Protein ID | Ophio5|5431 |
Gene name | |
Location | scaffold_443:10988..11856 |
Strand | - |
Gene length (bp) | 868 |
Transcript length (bp) | 783 |
Coding sequence length (bp) | 780 |
Protein length (aa) | 260 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 16 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 237 | 259 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
SC16a | Pure fungal culture | 192.54 | 104.35 | 280.72 |
CcL | In ants, during behavior modification | 578.27 | 263.24 | 893.31 |
CcD | In ants, recently dead | 691.62 | 311.29 | 1071.95 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
SC16a | CcL | 0.000286 | yes |
SC16a | CcD | 0.000286 | yes |
CcL | CcD | 0.552766 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|5431 MHVSSTLAFAGVATASFQLYHMAVSPNGGLVRRGNGAYQPEIATCQSGNSCAEACGEGFELCPATGAAADEAHCV NRLQHETCCTGGTGHSCAAGFYCTINKAGQNICCPEGQDLAACAAEQKVAGELKLATSTSAPPPPPPPPTTTTST TTKSTKMMALTTSMTPVVTTTPLSSFKALVNTTTVASTIYVSPLSSTGCSTAPWPALNATVPHTALASQAPFATA QPSSNPTTALGVSAAGAGAGVSYLLLVVTALVALL |
Coding | >Ophio5|5431 ATGCACGTCTCGTCTACGCTCGCCTTCGCAGGCGTCGCTACCGCCTCCTTCCAGCTCTACCACATGGCCGTCTCG CCCAACGGGGGCCTCGTCCGTCGCGGAAACGGCGCCTATCAGCCGGAGATTGCGACGTGTCAGAGTGGGAATAGT TGCGCCGAGGCTTGTGGTGAGGGCTTCGAGTTGTGTCCTGCTACTGGGGCGGCGGCGGATGAGGCGCATTGCGTG AATCGTCTGCAGCATGAGACGTGCTGCACCGGCGGTACTGGCCATTCCTGTGCCGCTGGCTTCTACTGCACCATC AACAAGGCTGGACAAAATATCTGCTGTCCCGAGGGTCAGGACCTGGCCGCTTGCGCCGCCGAGCAAAAGGTCGCG GGTGAGCTGAAGTTGGCCACTTCGACTTCCGCTCCTCCTCCTCCTCCTCCTCCTCCTACTACTACGACGTCTACC ACGACGAAATCGACCAAGATGATGGCCCTGACGACATCCATGACGCCGGTCGTGACGACGACGCCGCTCTCGAGC TTCAAGGCGCTCGTCAACACCACCACCGTCGCCAGCACAATCTACGTCAGCCCCCTCAGCTCGACCGGCTGCAGC ACCGCTCCTTGGCCGGCTCTCAACGCTACCGTCCCCCACACGGCACTGGCCAGCCAGGCGCCCTTTGCCACGGCC CAGCCGTCGTCCAACCCTACTACCGCTCTGGGCGTCAGTGCCGCCGGTGCCGGTGCCGGTGTCAGCTACCTGCTA CTCGTCGTGACAGCTCTGGTCGCCCTGCTG |
Transcript | >Ophio5|5431 ATGCACGTCTCGTCTACGCTCGCCTTCGCAGGCGTCGCTACCGCCTCCTTCCAGCTCTACCACATGGCCGTCTCG CCCAACGGGGGCCTCGTCCGTCGCGGAAACGGCGCCTATCAGCCGGAGATTGCGACGTGTCAGAGTGGGAATAGT TGCGCCGAGGCTTGTGGTGAGGGCTTCGAGTTGTGTCCTGCTACTGGGGCGGCGGCGGATGAGGCGCATTGCGTG AATCGTCTGCAGCATGAGACGTGCTGCACCGGCGGTACTGGCCATTCCTGTGCCGCTGGCTTCTACTGCACCATC AACAAGGCTGGACAAAATATCTGCTGTCCCGAGGGTCAGGACCTGGCCGCTTGCGCCGCCGAGCAAAAGGTCGCG GGTGAGCTGAAGTTGGCCACTTCGACTTCCGCTCCTCCTCCTCCTCCTCCTCCTCCTACTACTACGACGTCTACC ACGACGAAATCGACCAAGATGATGGCCCTGACGACATCCATGACGCCGGTCGTGACGACGACGCCGCTCTCGAGC TTCAAGGCGCTCGTCAACACCACCACCGTCGCCAGCACAATCTACGTCAGCCCCCTCAGCTCGACCGGCTGCAGC ACCGCTCCTTGGCCGGCTCTCAACGCTACCGTCCCCCACACGGCACTGGCCAGCCAGGCGCCCTTTGCCACGGCC CAGCCGTCGTCCAACCCTACTACCGCTCTGGGCGTCAGTGCCGCCGGTGCCGGTGCCGGTGTCAGCTACCTGCTA CTCGTCGTGACAGCTCTGGTCGCCCTGCTGTGA |
Gene | >Ophio5|5431 ATGCACGTCTCGTCTACGCTCGCCTTCGCAGGCGTCGCTACCGCCTCCTTCCAGCTCTACCACATGGCCGTCTCG CCCAACGGGGGCCTCGTCCGTCGCGGAAACGGCGCCTATCAGCCGGAGATTGCGACGTGTCAGAGTGGGAATAGT TGCGCCGAGGCTTGTGGTGAGGGCTTCGAGTTGTGTCCTGCTACTGGGGCGGCGGCGGATGAGGCGCATTGCGTG AATCGTCTGCAGCATGAGACGTGCTGCACCGGCGGTACTGGCCGTATGTCGTTGTGTGCTCTTTTTTTCCTCTCC TTTTTTTCTTCTTCTTTTTTTTTTCTTTTGCTGACTTGCGGCTTGCTTGCCAGATTCCTGTGCCGCTGGCTTCTA CTGCACCATCAACAAGGCTGGACAAAATATCTGCTGTCCCGAGGGTCAGGACCTGGCCGCTTGCGCCGCCGAGCA AAAGGTCGCGGGTGAGCTGAAGTTGGCCACTTCGACTTCCGCTCCTCCTCCTCCTCCTCCTCCTCCTACTACTAC GACGTCTACCACGACGAAATCGACCAAGATGATGGCCCTGACGACATCCATGACGCCGGTCGTGACGACGACGCC GCTCTCGAGCTTCAAGGCGCTCGTCAACACCACCACCGTCGCCAGCACAATCTACGTCAGCCCCCTCAGCTCGAC CGGCTGCAGCACCGCTCCTTGGCCGGCTCTCAACGCTACCGTCCCCCACACGGCACTGGCCAGCCAGGCGCCCTT TGCCACGGCCCAGCCGTCGTCCAACCCTACTACCGCTCTGGGCGTCAGTGCCGCCGGTGCCGGTGCCGGTGTCAG CTACCTGCTACTCGTCGTGACAGCTCTGGTCGCCCTGCTGTGA |