© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5460 |
| Gene name | |
| Location | scaffold_447:3897..5429 |
| Strand | - |
| Gene length (bp) | 1532 |
| Transcript length (bp) | 1467 |
| Coding sequence length (bp) | 1464 |
| Protein length (aa) | 488 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00892 | EamA | EamA-like transporter family | 2.6E-10 | 135 | 251 |
| PF00892 | EamA | EamA-like transporter family | 1.7E-08 | 298 | 437 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04835|YM87_YEAST | Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR253C PE=1 SV=1 | 64 | 437 | 1.0E-47 |
| sp|Q08980|YP264_YEAST | Probable transport protein YPL264C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL264C PE=1 SV=1 | 114 | 437 | 1.0E-44 |
| sp|Q2M3R5|S35G1_HUMAN | Solute carrier family 35 member G1 OS=Homo sapiens GN=SLC35G1 PE=1 SV=1 | 144 | 398 | 3.0E-09 |
| sp|Q8BY79|S35G1_MOUSE | Solute carrier family 35 member G1 OS=Mus musculus GN=Slc35g1 PE=2 SV=1 | 142 | 268 | 7.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 32 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 115 | 134 | 19 |
| 2 | 149 | 168 | 19 |
| 3 | 181 | 203 | 22 |
| 4 | 207 | 229 | 22 |
| 5 | 242 | 259 | 17 |
| 6 | 295 | 317 | 22 |
| 7 | 324 | 346 | 22 |
| 8 | 366 | 388 | 22 |
| 9 | 395 | 414 | 19 |
| 10 | 418 | 440 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5460 MASYGGGRGTNVHGRRVKFCVWMHPFRDGLALHVPPLSSAATRPTGGFQPELSHRSPSAATHAKDEAHQRRSSSS HELRLRSPASPPDVVKQQPLLSEDSSPASPRPRRFWSRNGAAALVALSQLFGALMNLSVRLLELEGSGMHPIQVL LFRHGLATVFCLSYLWWTKAPDGALGKRQVRWLLLARGITGFVSIFSMWYSMIYLPLADATVITFLAPGIAGLLC GFILREPFTGTERLATAVALLGVILIAQPVALFSDPGAPQKDSKPSPSSSPSSSQEGFSNAAAAADERLFAVGVA LLGVMGTAGAFTTLRAISKRTHPMVSINFLGMSCTAICVLVLALAPALDVGQPGLRWVSPTASRQWLLLISLGTL GFASQYLLTVGLAADTSNRANAMVYTHMLFAVVFDRWVFGHRMQLMSVLGCALILGSAVGVVVFVRKPSPSPVPS PLPRDDVETGRSSGLFAMVFRWPKLLAVDGAQRREDSA |
| Coding | >Ophio5|5460 ATGGCCTCGTACGGAGGAGGGCGAGGCACGAACGTCCACGGGCGGCGGGTCAAGTTCTGTGTCTGGATGCACCCT TTCCGTGACGGGCTCGCGCTCCATGTCCCGCCGCTGTCCAGCGCGGCGACGCGGCCGACTGGCGGTTTCCAGCCC GAACTCTCACACCGCTCGCCATCGGCGGCAACACATGCCAAGGACGAGGCTCACCAGCGCCGGTCGTCGTCGAGC CATGAGCTGCGGCTGCGGTCCCCGGCATCGCCTCCGGACGTCGTCAAGCAGCAGCCGCTCCTGTCCGAGGATTCG TCGCCCGCATCTCCCCGGCCGCGCCGCTTCTGGAGCCGGAACGGGGCGGCGGCGCTCGTGGCCCTTTCACAGCTC TTCGGCGCGCTGATGAACCTCAGCGTGCGGCTGCTCGAACTCGAGGGCAGCGGCATGCACCCTATACAGGTTTTG CTCTTTCGGCACGGTCTGGCCACTGTCTTCTGTCTGTCGTACCTGTGGTGGACAAAGGCACCAGACGGCGCGCTC GGCAAGCGACAGGTCCGCTGGCTGCTGCTGGCCAGGGGCATCACCGGGTTCGTCAGCATCTTCAGCATGTGGTAT TCGATGATCTACCTGCCTCTGGCCGACGCCACCGTCATCACTTTTCTGGCGCCGGGAATTGCCGGCCTACTGTGC GGTTTCATCCTCCGCGAGCCCTTTACCGGCACGGAGCGGCTTGCCACGGCCGTTGCGCTGCTGGGTGTTATCCTC ATTGCCCAACCCGTCGCTCTCTTCTCTGATCCAGGCGCACCCCAGAAGGACAGCAAACCATCACCGTCGTCGTCG CCGTCGTCGTCGCAAGAGGGCTTCTCGAATGCGGCGGCGGCGGCTGACGAGCGCCTATTCGCCGTCGGCGTGGCC CTGCTGGGCGTCATGGGCACGGCGGGGGCCTTTACGACGCTGCGGGCCATTAGCAAGCGCACCCATCCGATGGTC TCCATCAACTTCCTCGGAATGAGCTGCACTGCCATCTGCGTCCTCGTCCTGGCGCTGGCCCCGGCACTGGACGTG GGCCAGCCTGGGCTGCGATGGGTGTCGCCCACGGCGTCAAGACAGTGGCTTCTGCTCATCAGCCTCGGGACCCTG GGCTTCGCCTCGCAGTACTTGCTTACCGTCGGGCTCGCGGCCGACACGTCGAACCGGGCCAACGCAATGGTCTAC ACGCACATGCTGTTCGCCGTCGTGTTTGACCGATGGGTCTTTGGACATCGAATGCAGCTGATGAGCGTGCTCGGA TGCGCGTTGATATTGGGTAGCGCTGTGGGCGTCGTCGTGTTCGTGCGCAAGCCGTCACCATCACCCGTGCCATCT CCGCTGCCGCGAGATGATGTCGAAACGGGGCGTAGCAGCGGCTTGTTCGCCATGGTGTTCCGATGGCCTAAGCTC TTGGCTGTTGATGGGGCGCAACGTAGAGAGGATTCTGCT |
| Transcript | >Ophio5|5460 ATGGCCTCGTACGGAGGAGGGCGAGGCACGAACGTCCACGGGCGGCGGGTCAAGTTCTGTGTCTGGATGCACCCT TTCCGTGACGGGCTCGCGCTCCATGTCCCGCCGCTGTCCAGCGCGGCGACGCGGCCGACTGGCGGTTTCCAGCCC GAACTCTCACACCGCTCGCCATCGGCGGCAACACATGCCAAGGACGAGGCTCACCAGCGCCGGTCGTCGTCGAGC CATGAGCTGCGGCTGCGGTCCCCGGCATCGCCTCCGGACGTCGTCAAGCAGCAGCCGCTCCTGTCCGAGGATTCG TCGCCCGCATCTCCCCGGCCGCGCCGCTTCTGGAGCCGGAACGGGGCGGCGGCGCTCGTGGCCCTTTCACAGCTC TTCGGCGCGCTGATGAACCTCAGCGTGCGGCTGCTCGAACTCGAGGGCAGCGGCATGCACCCTATACAGGTTTTG CTCTTTCGGCACGGTCTGGCCACTGTCTTCTGTCTGTCGTACCTGTGGTGGACAAAGGCACCAGACGGCGCGCTC GGCAAGCGACAGGTCCGCTGGCTGCTGCTGGCCAGGGGCATCACCGGGTTCGTCAGCATCTTCAGCATGTGGTAT TCGATGATCTACCTGCCTCTGGCCGACGCCACCGTCATCACTTTTCTGGCGCCGGGAATTGCCGGCCTACTGTGC GGTTTCATCCTCCGCGAGCCCTTTACCGGCACGGAGCGGCTTGCCACGGCCGTTGCGCTGCTGGGTGTTATCCTC ATTGCCCAACCCGTCGCTCTCTTCTCTGATCCAGGCGCACCCCAGAAGGACAGCAAACCATCACCGTCGTCGTCG CCGTCGTCGTCGCAAGAGGGCTTCTCGAATGCGGCGGCGGCGGCTGACGAGCGCCTATTCGCCGTCGGCGTGGCC CTGCTGGGCGTCATGGGCACGGCGGGGGCCTTTACGACGCTGCGGGCCATTAGCAAGCGCACCCATCCGATGGTC TCCATCAACTTCCTCGGAATGAGCTGCACTGCCATCTGCGTCCTCGTCCTGGCGCTGGCCCCGGCACTGGACGTG GGCCAGCCTGGGCTGCGATGGGTGTCGCCCACGGCGTCAAGACAGTGGCTTCTGCTCATCAGCCTCGGGACCCTG GGCTTCGCCTCGCAGTACTTGCTTACCGTCGGGCTCGCGGCCGACACGTCGAACCGGGCCAACGCAATGGTCTAC ACGCACATGCTGTTCGCCGTCGTGTTTGACCGATGGGTCTTTGGACATCGAATGCAGCTGATGAGCGTGCTCGGA TGCGCGTTGATATTGGGTAGCGCTGTGGGCGTCGTCGTGTTCGTGCGCAAGCCGTCACCATCACCCGTGCCATCT CCGCTGCCGCGAGATGATGTCGAAACGGGGCGTAGCAGCGGCTTGTTCGCCATGGTGTTCCGATGGCCTAAGCTC TTGGCTGTTGATGGGGCGCAACGTAGAGAGGATTCTGCTTGA |
| Gene | >Ophio5|5460 ATGGCCTCGTACGGAGGAGGGCGAGGCACGAACGTCCACGGGCGGCGGGTCAAGTTCTGTGTCTGGATGCACCCT TTCCGTGACGGGCTCGCGCTGTAAGCAAGCCACCCGTCGCATCTTCCCGCCGAGATCTGCATCTCATGAGGACAC GACATGCCAGCCATGTCCCGCCGCTGTCCAGCGCGGCGACGCGGCCGACTGGCGGTTTCCAGCCCGAACTCTCAC ACCGCTCGCCATCGGCGGCAACACATGCCAAGGACGAGGCTCACCAGCGCCGGTCGTCGTCGAGCCATGAGCTGC GGCTGCGGTCCCCGGCATCGCCTCCGGACGTCGTCAAGCAGCAGCCGCTCCTGTCCGAGGATTCGTCGCCCGCAT CTCCCCGGCCGCGCCGCTTCTGGAGCCGGAACGGGGCGGCGGCGCTCGTGGCCCTTTCACAGCTCTTCGGCGCGC TGATGAACCTCAGCGTGCGGCTGCTCGAACTCGAGGGCAGCGGCATGCACCCTATACAGGTTTTGCTCTTTCGGC ACGGTCTGGCCACTGTCTTCTGTCTGTCGTACCTGTGGTGGACAAAGGCACCAGACGGCGCGCTCGGCAAGCGAC AGGTCCGCTGGCTGCTGCTGGCCAGGGGCATCACCGGGTTCGTCAGCATCTTCAGCATGTGGTATTCGATGATCT ACCTGCCTCTGGCCGACGCCACCGTCATCACTTTTCTGGCGCCGGGAATTGCCGGCCTACTGTGCGGTTTCATCC TCCGCGAGCCCTTTACCGGCACGGAGCGGCTTGCCACGGCCGTTGCGCTGCTGGGTGTTATCCTCATTGCCCAAC CCGTCGCTCTCTTCTCTGATCCAGGCGCACCCCAGAAGGACAGCAAACCATCACCGTCGTCGTCGCCGTCGTCGT CGCAAGAGGGCTTCTCGAATGCGGCGGCGGCGGCTGACGAGCGCCTATTCGCCGTCGGCGTGGCCCTGCTGGGCG TCATGGGCACGGCGGGGGCCTTTACGACGCTGCGGGCCATTAGCAAGCGCACCCATCCGATGGTCTCCATCAACT TCCTCGGAATGAGCTGCACTGCCATCTGCGTCCTCGTCCTGGCGCTGGCCCCGGCACTGGACGTGGGCCAGCCTG GGCTGCGATGGGTGTCGCCCACGGCGTCAAGACAGTGGCTTCTGCTCATCAGCCTCGGGACCCTGGGCTTCGCCT CGCAGTACTTGCTTACCGTCGGGCTCGCGGCCGACACGTCGAACCGGGCCAACGCAATGGTCTACACGCACATGC TGTTCGCCGTCGTGTTTGACCGATGGGTCTTTGGACATCGAATGCAGCTGATGAGCGTGCTCGGATGCGCGTTGA TATTGGGTAGCGCTGTGGGCGTCGTCGTGTTCGTGCGCAAGCCGTCACCATCACCCGTGCCATCTCCGCTGCCGC GAGATGATGTCGAAACGGGGCGTAGCAGCGGCTTGTTCGCCATGGTGTTCCGATGGCCTAAGCTCTTGGCTGTTG ATGGGGCGCAACGTAGAGAGGATTCTGCTTGA |