Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5431
Gene name
Locationscaffold_443:10988..11856
Strand-
Gene length (bp)868
Transcript length (bp)783
Coding sequence length (bp)780
Protein length (aa) 260

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 237 259 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 192.54 104.35 280.72
CcL In ants, during behavior modification 578.27 263.24 893.31
CcD In ants, recently dead 691.62 311.29 1071.95

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.000286 yes
CcL CcD 0.552766 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5431
MHVSSTLAFAGVATASFQLYHMAVSPNGGLVRRGNGAYQPEIATCQSGNSCAEACGEGFELCPATGAAADEAHCV
NRLQHETCCTGGTGHSCAAGFYCTINKAGQNICCPEGQDLAACAAEQKVAGELKLATSTSAPPPPPPPPTTTTST
TTKSTKMMALTTSMTPVVTTTPLSSFKALVNTTTVASTIYVSPLSSTGCSTAPWPALNATVPHTALASQAPFATA
QPSSNPTTALGVSAAGAGAGVSYLLLVVTALVALL
Coding >Ophio5|5431
ATGCACGTCTCGTCTACGCTCGCCTTCGCAGGCGTCGCTACCGCCTCCTTCCAGCTCTACCACATGGCCGTCTCG
CCCAACGGGGGCCTCGTCCGTCGCGGAAACGGCGCCTATCAGCCGGAGATTGCGACGTGTCAGAGTGGGAATAGT
TGCGCCGAGGCTTGTGGTGAGGGCTTCGAGTTGTGTCCTGCTACTGGGGCGGCGGCGGATGAGGCGCATTGCGTG
AATCGTCTGCAGCATGAGACGTGCTGCACCGGCGGTACTGGCCATTCCTGTGCCGCTGGCTTCTACTGCACCATC
AACAAGGCTGGACAAAATATCTGCTGTCCCGAGGGTCAGGACCTGGCCGCTTGCGCCGCCGAGCAAAAGGTCGCG
GGTGAGCTGAAGTTGGCCACTTCGACTTCCGCTCCTCCTCCTCCTCCTCCTCCTCCTACTACTACGACGTCTACC
ACGACGAAATCGACCAAGATGATGGCCCTGACGACATCCATGACGCCGGTCGTGACGACGACGCCGCTCTCGAGC
TTCAAGGCGCTCGTCAACACCACCACCGTCGCCAGCACAATCTACGTCAGCCCCCTCAGCTCGACCGGCTGCAGC
ACCGCTCCTTGGCCGGCTCTCAACGCTACCGTCCCCCACACGGCACTGGCCAGCCAGGCGCCCTTTGCCACGGCC
CAGCCGTCGTCCAACCCTACTACCGCTCTGGGCGTCAGTGCCGCCGGTGCCGGTGCCGGTGTCAGCTACCTGCTA
CTCGTCGTGACAGCTCTGGTCGCCCTGCTG
Transcript >Ophio5|5431
ATGCACGTCTCGTCTACGCTCGCCTTCGCAGGCGTCGCTACCGCCTCCTTCCAGCTCTACCACATGGCCGTCTCG
CCCAACGGGGGCCTCGTCCGTCGCGGAAACGGCGCCTATCAGCCGGAGATTGCGACGTGTCAGAGTGGGAATAGT
TGCGCCGAGGCTTGTGGTGAGGGCTTCGAGTTGTGTCCTGCTACTGGGGCGGCGGCGGATGAGGCGCATTGCGTG
AATCGTCTGCAGCATGAGACGTGCTGCACCGGCGGTACTGGCCATTCCTGTGCCGCTGGCTTCTACTGCACCATC
AACAAGGCTGGACAAAATATCTGCTGTCCCGAGGGTCAGGACCTGGCCGCTTGCGCCGCCGAGCAAAAGGTCGCG
GGTGAGCTGAAGTTGGCCACTTCGACTTCCGCTCCTCCTCCTCCTCCTCCTCCTCCTACTACTACGACGTCTACC
ACGACGAAATCGACCAAGATGATGGCCCTGACGACATCCATGACGCCGGTCGTGACGACGACGCCGCTCTCGAGC
TTCAAGGCGCTCGTCAACACCACCACCGTCGCCAGCACAATCTACGTCAGCCCCCTCAGCTCGACCGGCTGCAGC
ACCGCTCCTTGGCCGGCTCTCAACGCTACCGTCCCCCACACGGCACTGGCCAGCCAGGCGCCCTTTGCCACGGCC
CAGCCGTCGTCCAACCCTACTACCGCTCTGGGCGTCAGTGCCGCCGGTGCCGGTGCCGGTGTCAGCTACCTGCTA
CTCGTCGTGACAGCTCTGGTCGCCCTGCTGTGA
Gene >Ophio5|5431
ATGCACGTCTCGTCTACGCTCGCCTTCGCAGGCGTCGCTACCGCCTCCTTCCAGCTCTACCACATGGCCGTCTCG
CCCAACGGGGGCCTCGTCCGTCGCGGAAACGGCGCCTATCAGCCGGAGATTGCGACGTGTCAGAGTGGGAATAGT
TGCGCCGAGGCTTGTGGTGAGGGCTTCGAGTTGTGTCCTGCTACTGGGGCGGCGGCGGATGAGGCGCATTGCGTG
AATCGTCTGCAGCATGAGACGTGCTGCACCGGCGGTACTGGCCGTATGTCGTTGTGTGCTCTTTTTTTCCTCTCC
TTTTTTTCTTCTTCTTTTTTTTTTCTTTTGCTGACTTGCGGCTTGCTTGCCAGATTCCTGTGCCGCTGGCTTCTA
CTGCACCATCAACAAGGCTGGACAAAATATCTGCTGTCCCGAGGGTCAGGACCTGGCCGCTTGCGCCGCCGAGCA
AAAGGTCGCGGGTGAGCTGAAGTTGGCCACTTCGACTTCCGCTCCTCCTCCTCCTCCTCCTCCTCCTACTACTAC
GACGTCTACCACGACGAAATCGACCAAGATGATGGCCCTGACGACATCCATGACGCCGGTCGTGACGACGACGCC
GCTCTCGAGCTTCAAGGCGCTCGTCAACACCACCACCGTCGCCAGCACAATCTACGTCAGCCCCCTCAGCTCGAC
CGGCTGCAGCACCGCTCCTTGGCCGGCTCTCAACGCTACCGTCCCCCACACGGCACTGGCCAGCCAGGCGCCCTT
TGCCACGGCCCAGCCGTCGTCCAACCCTACTACCGCTCTGGGCGTCAGTGCCGCCGGTGCCGGTGCCGGTGTCAG
CTACCTGCTACTCGTCGTGACAGCTCTGGTCGCCCTGCTGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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