Protein ID | Ophio5|5402 |
Gene name | |
Location | scaffold_44:55998..57595 |
Strand | + |
Gene length (bp) | 1597 |
Transcript length (bp) | 1383 |
Coding sequence length (bp) | 1380 |
Protein length (aa) | 460 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16010 | CDH-cyt | Cytochrome domain of cellobiose dehydrogenase | 2.6E-22 | 24 | 184 |
PF03188 | Cytochrom_B561 | Eukaryotic cytochrome b561 | 2.5E-08 | 243 | 340 |
PF10348 | DUF2427 | Domain of unknown function (DUF2427) | 2.0E-05 | 219 | 304 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q0WRW8|B561K_ARATH | Cytochrome b561 and DOMON domain-containing protein At3g07570 OS=Arabidopsis thaliana GN=At3g07570 PE=2 SV=1 | 141 | 364 | 2.0E-06 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.0806 | 0.0898 | 0.3442 | 0.4681 | 0.1025 | 0.0038 | 0.3833 | 0.6691 | 0.4354 | 0.0023 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 19 | 0.998073 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 220 | 242 | 22 |
2 | 249 | 271 | 22 |
3 | 281 | 303 | 22 |
4 | 323 | 340 | 17 |
5 | 350 | 369 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 2468 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|5402 MRLLHMTLAAAAAAAAVAAQQSTFLSPSRDLAFALSVPDTDNTDIFFSIRAPINYAWAAVGLGSDDMKGALFLVI YRNKHRDNVTLSPRLAYGNYEPQHYPEMQYDVLPGTGIVDDHMVFNARCTQHCRSWPAVDSNSGYLDVSSPTEKA IYALGPRSGFGSDNPAADLQFHREFGVFTIDIKRTLGAPDPPTLADNSVAVGTSLEYHNTHRRDHRSGLHGTFMV FAVVILLPVGAALRHLGRWARYHVLCQSTAVAIMLGGVATGVLTSLRYQRSRNFRSPHQILGFIVIGFVLVQLAL GFLHRRKNIKTHAPTEYGKYHRYLGGIIIVFGTLNAFFGFDLALDYKVGYALCAIVIVTIFVGLFFYLGRQGLRE KHQRLAAAGGPHGAAPTGYQPQPWREDNPDGSPREAPPSYDASSSQHIGLQPVSAQPSPWRSSDVKDGGDDQPAL GGAQHPREFA |
Coding | >Ophio5|5402 ATGAGGCTGCTGCATATGACTCTGGCTGCTGCTGCTGCAGCAGCTGCTGTGGCAGCTCAACAGTCCACCTTTCTC TCCCCCAGCCGCGACCTCGCCTTCGCCCTCTCCGTTCCCGACACCGACAACACAGACATCTTCTTCAGCATCCGC GCCCCCATCAACTATGCCTGGGCCGCCGTCGGCCTTGGTAGTGACGACATGAAAGGCGCCCTCTTCCTCGTCATC TACCGTAACAAACATCGCGACAACGTCACCCTCTCTCCGCGCCTGGCCTATGGCAACTATGAGCCTCAGCATTAC CCGGAGATGCAGTACGATGTTCTTCCCGGCACCGGTATCGTCGATGATCACATGGTCTTCAACGCTCGCTGCACA CAACATTGCCGCAGCTGGCCTGCTGTCGACTCTAATAGTGGCTATCTGGACGTCTCGTCGCCGACGGAAAAGGCC ATCTATGCCCTCGGGCCACGCAGCGGCTTTGGCAGCGATAATCCCGCAGCTGATCTGCAGTTTCATCGCGAGTTT GGAGTCTTTACCATCGATATCAAGCGGACTCTTGGTGCTCCCGATCCGCCCACACTGGCTGACAACTCTGTCGCC GTCGGCACTTCGCTCGAGTACCACAACACCCACCGCCGTGACCACCGCTCTGGTCTGCACGGTACTTTTATGGTC TTTGCCGTCGTCATCCTTTTGCCTGTTGGCGCAGCTCTCCGCCATCTCGGACGCTGGGCTCGCTATCATGTCCTC TGTCAGTCTACGGCCGTCGCCATTATGCTCGGCGGTGTCGCTACTGGCGTCTTGACCAGTCTCCGCTATCAGAGG TCGCGAAATTTCCGCTCCCCCCATCAGATCCTCGGCTTCATCGTCATCGGCTTCGTCCTCGTCCAGCTGGCCCTC GGCTTCCTCCATCGCCGGAAGAATATCAAGACACATGCGCCGACCGAGTACGGCAAGTACCATCGCTATCTGGGT GGCATCATCATCGTCTTTGGCACCCTCAATGCCTTCTTTGGTTTCGACCTTGCCCTCGACTACAAGGTTGGCTAC GCGCTGTGCGCCATCGTCATCGTCACCATCTTTGTCGGCCTCTTCTTTTACCTCGGACGCCAAGGTTTACGGGAG AAGCACCAGCGGCTGGCGGCGGCGGGCGGCCCACACGGCGCCGCGCCTACGGGCTACCAGCCGCAGCCATGGCGA GAAGACAACCCCGACGGCAGTCCGAGAGAGGCGCCGCCGAGCTACGACGCCTCTTCTTCGCAGCACATCGGTCTT CAGCCAGTCTCGGCGCAGCCTTCGCCCTGGCGCAGCTCCGACGTCAAGGACGGTGGGGACGACCAGCCGGCGCTG GGCGGGGCGCAACATCCGAGGGAGTTTGCT |
Transcript | >Ophio5|5402 ATGAGGCTGCTGCATATGACTCTGGCTGCTGCTGCTGCAGCAGCTGCTGTGGCAGCTCAACAGTCCACCTTTCTC TCCCCCAGCCGCGACCTCGCCTTCGCCCTCTCCGTTCCCGACACCGACAACACAGACATCTTCTTCAGCATCCGC GCCCCCATCAACTATGCCTGGGCCGCCGTCGGCCTTGGTAGTGACGACATGAAAGGCGCCCTCTTCCTCGTCATC TACCGTAACAAACATCGCGACAACGTCACCCTCTCTCCGCGCCTGGCCTATGGCAACTATGAGCCTCAGCATTAC CCGGAGATGCAGTACGATGTTCTTCCCGGCACCGGTATCGTCGATGATCACATGGTCTTCAACGCTCGCTGCACA CAACATTGCCGCAGCTGGCCTGCTGTCGACTCTAATAGTGGCTATCTGGACGTCTCGTCGCCGACGGAAAAGGCC ATCTATGCCCTCGGGCCACGCAGCGGCTTTGGCAGCGATAATCCCGCAGCTGATCTGCAGTTTCATCGCGAGTTT GGAGTCTTTACCATCGATATCAAGCGGACTCTTGGTGCTCCCGATCCGCCCACACTGGCTGACAACTCTGTCGCC GTCGGCACTTCGCTCGAGTACCACAACACCCACCGCCGTGACCACCGCTCTGGTCTGCACGGTACTTTTATGGTC TTTGCCGTCGTCATCCTTTTGCCTGTTGGCGCAGCTCTCCGCCATCTCGGACGCTGGGCTCGCTATCATGTCCTC TGTCAGTCTACGGCCGTCGCCATTATGCTCGGCGGTGTCGCTACTGGCGTCTTGACCAGTCTCCGCTATCAGAGG TCGCGAAATTTCCGCTCCCCCCATCAGATCCTCGGCTTCATCGTCATCGGCTTCGTCCTCGTCCAGCTGGCCCTC GGCTTCCTCCATCGCCGGAAGAATATCAAGACACATGCGCCGACCGAGTACGGCAAGTACCATCGCTATCTGGGT GGCATCATCATCGTCTTTGGCACCCTCAATGCCTTCTTTGGTTTCGACCTTGCCCTCGACTACAAGGTTGGCTAC GCGCTGTGCGCCATCGTCATCGTCACCATCTTTGTCGGCCTCTTCTTTTACCTCGGACGCCAAGGTTTACGGGAG AAGCACCAGCGGCTGGCGGCGGCGGGCGGCCCACACGGCGCCGCGCCTACGGGCTACCAGCCGCAGCCATGGCGA GAAGACAACCCCGACGGCAGTCCGAGAGAGGCGCCGCCGAGCTACGACGCCTCTTCTTCGCAGCACATCGGTCTT CAGCCAGTCTCGGCGCAGCCTTCGCCCTGGCGCAGCTCCGACGTCAAGGACGGTGGGGACGACCAGCCGGCGCTG GGCGGGGCGCAACATCCGAGGGAGTTTGCTTGA |
Gene | >Ophio5|5402 ATGAGGCTGCTGCATATGACTCTGGCTGCTGCTGCTGCAGCAGGTGAGCAGTCGTCTTCTTCTTCTTCTTCTCCT CCACCGTCTTCGTCTCGTCCGGCGACAGAAAAGAAGAAGAAAAGAAAAGCAGGCTGACGATGCACAGCTGCTGTG GCAGCTCAACAGTCCACCTTTCTCTCCCCCAGCCGCGACCTCGCCTTCGCCCTCTCCGTTCCCGACACCGACAAC ACAGACATCTTCTTCAGCATCCGCGCCCCCATCAACTATGCCTGGGCCGCCGTCGGCCTTGGTAGTGACGACATG AAAGGCGCCCTCTTCCTCGTCATCTACCGTAACAAACATCGCGACAACGTCACCCTCTCTCCGCGCCTGGCCTAT GGCAACTATGAGCCTCAGCATTACCCGGAGATGCAGTACGATGTTCTTCCCGGCACCGGTATCGTCGATGATCAC ATGGTCTTCAACGCTCGCTGCACACAACATTGCCGCAGCTGGCCTGCTGTCGACTCTAATAGTGGCTATCTGGAC GTCTCGTCGCCGACGGAAAAGGCCATCTATGCCCTCGGGCCACGCAGCGGCTTTGGCAGCGATAATCCCGCAGCT GATCTGCAGTTTCATCGCGAGTTTGGAGTCTTTACCATCGATATCAAGCGGACTCTTGGTGCTCCCGATCCGCCC ACACTGGCTGACAACTCTGTCGCCGTCGGCACTTCGCTCGAGTACCACAACACCCACCGCCGTGACCACCGCTCT GGTCTGCACGGTACTTTTATGGTCTTTGCCGTCGTCATCCTTTTGCCTGTTGGCGCAGCTCTCCGCCATCTCGGA CGCTGGGCTCGCTATCATGTCCTCTGTCAGTCTACGGCCGTCGCCATTATGCTCGGCGGTGTCGCTACTGGCGTC TTGACCAGTCTCCGCTATCAGAGGGTGTGTTGCCCCCTTTTCTCCCTTGCCGCGCACACACTGGCTTACATGGCA CTAGTCGCGAAATTTCCGCTCCCCCCATCAGATCCTCGGCTTCATCGTCATCGGCTTCGTCCTCGTCCAGCTGGC CCTCGGCTTCCTCCATCGCCGGAAGAATATCAAGACACATGCGCCGACCGAGTACGGCAAGTACCATCGCTATCT GGGTGGCATCATCATCGTCTTTGGCACCCTCAATGCCTTCTTGTATGTCTTCTCCCCGCTTCCTTGGCTACGGCC ATCCTTTACTCACTGGCAACCTCGCAGTGGTTTCGACCTTGCCCTCGACTACAAGGTTGGCTACGCGCTGTGCGC CATCGTCATCGTCACCATCTTTGTCGGCCTCTTCTTTTACCTCGGACGCCAAGGTTTACGGGAGAAGCACCAGCG GCTGGCGGCGGCGGGCGGCCCACACGGCGCCGCGCCTACGGGCTACCAGCCGCAGCCATGGCGAGAAGACAACCC CGACGGCAGTCCGAGAGAGGCGCCGCCGAGCTACGACGCCTCTTCTTCGCAGCACATCGGTCTTCAGCCAGTCTC GGCGCAGCCTTCGCCCTGGCGCAGCTCCGACGTCAAGGACGGTGGGGACGACCAGCCGGCGCTGGGCGGGGCGCA ACATCCGAGGGAGTTTGCTTGA |