGGACACTAACGGTATCGGCCGAGTCAGCGCTGACGGTCCCGTAACAGCATCATCC CATCACGGGGGTTCCAGCCTTCTTCATCCATCCATGCCTGCTCGGGGACGCCATATCGGGCTTCCAGTGCTCCCT CGACAACTACCTCATGATCTGGCTCGGACTTGTAGGGGGGTGCGTGGGCCTCTGGGTGCCAAGAGAAATGGCCTT ACAGTAG |