Protein ID | Ophio5|5398 |
Gene name | |
Location | scaffold_44:46657..49606 |
Strand | - |
Gene length (bp) | 2949 |
Transcript length (bp) | 2949 |
Coding sequence length (bp) | 2946 |
Protein length (aa) | 982 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02194 | PXA | PXA domain | 1.1E-32 | 150 | 326 |
PF08628 | Nexin_C | Sorting nexin C terminal | 1.4E-20 | 846 | 962 |
PF00787 | PX | PX domain | 3.1E-05 | 505 | 580 |
GO Term | Description | Terminal node |
---|---|---|
GO:0035091 | phosphatidylinositol binding | Yes |
GO:0005488 | binding | No |
GO:0005543 | phospholipid binding | No |
GO:0003674 | molecular_function | No |
GO:0008289 | lipid binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 61 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 47 | 69 | 22 |
2 | 74 | 96 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|5398 MASPDAAVGHARPAAAPDPPSRLEMDSLGPSKHDPKPTSQPGLSAKALHFISVASPGTLAGIAVAFSGVTYAILG RLGLLVIGAVGGVIAFASLEAKQPDVARAVRGEKGPDVVDRLWRDLQNTGLSSALDAAADNDDDLPLKAFDDFRP ETRDALSGFVDSIIRDYVKWWYNPLVPTDHSFPLACRKVLNGYLMAVSNRMSRKRPADAFLDLLTNCSSIIIVFM SELAAAYADLPPDTNMNAADAIYNYLASNPDSRLASLLNQRQQAAKFKMVAEDLLVFLEQAPQSCDPARVFLREI LANSVLETTLQSCSKAEWINGWIVSLLEAGEPDLNQAIDVGMQTGDDAGISNVFADLDGNVGNIGIAKPGRSSPE TERSRRKDSCVQGNGKSPHRGASRDESLARGEAESTTTPSRWSLTGSSRDSPSPPNRTSGQQFTSFDQIVAHGSG QALEHEAPKKEPPHLHNASFTLHDDTTGDGGKIRNKPGWDYLIQVEPSMAVYPGWMIVRRYSDFETLHEILRRIA TVSGATAFTELHRELPGWKMHTRESLRGELERYLRDACWYASLAESEGMKRFLEKSQGHTHGGSKSFGWETVGKN MLDALTIGPKGAVEGGKNLVGVFGLGRKPTNPLSMADAASSGAAGRLSRSNHSPAAKSPARSERASTDSQRSSVI STQPGKVAPMDRRASHQLDGDVDYTRVSRLDRTDSTSAGSTSAHPSREHSRASSLAPLQSPSMSSIDMMKLPPPP DEIEDDYMGLADSGAAGDGSPAQHDRRRSSGPVSGPTASPNTNGAKKAAAAVTAAAASSAARPARQYSPLSEHET RVAVELLFAVINEMYTLSSAWNIRRTLLTAAKSFLLRPGNPSLLTVQSLIQTSVLDANTSDAGIAATIRKLRESS VPTEEERAAWPAELTADEKEKLAVKARRMLVQRGVPAALMGVMGQGATGDALGRVFDCLQIEEVARGLVFGLMLQ IVRILTH |
Coding | >Ophio5|5398 ATGGCCTCTCCCGATGCAGCGGTCGGCCATGCGCGGCCCGCAGCTGCCCCTGATCCGCCCTCTCGCCTTGAAATG GACTCCCTTGGGCCTTCAAAGCACGACCCGAAGCCCACCTCGCAGCCGGGCCTGAGCGCAAAAGCCCTTCACTTC ATCTCCGTTGCCTCTCCAGGCACCCTCGCTGGCATCGCAGTCGCCTTCTCTGGCGTCACCTACGCCATCCTCGGC CGGCTTGGCCTGCTGGTCATCGGAGCCGTTGGAGGCGTCATCGCCTTTGCCTCTCTTGAGGCCAAGCAACCGGAC GTGGCCAGAGCTGTACGCGGTGAAAAGGGCCCCGACGTCGTCGACCGGCTGTGGCGCGACCTGCAAAACACCGGG CTGTCTTCGGCTCTCGATGCTGCTGCCGACAATGACGACGACCTGCCGCTCAAGGCCTTCGACGACTTCCGTCCG GAGACGCGAGATGCCCTCTCTGGCTTCGTCGACTCCATCATCCGCGACTACGTCAAGTGGTGGTACAACCCACTC GTGCCCACAGACCACTCCTTTCCCCTCGCCTGCCGCAAGGTGCTTAATGGCTACCTCATGGCCGTCTCCAACCGC ATGTCTCGCAAACGGCCCGCCGACGCCTTCCTCGACCTTCTCACCAACTGCTCGTCCATCATCATCGTCTTCATG TCCGAGCTCGCGGCCGCCTACGCCGACCTCCCGCCCGACACCAACATGAATGCCGCCGACGCCATCTACAACTAC TTGGCGTCCAATCCCGACTCGCGTCTTGCCAGCCTCCTCAATCAGCGCCAGCAGGCCGCCAAGTTCAAGATGGTG GCCGAGGACCTGCTCGTGTTCCTCGAGCAGGCGCCCCAGAGCTGCGACCCCGCCCGCGTCTTCCTCCGAGAGATC CTGGCCAACTCTGTGCTCGAGACGACGCTGCAGTCGTGCAGCAAGGCAGAGTGGATCAACGGCTGGATCGTCTCC CTCCTCGAAGCCGGCGAGCCCGACCTCAACCAGGCCATCGACGTCGGCATGCAGACGGGCGACGACGCCGGCATC TCCAATGTCTTCGCCGACCTCGACGGCAACGTCGGTAACATTGGCATCGCCAAACCGGGTCGGTCGAGTCCGGAG ACGGAACGCAGCCGGCGAAAAGACTCGTGTGTCCAGGGGAACGGCAAGAGTCCGCATCGAGGCGCGTCGCGCGAC GAGTCTCTGGCCCGCGGCGAGGCCGAAAGCACGACGACGCCGTCTCGGTGGTCCCTGACCGGCTCGAGCCGGGAT TCGCCCTCTCCTCCCAACAGGACCAGCGGACAACAGTTTACCAGCTTCGATCAGATCGTCGCTCACGGCTCGGGC CAGGCGCTGGAGCACGAAGCGCCCAAGAAGGAGCCCCCGCACCTCCACAACGCGTCTTTTACGTTACACGACGAC ACGACTGGCGACGGCGGCAAGATACGCAACAAGCCCGGATGGGACTATCTGATCCAGGTAGAGCCGTCGATGGCT GTATACCCGGGATGGATGATTGTGAGGCGGTACTCGGACTTTGAGACGCTGCATGAGATCCTGCGGCGCATCGCC ACCGTTTCGGGCGCAACGGCCTTTACCGAGCTGCACAGGGAGCTGCCCGGCTGGAAGATGCACACGCGAGAGTCG CTCCGGGGGGAGCTGGAGCGGTACTTGCGAGACGCGTGCTGGTACGCGTCGCTGGCCGAGAGCGAGGGCATGAAG CGCTTTCTGGAGAAGTCGCAGGGTCACACTCACGGGGGCTCCAAGTCTTTTGGCTGGGAGACGGTCGGCAAGAAT ATGCTGGACGCGCTGACGATTGGGCCCAAGGGGGCCGTCGAGGGCGGCAAGAACCTGGTCGGCGTCTTCGGCCTG GGCCGCAAGCCGACCAACCCGCTGTCGATGGCGGATGCCGCAAGCTCAGGGGCGGCCGGCCGGCTCTCGAGATCC AACCACTCGCCCGCGGCCAAGTCTCCGGCGCGGTCGGAGCGGGCCAGCACCGACAGTCAGCGGTCTTCGGTCATC TCGACGCAGCCCGGCAAGGTGGCGCCCATGGACAGGCGGGCGAGCCACCAACTAGATGGCGATGTCGACTATACC CGCGTCAGCCGCTTGGACCGCACCGATTCCACCTCGGCCGGCTCAACCAGCGCACACCCTAGCAGGGAGCACAGT CGGGCGTCGAGCCTGGCGCCGCTGCAGTCGCCGTCCATGTCGAGCATCGACATGATGAAGCTGCCGCCGCCGCCG GACGAGATAGAGGATGACTACATGGGCCTGGCCGACAGCGGAGCAGCAGGCGACGGCTCGCCGGCTCAGCACGAC AGGAGGCGGAGCAGTGGGCCGGTCAGCGGCCCGACAGCGTCGCCCAACACCAATGGCGCCAAGAAGGCGGCTGCG GCCGTGACGGCTGCGGCGGCCTCTTCGGCAGCGCGGCCTGCGCGGCAATACTCGCCGCTGTCGGAACACGAGACG CGGGTAGCGGTCGAGCTTCTCTTCGCCGTCATCAACGAGATGTACACGCTCTCGTCGGCGTGGAATATCCGACGC ACTCTCCTCACAGCAGCAAAGTCATTCCTGCTGAGGCCAGGCAACCCGTCCCTTCTGACGGTGCAGTCACTGATC CAGACGTCGGTGCTCGACGCCAACACCTCGGACGCCGGCATCGCCGCCACCATCCGCAAGCTACGGGAGAGCAGC GTGCCGACGGAAGAGGAGCGCGCCGCCTGGCCGGCCGAGCTGACGGCGGACGAGAAGGAGAAGCTGGCGGTCAAG GCTCGGCGCATGCTCGTCCAGCGCGGCGTCCCGGCGGCGCTCATGGGCGTCATGGGACAGGGGGCGACGGGGGAT GCGCTGGGGAGGGTGTTTGACTGTCTACAGATTGAGGAGGTGGCGCGGGGGCTGGTGTTTGGCCTGATGCTGCAG ATTGTTCGGATACTGACGCAT |
Transcript | >Ophio5|5398 ATGGCCTCTCCCGATGCAGCGGTCGGCCATGCGCGGCCCGCAGCTGCCCCTGATCCGCCCTCTCGCCTTGAAATG GACTCCCTTGGGCCTTCAAAGCACGACCCGAAGCCCACCTCGCAGCCGGGCCTGAGCGCAAAAGCCCTTCACTTC ATCTCCGTTGCCTCTCCAGGCACCCTCGCTGGCATCGCAGTCGCCTTCTCTGGCGTCACCTACGCCATCCTCGGC CGGCTTGGCCTGCTGGTCATCGGAGCCGTTGGAGGCGTCATCGCCTTTGCCTCTCTTGAGGCCAAGCAACCGGAC GTGGCCAGAGCTGTACGCGGTGAAAAGGGCCCCGACGTCGTCGACCGGCTGTGGCGCGACCTGCAAAACACCGGG CTGTCTTCGGCTCTCGATGCTGCTGCCGACAATGACGACGACCTGCCGCTCAAGGCCTTCGACGACTTCCGTCCG GAGACGCGAGATGCCCTCTCTGGCTTCGTCGACTCCATCATCCGCGACTACGTCAAGTGGTGGTACAACCCACTC GTGCCCACAGACCACTCCTTTCCCCTCGCCTGCCGCAAGGTGCTTAATGGCTACCTCATGGCCGTCTCCAACCGC ATGTCTCGCAAACGGCCCGCCGACGCCTTCCTCGACCTTCTCACCAACTGCTCGTCCATCATCATCGTCTTCATG TCCGAGCTCGCGGCCGCCTACGCCGACCTCCCGCCCGACACCAACATGAATGCCGCCGACGCCATCTACAACTAC TTGGCGTCCAATCCCGACTCGCGTCTTGCCAGCCTCCTCAATCAGCGCCAGCAGGCCGCCAAGTTCAAGATGGTG GCCGAGGACCTGCTCGTGTTCCTCGAGCAGGCGCCCCAGAGCTGCGACCCCGCCCGCGTCTTCCTCCGAGAGATC CTGGCCAACTCTGTGCTCGAGACGACGCTGCAGTCGTGCAGCAAGGCAGAGTGGATCAACGGCTGGATCGTCTCC CTCCTCGAAGCCGGCGAGCCCGACCTCAACCAGGCCATCGACGTCGGCATGCAGACGGGCGACGACGCCGGCATC TCCAATGTCTTCGCCGACCTCGACGGCAACGTCGGTAACATTGGCATCGCCAAACCGGGTCGGTCGAGTCCGGAG ACGGAACGCAGCCGGCGAAAAGACTCGTGTGTCCAGGGGAACGGCAAGAGTCCGCATCGAGGCGCGTCGCGCGAC GAGTCTCTGGCCCGCGGCGAGGCCGAAAGCACGACGACGCCGTCTCGGTGGTCCCTGACCGGCTCGAGCCGGGAT TCGCCCTCTCCTCCCAACAGGACCAGCGGACAACAGTTTACCAGCTTCGATCAGATCGTCGCTCACGGCTCGGGC CAGGCGCTGGAGCACGAAGCGCCCAAGAAGGAGCCCCCGCACCTCCACAACGCGTCTTTTACGTTACACGACGAC ACGACTGGCGACGGCGGCAAGATACGCAACAAGCCCGGATGGGACTATCTGATCCAGGTAGAGCCGTCGATGGCT GTATACCCGGGATGGATGATTGTGAGGCGGTACTCGGACTTTGAGACGCTGCATGAGATCCTGCGGCGCATCGCC ACCGTTTCGGGCGCAACGGCCTTTACCGAGCTGCACAGGGAGCTGCCCGGCTGGAAGATGCACACGCGAGAGTCG CTCCGGGGGGAGCTGGAGCGGTACTTGCGAGACGCGTGCTGGTACGCGTCGCTGGCCGAGAGCGAGGGCATGAAG CGCTTTCTGGAGAAGTCGCAGGGTCACACTCACGGGGGCTCCAAGTCTTTTGGCTGGGAGACGGTCGGCAAGAAT ATGCTGGACGCGCTGACGATTGGGCCCAAGGGGGCCGTCGAGGGCGGCAAGAACCTGGTCGGCGTCTTCGGCCTG GGCCGCAAGCCGACCAACCCGCTGTCGATGGCGGATGCCGCAAGCTCAGGGGCGGCCGGCCGGCTCTCGAGATCC AACCACTCGCCCGCGGCCAAGTCTCCGGCGCGGTCGGAGCGGGCCAGCACCGACAGTCAGCGGTCTTCGGTCATC TCGACGCAGCCCGGCAAGGTGGCGCCCATGGACAGGCGGGCGAGCCACCAACTAGATGGCGATGTCGACTATACC CGCGTCAGCCGCTTGGACCGCACCGATTCCACCTCGGCCGGCTCAACCAGCGCACACCCTAGCAGGGAGCACAGT CGGGCGTCGAGCCTGGCGCCGCTGCAGTCGCCGTCCATGTCGAGCATCGACATGATGAAGCTGCCGCCGCCGCCG GACGAGATAGAGGATGACTACATGGGCCTGGCCGACAGCGGAGCAGCAGGCGACGGCTCGCCGGCTCAGCACGAC AGGAGGCGGAGCAGTGGGCCGGTCAGCGGCCCGACAGCGTCGCCCAACACCAATGGCGCCAAGAAGGCGGCTGCG GCCGTGACGGCTGCGGCGGCCTCTTCGGCAGCGCGGCCTGCGCGGCAATACTCGCCGCTGTCGGAACACGAGACG CGGGTAGCGGTCGAGCTTCTCTTCGCCGTCATCAACGAGATGTACACGCTCTCGTCGGCGTGGAATATCCGACGC ACTCTCCTCACAGCAGCAAAGTCATTCCTGCTGAGGCCAGGCAACCCGTCCCTTCTGACGGTGCAGTCACTGATC CAGACGTCGGTGCTCGACGCCAACACCTCGGACGCCGGCATCGCCGCCACCATCCGCAAGCTACGGGAGAGCAGC GTGCCGACGGAAGAGGAGCGCGCCGCCTGGCCGGCCGAGCTGACGGCGGACGAGAAGGAGAAGCTGGCGGTCAAG GCTCGGCGCATGCTCGTCCAGCGCGGCGTCCCGGCGGCGCTCATGGGCGTCATGGGACAGGGGGCGACGGGGGAT GCGCTGGGGAGGGTGTTTGACTGTCTACAGATTGAGGAGGTGGCGCGGGGGCTGGTGTTTGGCCTGATGCTGCAG ATTGTTCGGATACTGACGCATTAA |
Gene | >Ophio5|5398 ATGGCCTCTCCCGATGCAGCGGTCGGCCATGCGCGGCCCGCAGCTGCCCCTGATCCGCCCTCTCGCCTTGAAATG GACTCCCTTGGGCCTTCAAAGCACGACCCGAAGCCCACCTCGCAGCCGGGCCTGAGCGCAAAAGCCCTTCACTTC ATCTCCGTTGCCTCTCCAGGCACCCTCGCTGGCATCGCAGTCGCCTTCTCTGGCGTCACCTACGCCATCCTCGGC CGGCTTGGCCTGCTGGTCATCGGAGCCGTTGGAGGCGTCATCGCCTTTGCCTCTCTTGAGGCCAAGCAACCGGAC GTGGCCAGAGCTGTACGCGGTGAAAAGGGCCCCGACGTCGTCGACCGGCTGTGGCGCGACCTGCAAAACACCGGG CTGTCTTCGGCTCTCGATGCTGCTGCCGACAATGACGACGACCTGCCGCTCAAGGCCTTCGACGACTTCCGTCCG GAGACGCGAGATGCCCTCTCTGGCTTCGTCGACTCCATCATCCGCGACTACGTCAAGTGGTGGTACAACCCACTC GTGCCCACAGACCACTCCTTTCCCCTCGCCTGCCGCAAGGTGCTTAATGGCTACCTCATGGCCGTCTCCAACCGC ATGTCTCGCAAACGGCCCGCCGACGCCTTCCTCGACCTTCTCACCAACTGCTCGTCCATCATCATCGTCTTCATG TCCGAGCTCGCGGCCGCCTACGCCGACCTCCCGCCCGACACCAACATGAATGCCGCCGACGCCATCTACAACTAC TTGGCGTCCAATCCCGACTCGCGTCTTGCCAGCCTCCTCAATCAGCGCCAGCAGGCCGCCAAGTTCAAGATGGTG GCCGAGGACCTGCTCGTGTTCCTCGAGCAGGCGCCCCAGAGCTGCGACCCCGCCCGCGTCTTCCTCCGAGAGATC CTGGCCAACTCTGTGCTCGAGACGACGCTGCAGTCGTGCAGCAAGGCAGAGTGGATCAACGGCTGGATCGTCTCC CTCCTCGAAGCCGGCGAGCCCGACCTCAACCAGGCCATCGACGTCGGCATGCAGACGGGCGACGACGCCGGCATC TCCAATGTCTTCGCCGACCTCGACGGCAACGTCGGTAACATTGGCATCGCCAAACCGGGTCGGTCGAGTCCGGAG ACGGAACGCAGCCGGCGAAAAGACTCGTGTGTCCAGGGGAACGGCAAGAGTCCGCATCGAGGCGCGTCGCGCGAC GAGTCTCTGGCCCGCGGCGAGGCCGAAAGCACGACGACGCCGTCTCGGTGGTCCCTGACCGGCTCGAGCCGGGAT TCGCCCTCTCCTCCCAACAGGACCAGCGGACAACAGTTTACCAGCTTCGATCAGATCGTCGCTCACGGCTCGGGC CAGGCGCTGGAGCACGAAGCGCCCAAGAAGGAGCCCCCGCACCTCCACAACGCGTCTTTTACGTTACACGACGAC ACGACTGGCGACGGCGGCAAGATACGCAACAAGCCCGGATGGGACTATCTGATCCAGGTAGAGCCGTCGATGGCT GTATACCCGGGATGGATGATTGTGAGGCGGTACTCGGACTTTGAGACGCTGCATGAGATCCTGCGGCGCATCGCC ACCGTTTCGGGCGCAACGGCCTTTACCGAGCTGCACAGGGAGCTGCCCGGCTGGAAGATGCACACGCGAGAGTCG CTCCGGGGGGAGCTGGAGCGGTACTTGCGAGACGCGTGCTGGTACGCGTCGCTGGCCGAGAGCGAGGGCATGAAG CGCTTTCTGGAGAAGTCGCAGGGTCACACTCACGGGGGCTCCAAGTCTTTTGGCTGGGAGACGGTCGGCAAGAAT ATGCTGGACGCGCTGACGATTGGGCCCAAGGGGGCCGTCGAGGGCGGCAAGAACCTGGTCGGCGTCTTCGGCCTG GGCCGCAAGCCGACCAACCCGCTGTCGATGGCGGATGCCGCAAGCTCAGGGGCGGCCGGCCGGCTCTCGAGATCC AACCACTCGCCCGCGGCCAAGTCTCCGGCGCGGTCGGAGCGGGCCAGCACCGACAGTCAGCGGTCTTCGGTCATC TCGACGCAGCCCGGCAAGGTGGCGCCCATGGACAGGCGGGCGAGCCACCAACTAGATGGCGATGTCGACTATACC CGCGTCAGCCGCTTGGACCGCACCGATTCCACCTCGGCCGGCTCAACCAGCGCACACCCTAGCAGGGAGCACAGT CGGGCGTCGAGCCTGGCGCCGCTGCAGTCGCCGTCCATGTCGAGCATCGACATGATGAAGCTGCCGCCGCCGCCG GACGAGATAGAGGATGACTACATGGGCCTGGCCGACAGCGGAGCAGCAGGCGACGGCTCGCCGGCTCAGCACGAC AGGAGGCGGAGCAGTGGGCCGGTCAGCGGCCCGACAGCGTCGCCCAACACCAATGGCGCCAAGAAGGCGGCTGCG GCCGTGACGGCTGCGGCGGCCTCTTCGGCAGCGCGGCCTGCGCGGCAATACTCGCCGCTGTCGGAACACGAGACG CGGGTAGCGGTCGAGCTTCTCTTCGCCGTCATCAACGAGATGTACACGCTCTCGTCGGCGTGGAATATCCGACGC ACTCTCCTCACAGCAGCAAAGTCATTCCTGCTGAGGCCAGGCAACCCGTCCCTTCTGACGGTGCAGTCACTGATC CAGACGTCGGTGCTCGACGCCAACACCTCGGACGCCGGCATCGCCGCCACCATCCGCAAGCTACGGGAGAGCAGC GTGCCGACGGAAGAGGAGCGCGCCGCCTGGCCGGCCGAGCTGACGGCGGACGAGAAGGAGAAGCTGGCGGTCAAG GCTCGGCGCATGCTCGTCCAGCGCGGCGTCCCGGCGGCGCTCATGGGCGTCATGGGACAGGGGGCGACGGGGGAT GCGCTGGGGAGGGTGTTTGACTGTCTACAGATTGAGGAGGTGGCGCGGGGGCTGGTGTTTGGCCTGATGCTGCAG ATTGTTCGGATACTGACGCATTAA |