Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5376
Gene name
Locationscaffold_439:2859..5193
Strand-
Gene length (bp)2334
Transcript length (bp)2115
Coding sequence length (bp)2112
Protein length (aa) 704

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04152 Mre11_DNA_bind Mre11 DNA-binding presumed domain 3.4E-55 269 443
PF00149 Metallophos Calcineurin-like phosphoesterase 1.4E-13 10 224

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 5 534 0.0E+00
sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 2 477 6.0E-167
sp|P32829|MRE11_YEAST Double-strand break repair protein MRE11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1 SV=2 6 659 5.0E-151
sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 8 467 8.0E-125
sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 4 605 2.0E-122
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Swissprot ID Swissprot Description Start End E-value
sp|Q9C291|MRE11_NEUCR Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 5 534 0.0E+00
sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 2 477 6.0E-167
sp|P32829|MRE11_YEAST Double-strand break repair protein MRE11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1 SV=2 6 659 5.0E-151
sp|Q9UVN9|MRE11_COPC7 Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 8 467 8.0E-125
sp|Q60HE6|MRE11_MACFA Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 4 605 2.0E-122
sp|P49959|MRE11_HUMAN Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A PE=1 SV=3 4 605 8.0E-122
sp|Q61216|MRE11_MOUSE Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a PE=1 SV=1 4 605 5.0E-120
sp|Q9W6K1|MRE11_XENLA Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11 PE=2 SV=1 4 519 5.0E-120
sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus GN=Mre11a PE=1 SV=1 4 605 6.0E-120
sp|Q9XGM2|MRE11_ARATH Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=1 SV=1 1 660 4.0E-113
sp|Q9IAM7|MRE11_CHICK Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11 PE=2 SV=1 8 460 8.0E-112
sp|Q7XQR9|MRE11_ORYSJ Double-strand break repair protein MRE11 OS=Oryza sativa subsp. japonica GN=MRE11 PE=1 SV=2 6 544 7.0E-109
sp|Q25AA3|MRE11_ORYSI Double-strand break repair protein MRE11 OS=Oryza sativa subsp. indica GN=H0410G08.11 PE=3 SV=1 6 544 7.0E-109
sp|Q23255|MRE11_CAEEL Double-strand break repair protein mre-11 OS=Caenorhabditis elegans GN=mre-11 PE=1 SV=2 8 445 2.0E-85
sp|Q8SRV0|MRE11_ENCCU Double-strand break repair protein MRE11 OS=Encephalitozoon cuniculi (strain GB-M1) GN=MRE11 PE=3 SV=1 10 482 1.0E-62
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0006302 double-strand break repair Yes
GO:0030145 manganese ion binding Yes
GO:0016787 hydrolase activity Yes
GO:0004519 endonuclease activity Yes
GO:0090304 nucleic acid metabolic process No
GO:0044237 cellular metabolic process No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0008152 metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0043226 organelle No
GO:0046872 metal ion binding No
GO:0046483 heterocycle metabolic process No
GO:0071704 organic substance metabolic process No
GO:0004518 nuclease activity No
GO:0044238 primary metabolic process No
GO:0006259 DNA metabolic process No
GO:0050896 response to stimulus No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:1901360 organic cyclic compound metabolic process No
GO:0016788 hydrolase activity, acting on ester bonds No
GO:0005575 cellular_component No
GO:0006950 response to stress No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006974 cellular response to DNA damage stimulus No
GO:0003824 catalytic activity No
GO:0006281 DNA repair No
GO:0006807 nitrogen compound metabolic process No
GO:0046914 transition metal ion binding No
GO:0051716 cellular response to stimulus No
GO:0043227 membrane-bounded organelle No
GO:0003674 molecular_function No
GO:0043229 intracellular organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0009987 cellular process No
GO:0043170 macromolecule metabolic process No
GO:0005488 binding No
GO:0110165 cellular anatomical entity No
GO:0033554 cellular response to stress No
GO:0044260 cellular macromolecule metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5376
MSELTEADTIRILVATDNHVGFEERDAIRKDDSWRTFDEIMNIGRTENVDMVLLAGDLFHDNKPSRKSLYQVLRA
LRKNCLGMKPCPLEFLSDAAEVFEGAFTHVNYEDPDINVSIPVFSIHGNHDDPSGDGNLCSLDLLQASGLLNYFG
RVAEADNIEAKPILLQKGLTKLALFGLSNVRDERMFRTFRDHKNHHAHTATSYLPENVLPDWLDLVIWGHEHECL
IEPTKNPETGFHVMQPGSSVATSLVPGEAVPKHVAIVSITGKDFRVDKIPLQTVRPFVTRDLVLAQDKRFKGLDK
KKDNRQEVTRRLMEVVDEMIEEANTDWEAVQTGGSVLEERPLPLIRLKVEYSAQEGCHFECENPQRFSNRFVGKV
ANTNDVVYFYRKKTSSKKATAATPAEALEALADGSDMVKVESLVRDFLSAQSLKVLPQGPFGDAVNQFVAKDDKH
AMELFVSEHLTGQVKQLLGLESDDEDLNSAMEIYRKRIEQQLASGATRQITERTRTLRPKPDTWDSDFDGNWEDE
PDAWTFEDVTMNSNSNSVSQHKGRPTREKSGKERMADAEEGDGPAPRTGTRTRGGKPTTTRKATTKKTALTRGRG
RQVVDESEDGGQEDIIMESDGDPPPVKAVAKTRQGQAAKARASKRPTATTRGAAKTRQTTLEFSQKGPTQDQALH
VSDDEISDDDDAFEPAPATTRTRAKTRRG
Coding >Ophio5|5376
ATGAGCGAACTCACTGAGGCGGATACGATCCGCATACTCGTCGCGACGGACAACCACGTCGGCTTCGAGGAGCGC
GATGCCATCCGGAAAGACGACAGCTGGCGCACGTTTGACGAGATTATGAATATAGGTCGGACAGAAAACGTTGAC
ATGGTTCTGCTCGCGGGCGATCTGTTCCACGACAACAAGCCCTCTCGCAAGTCGCTGTACCAGGTTTTGCGGGCC
CTGCGCAAGAATTGCCTTGGAATGAAGCCCTGCCCTCTCGAATTTCTCTCGGATGCCGCCGAAGTCTTTGAAGGC
GCTTTCACCCATGTCAACTATGAAGACCCCGATATCAACGTCTCGATTCCCGTCTTCTCTATTCACGGAAACCAC
GACGATCCCTCGGGTGACGGCAACTTGTGTTCTCTCGATCTGTTGCAGGCTAGCGGACTGCTAAACTACTTTGGC
CGCGTGGCCGAGGCCGACAACATCGAGGCCAAGCCCATCCTGCTTCAGAAGGGCCTCACAAAGCTGGCTCTATTC
GGACTCAGCAACGTCCGCGACGAGCGCATGTTTCGCACCTTTAGGGACCACAAGAACCACCATGCGCACACTGCC
ACGTCGTACCTGCCGGAGAACGTGCTTCCAGACTGGCTCGATCTCGTTATCTGGGGTCATGAGCACGAGTGCCTT
ATCGAGCCGACGAAGAACCCAGAAACTGGTTTTCACGTCATGCAGCCCGGCTCATCCGTTGCCACCTCGTTGGTG
CCGGGAGAGGCTGTTCCAAAGCACGTGGCCATCGTCAGCATCACGGGAAAGGACTTTAGAGTCGACAAGATCCCA
CTCCAGACGGTCCGGCCGTTCGTCACCCGGGATCTGGTGCTGGCCCAGGACAAGCGGTTCAAGGGGCTGGACAAG
AAGAAGGACAACAGGCAGGAGGTCACGCGGCGATTGATGGAAGTCGTTGACGAGATGATCGAAGAAGCAAACACC
GACTGGGAAGCAGTCCAGACAGGCGGTTCCGTGCTCGAGGAGCGTCCGCTGCCTCTCATCCGCCTCAAGGTGGAA
TACAGCGCTCAGGAGGGCTGCCATTTCGAATGCGAAAACCCCCAGCGCTTCTCCAATCGATTCGTTGGCAAGGTG
GCCAACACAAACGACGTGGTGTACTTTTATCGGAAGAAGACTTCGAGTAAAAAAGCTACGGCCGCCACACCGGCA
GAAGCCCTGGAAGCCCTCGCTGACGGCAGCGACATGGTTAAGGTTGAGTCGCTTGTCCGAGACTTTTTGTCGGCC
CAGTCGCTCAAGGTGCTACCGCAAGGACCCTTTGGCGACGCTGTCAACCAATTCGTCGCCAAAGACGACAAGCAC
GCCATGGAGCTGTTCGTCTCGGAGCATCTTACTGGCCAGGTGAAGCAGCTTTTAGGTCTGGAATCAGACGATGAG
GATCTGAACAGCGCCATGGAAATCTACCGCAAGAGGATTGAGCAGCAACTGGCGAGCGGAGCCACAAGGCAGATA
ACGGAGAGGACACGCACGTTGAGGCCCAAGCCGGACACCTGGGATAGCGACTTTGACGGGAACTGGGAGGACGAG
CCTGATGCGTGGACATTTGAAGACGTGACAATGAATTCCAACTCCAACTCTGTGTCACAACACAAAGGAAGGCCA
ACGCGGGAGAAATCCGGCAAAGAAAGGATGGCAGACGCAGAAGAAGGGGATGGGCCGGCCCCAAGGACTGGAACG
AGGACACGGGGAGGCAAGCCGACTACGACGAGGAAAGCAACCACAAAGAAGACGGCTTTGACCCGAGGTCGTGGA
CGCCAAGTCGTCGATGAGAGCGAAGACGGGGGGCAGGAGGACATCATCATGGAGTCGGACGGGGATCCGCCTCCA
GTAAAGGCCGTGGCCAAGACAAGGCAAGGTCAAGCTGCCAAAGCAAGGGCGTCGAAGCGACCGACGGCGACGACA
CGAGGCGCAGCCAAGACGCGACAGACGACACTCGAATTCTCGCAGAAGGGACCGACGCAGGACCAGGCGCTACAT
GTGAGCGACGACGAGATTTCTGACGACGACGACGCGTTTGAGCCGGCACCAGCGACGACAAGGACAAGGGCAAAG
ACAAGGAGAGGG
Transcript >Ophio5|5376
ATGAGCGAACTCACTGAGGCGGATACGATCCGCATACTCGTCGCGACGGACAACCACGTCGGCTTCGAGGAGCGC
GATGCCATCCGGAAAGACGACAGCTGGCGCACGTTTGACGAGATTATGAATATAGGTCGGACAGAAAACGTTGAC
ATGGTTCTGCTCGCGGGCGATCTGTTCCACGACAACAAGCCCTCTCGCAAGTCGCTGTACCAGGTTTTGCGGGCC
CTGCGCAAGAATTGCCTTGGAATGAAGCCCTGCCCTCTCGAATTTCTCTCGGATGCCGCCGAAGTCTTTGAAGGC
GCTTTCACCCATGTCAACTATGAAGACCCCGATATCAACGTCTCGATTCCCGTCTTCTCTATTCACGGAAACCAC
GACGATCCCTCGGGTGACGGCAACTTGTGTTCTCTCGATCTGTTGCAGGCTAGCGGACTGCTAAACTACTTTGGC
CGCGTGGCCGAGGCCGACAACATCGAGGCCAAGCCCATCCTGCTTCAGAAGGGCCTCACAAAGCTGGCTCTATTC
GGACTCAGCAACGTCCGCGACGAGCGCATGTTTCGCACCTTTAGGGACCACAAGAACCACCATGCGCACACTGCC
ACGTCGTACCTGCCGGAGAACGTGCTTCCAGACTGGCTCGATCTCGTTATCTGGGGTCATGAGCACGAGTGCCTT
ATCGAGCCGACGAAGAACCCAGAAACTGGTTTTCACGTCATGCAGCCCGGCTCATCCGTTGCCACCTCGTTGGTG
CCGGGAGAGGCTGTTCCAAAGCACGTGGCCATCGTCAGCATCACGGGAAAGGACTTTAGAGTCGACAAGATCCCA
CTCCAGACGGTCCGGCCGTTCGTCACCCGGGATCTGGTGCTGGCCCAGGACAAGCGGTTCAAGGGGCTGGACAAG
AAGAAGGACAACAGGCAGGAGGTCACGCGGCGATTGATGGAAGTCGTTGACGAGATGATCGAAGAAGCAAACACC
GACTGGGAAGCAGTCCAGACAGGCGGTTCCGTGCTCGAGGAGCGTCCGCTGCCTCTCATCCGCCTCAAGGTGGAA
TACAGCGCTCAGGAGGGCTGCCATTTCGAATGCGAAAACCCCCAGCGCTTCTCCAATCGATTCGTTGGCAAGGTG
GCCAACACAAACGACGTGGTGTACTTTTATCGGAAGAAGACTTCGAGTAAAAAAGCTACGGCCGCCACACCGGCA
GAAGCCCTGGAAGCCCTCGCTGACGGCAGCGACATGGTTAAGGTTGAGTCGCTTGTCCGAGACTTTTTGTCGGCC
CAGTCGCTCAAGGTGCTACCGCAAGGACCCTTTGGCGACGCTGTCAACCAATTCGTCGCCAAAGACGACAAGCAC
GCCATGGAGCTGTTCGTCTCGGAGCATCTTACTGGCCAGGTGAAGCAGCTTTTAGGTCTGGAATCAGACGATGAG
GATCTGAACAGCGCCATGGAAATCTACCGCAAGAGGATTGAGCAGCAACTGGCGAGCGGAGCCACAAGGCAGATA
ACGGAGAGGACACGCACGTTGAGGCCCAAGCCGGACACCTGGGATAGCGACTTTGACGGGAACTGGGAGGACGAG
CCTGATGCGTGGACATTTGAAGACGTGACAATGAATTCCAACTCCAACTCTGTGTCACAACACAAAGGAAGGCCA
ACGCGGGAGAAATCCGGCAAAGAAAGGATGGCAGACGCAGAAGAAGGGGATGGGCCGGCCCCAAGGACTGGAACG
AGGACACGGGGAGGCAAGCCGACTACGACGAGGAAAGCAACCACAAAGAAGACGGCTTTGACCCGAGGTCGTGGA
CGCCAAGTCGTCGATGAGAGCGAAGACGGGGGGCAGGAGGACATCATCATGGAGTCGGACGGGGATCCGCCTCCA
GTAAAGGCCGTGGCCAAGACAAGGCAAGGTCAAGCTGCCAAAGCAAGGGCGTCGAAGCGACCGACGGCGACGACA
CGAGGCGCAGCCAAGACGCGACAGACGACACTCGAATTCTCGCAGAAGGGACCGACGCAGGACCAGGCGCTACAT
GTGAGCGACGACGAGATTTCTGACGACGACGACGCGTTTGAGCCGGCACCAGCGACGACAAGGACAAGGGCAAAG
ACAAGGAGAGGGTGA
Gene >Ophio5|5376
ATGAGCGAACTCACTGGTATCCGCCATCCCTCCCACCATACTCTACCTCGCCCTGACCCATTTGCAGAGGCGGAT
ACGATCCGCATACTCGTCGCGACGGACAACCACGTCGGCTTCGAGGAGCGCGATGCCATCCGGAAAGACGACAGC
TGGCGCACGTTTGACGAGATTATGAATATAGGTCGGACAGAAAACGCAAGTCATCATCCATTCACTCTAATATCC
CCCCGACTGACGGTGGTCACCAGGTTGACATGGTTCTGCTCGCGGGCGATCTGTTCCACGACAACAAGCCCTCTC
GCAAGTCGCTGTACCAGGTTTTGCGGGCCCTGCGCAAGAATTGCCTTGGAATGAAGCCCTGCCCTCTCGAATTTC
TCTCGGATGCCGCCGAAGTCTTTGAAGGCGCTTTCACCCATGTCAACTATGAAGACCCCGATATCAACGTCTCGA
TTCCCGTCTTCTCTATTCACGGAAACCACGACGATCCCTCGGGTGACGGCAACTTGTGTTCTCTCGATCTGTTGC
AGGCTAGCGGACTGCTAAACTACTTTGGCCGCGTGGCCGAGGCCGACAACATCGAGGCCAAGCCCATCCTGCTTC
AGAAGGGCCTCACAAAGCTGGCTCTATTCGGACTCAGCAACGTCCGCGACGAGCGCATGTTTCGCACCTTTAGGG
ACCACAAGGTCAAGTGGTACCGTCCCAATGTGCAGATGGGCGGCTGGTTTAACCTGCTGGCCTTGCATCAGAACC
ACCATGCGCACACTGCCACGTCGTACCTGCCGGAGAACGTGCTTCCAGACTGGCTCGATCTCGTTATCTGGGGTC
ATGAGCACGAGTGCCTTATCGAGCCGACGAAGAACCCAGAAACTGGTTTTCACGTCATGCAGCCCGGCTCATCCG
TTGCCACCTCGTTGGTGCCGGGAGAGGCTGTTCCAAAGCACGTGGCCATCGTCAGCATCACGGGAAAGGACTTTA
GAGTCGACAAGATCCCACTCCAGACGGTCCGGCCGTTCGTCACCCGGGATCTGGTGCTGGCCCAGGACAAGCGGT
TCAAGGGGCTGGACAAGAAGAAGGACAACAGGCAGGAGGTCACGCGGCGATTGATGGAAGTCGTTGACGAGATGA
TCGAAGAAGCAAACACCGACTGGGAAGCAGTCCAGACAGGCGGTTCCGTGCTCGAGGAGCGTCCGCTGCCTCTCA
TCCGCCTCAAGGTGGAATACAGCGCTCAGGAGGGCTGCCATTTCGAATGCGAAAACCCCCAGCGCTTCTCCAATC
GATTCGTTGGCAAGGTGGCCAACACAAACGACGTGGTGTACTTTTATCGGAAGAAGACTTCGAGTAGTCAGTGCC
GGCCTTGCTTTGTTCCCTCCTCCTCATACTGACAGCGCCCCAGAAAAAGCTACGGCCGCCACACCGGCAGAAGCC
CTGGAAGCCCTCGCTGACGGCAGCGACATGGTTAAGGTTGAGTCGCTTGTCCGAGACTTTTTGTCGGCCCAGTCG
CTCAAGGTGCTACCGCAAGGACCCTTTGGCGACGCTGTCAACCAATTCGTCGCCAAAGACGACAAGCACGCCATG
GAGCTGTTCGTCTCGGAGCATCTTACTGGCCAGGTGAAGCAGCTTTTAGGTCTGGAATCAGACGATGAGGATCTG
AACAGCGCCATGGAAATCTACCGCAAGAGGATTGAGCAGCAACTGGCGAGCGGAGCCACAAGGCAGATAACGGAG
AGGACACGCACGTTGAGGCCCAAGCCGGACACCTGGGATAGCGACTTTGACGGGAACTGGGAGGACGAGCCTGAT
GCGTGGACATTTGAAGACGTGACAATGAATTCCAACTCCAACTCTGTGTCACAACACAAAGGAAGGCCAACGCGG
GAGAAATCCGGCAAAGAAAGGATGGCAGACGCAGAAGAAGGGGATGGGCCGGCCCCAAGGACTGGAACGAGGACA
CGGGGAGGCAAGCCGACTACGACGAGGAAAGCAACCACAAAGAAGACGGCTTTGACCCGAGGTCGTGGACGCCAA
GTCGTCGATGAGAGCGAAGACGGGGGGCAGGAGGACATCATCATGGAGTCGGACGGGGATCCGCCTCCAGTAAAG
GCCGTGGCCAAGACAAGGCAAGGTCAAGCTGCCAAAGCAAGGGCGTCGAAGCGACCGACGGCGACGACACGAGGC
GCAGCCAAGACGCGACAGACGACACTCGAATTCTCGCAGAAGGGACCGACGCAGGACCAGGCGCTACATGTGAGC
GACGACGAGATTTCTGACGACGACGACGCGTTTGAGCCGGCACCAGCGACGACAAGGACAAGGGCAAAGACAAGG
AGAGGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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