© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5444 |
| Gene name | |
| Location | scaffold_445:2797..4083 |
| Strand | - |
| Gene length (bp) | 1286 |
| Transcript length (bp) | 1212 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08640 | U3_assoc_6 | U3 small nucleolar RNA-associated protein 6 | 8.5E-26 | 12 | 80 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02354|UTP6_YEAST | U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1 SV=2 | 7 | 281 | 1.0E-31 |
| sp|O60188|UTP6_SCHPO | U3 small nucleolar RNA-associated protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp6 PE=3 SV=1 | 4 | 198 | 5.0E-30 |
| sp|Q9NYH9|UTP6_HUMAN | U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens GN=UTP6 PE=2 SV=2 | 12 | 216 | 5.0E-11 |
| sp|Q8VCY6|UTP6_MOUSE | U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus GN=Utp6 PE=2 SV=1 | 12 | 216 | 6.0E-11 |
| sp|Q54WN5|UTP6_DICDI | U3 small nucleolar RNA-associated protein 6 homolog OS=Dictyostelium discoideum GN=utp6 PE=1 SV=1 | 15 | 191 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Yes |
| GO:0030515 | snoRNA binding | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0030490 | maturation of SSU-rRNA | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0005488 | binding | No |
| GO:0034470 | ncRNA processing | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0006364 | rRNA processing | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016072 | rRNA metabolic process | No |
| GO:0003723 | RNA binding | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 41 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 84.22 | 45.91 | 122.53 |
| CcL | In ants, during behavior modification | 70.13 | 37.75 | 102.52 |
| CcD | In ants, recently dead | 94.59 | 51.71 | 137.46 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.463799 | no |
| SC16a | CcD | 0.658404 | no |
| CcL | CcD | 0.203797 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5444 MAGVAEKARFYLERSVPQLREWEEKEIFSKDEIRTIVQKRNDFELRVLSPGNKPSEWSSYAKWEQSLEALRTKRC KRLKIRHLNPAYTGQSRVMTIYERSVNKHPSNGDLWREYLAYVATIKAAKRWRKTMTSALRMKPTDSELWIMAGR RSAHNGDMASARSFFMRGCRFCTKDCGLWLEYARCEMQWLAKVDKRKEAPKTDALRPDRTDDGDELSLLGSDDDD DDDEGNEDGEGGSGLPVASNARPNVIDQHSRQVLESNPAMDGAIPMAIFDIARKQVFFTPDFAETFFIMISSFRN VSVQPKISQHVLDTMDTMYPNHPSTCSCHIRQPILGLSPHTAEFPRNLRDVLVRMTERLETTTDRPALVQKTMAW MDEYLALDNLDKGIRAVLEHIKGKVADS |
| Coding | >Ophio5|5444 ATGGCGGGTGTCGCAGAAAAGGCCAGGTTCTATCTCGAGCGATCGGTCCCGCAGCTTCGAGAGTGGGAAGAGAAG GAAATCTTTTCCAAGGACGAAATCCGCACCATTGTCCAGAAGCGCAACGACTTTGAGCTCAGAGTTCTGTCTCCC GGGAACAAGCCTTCCGAATGGTCCTCGTATGCCAAGTGGGAGCAGTCGCTCGAAGCGCTGCGAACCAAACGGTGC AAGCGACTCAAGATACGCCACCTGAATCCAGCATATACCGGCCAGAGCCGCGTCATGACCATCTACGAGCGATCC GTCAACAAACACCCATCCAACGGCGATTTGTGGCGCGAATATCTGGCCTACGTGGCCACCATCAAAGCCGCCAAG CGATGGCGGAAGACCATGACCAGCGCCCTGCGCATGAAGCCGACCGACTCAGAGCTGTGGATCATGGCCGGCCGC CGATCCGCGCATAACGGAGACATGGCGTCGGCGAGGAGCTTCTTCATGCGGGGGTGTCGGTTCTGCACAAAGGAT TGCGGGCTGTGGCTCGAGTATGCTCGGTGCGAGATGCAATGGCTGGCCAAAGTGGACAAACGCAAGGAGGCACCG AAAACCGATGCGCTGCGGCCGGACAGAACCGATGATGGCGACGAGCTGAGTCTTTTGGGTAGCGACGACGACGAC GACGACGACGAAGGAAATGAGGACGGAGAGGGAGGAAGCGGATTGCCCGTCGCATCAAACGCGCGGCCCAATGTC ATCGACCAGCACTCCCGCCAAGTGCTCGAATCGAATCCCGCCATGGATGGTGCCATCCCCATGGCCATATTTGAC ATAGCACGGAAGCAAGTTTTCTTCACGCCAGACTTTGCAGAAACGTTTTTCATCATGATTTCCTCGTTTCGTAAC GTCTCTGTACAGCCCAAGATTTCCCAGCACGTCCTGGACACCATGGACACCATGTACCCGAACCACCCGTCTACT TGCAGCTGCCACATCCGGCAACCCATACTGGGGTTGAGTCCTCACACGGCCGAGTTTCCCCGGAACTTGCGAGAC GTCCTGGTTCGCATGACAGAAAGGCTGGAAACGACGACGGACCGGCCAGCCCTGGTTCAGAAGACGATGGCGTGG ATGGACGAATATCTCGCCTTGGACAATCTGGACAAGGGCATCAGGGCAGTTTTGGAACACATTAAAGGAAAAGTG GCGGATTCA |
| Transcript | >Ophio5|5444 ATGGCGGGTGTCGCAGAAAAGGCCAGGTTCTATCTCGAGCGATCGGTCCCGCAGCTTCGAGAGTGGGAAGAGAAG GAAATCTTTTCCAAGGACGAAATCCGCACCATTGTCCAGAAGCGCAACGACTTTGAGCTCAGAGTTCTGTCTCCC GGGAACAAGCCTTCCGAATGGTCCTCGTATGCCAAGTGGGAGCAGTCGCTCGAAGCGCTGCGAACCAAACGGTGC AAGCGACTCAAGATACGCCACCTGAATCCAGCATATACCGGCCAGAGCCGCGTCATGACCATCTACGAGCGATCC GTCAACAAACACCCATCCAACGGCGATTTGTGGCGCGAATATCTGGCCTACGTGGCCACCATCAAAGCCGCCAAG CGATGGCGGAAGACCATGACCAGCGCCCTGCGCATGAAGCCGACCGACTCAGAGCTGTGGATCATGGCCGGCCGC CGATCCGCGCATAACGGAGACATGGCGTCGGCGAGGAGCTTCTTCATGCGGGGGTGTCGGTTCTGCACAAAGGAT TGCGGGCTGTGGCTCGAGTATGCTCGGTGCGAGATGCAATGGCTGGCCAAAGTGGACAAACGCAAGGAGGCACCG AAAACCGATGCGCTGCGGCCGGACAGAACCGATGATGGCGACGAGCTGAGTCTTTTGGGTAGCGACGACGACGAC GACGACGACGAAGGAAATGAGGACGGAGAGGGAGGAAGCGGATTGCCCGTCGCATCAAACGCGCGGCCCAATGTC ATCGACCAGCACTCCCGCCAAGTGCTCGAATCGAATCCCGCCATGGATGGTGCCATCCCCATGGCCATATTTGAC ATAGCACGGAAGCAAGTTTTCTTCACGCCAGACTTTGCAGAAACGTTTTTCATCATGATTTCCTCGTTTCGTAAC GTCTCTGTACAGCCCAAGATTTCCCAGCACGTCCTGGACACCATGGACACCATGTACCCGAACCACCCGTCTACT TGCAGCTGCCACATCCGGCAACCCATACTGGGGTTGAGTCCTCACACGGCCGAGTTTCCCCGGAACTTGCGAGAC GTCCTGGTTCGCATGACAGAAAGGCTGGAAACGACGACGGACCGGCCAGCCCTGGTTCAGAAGACGATGGCGTGG ATGGACGAATATCTCGCCTTGGACAATCTGGACAAGGGCATCAGGGCAGTTTTGGAACACATTAAAGGAAAAGTG GCGGATTCATGA |
| Gene | >Ophio5|5444 ATGGCGGGTGTCGCAGAAAAGGCCAGGTTCTATCTCGAGCGATCGGTCCCGCAGCTTCGAGAGTGGGAAGAGAAG GAAATCTTTTCCAAGGCGTGTGCCTCCGCGCCTCTGCGCCTCTTACCTACCTCCTGCCCCCTGCCCTTCCTTGGC TAATGCGCCACCAGGACGAAATCCGCACCATTGTCCAGAAGCGCAACGACTTTGAGCTCAGAGTTCTGTCTCCCG GGAACAAGCCTTCCGAATGGTCCTCGTATGCCAAGTGGGAGCAGTCGCTCGAAGCGCTGCGAACCAAACGGTGCA AGCGACTCAAGATACGCCACCTGAATCCAGCATATACCGGCCAGAGCCGCGTCATGACCATCTACGAGCGATCCG TCAACAAACACCCATCCAACGGCGATTTGTGGCGCGAATATCTGGCCTACGTGGCCACCATCAAAGCCGCCAAGC GATGGCGGAAGACCATGACCAGCGCCCTGCGCATGAAGCCGACCGACTCAGAGCTGTGGATCATGGCCGGCCGCC GATCCGCGCATAACGGAGACATGGCGTCGGCGAGGAGCTTCTTCATGCGGGGGTGTCGGTTCTGCACAAAGGATT GCGGGCTGTGGCTCGAGTATGCTCGGTGCGAGATGCAATGGCTGGCCAAAGTGGACAAACGCAAGGAGGCACCGA AAACCGATGCGCTGCGGCCGGACAGAACCGATGATGGCGACGAGCTGAGTCTTTTGGGTAGCGACGACGACGACG ACGACGACGAAGGAAATGAGGACGGAGAGGGAGGAAGCGGATTGCCCGTCGCATCAAACGCGCGGCCCAATGTCA TCGACCAGCACTCCCGCCAAGTGCTCGAATCGAATCCCGCCATGGATGGTGCCATCCCCATGGCCATATTTGACA TAGCACGGAAGCAAGTTTTCTTCACGCCAGACTTTGCAGAAACGTTTTTCATCATGATTTCCTCGTTTCGTAACG TCTCTGTACAGCCCAAGATTTCCCAGCACGTCCTGGACACCATGGACACCATGTACCCGAACCACCCGTCTACTT GCAGCTGCCACATCCGGCAACCCATACTGGGGTTGAGTCCTCACACGGCCGAGTTTCCCCGGAACTTGCGAGACG TCCTGGTTCGCATGACAGAAAGGCTGGAAACGACGACGGACCGGCCAGCCCTGGTTCAGAAGACGATGGCGTGGA TGGACGAATATCTCGCCTTGGACAATCTGGACAAGGGCATCAGGGCAGTTTTGGAACACATTAAAGGAAAAGTGG CGGATTCATGA |