© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5376 |
| Gene name | |
| Location | scaffold_439:2859..5193 |
| Strand | - |
| Gene length (bp) | 2334 |
| Transcript length (bp) | 2115 |
| Coding sequence length (bp) | 2112 |
| Protein length (aa) | 704 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04152 | Mre11_DNA_bind | Mre11 DNA-binding presumed domain | 3.4E-55 | 269 | 443 |
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 1.4E-13 | 10 | 224 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C291|MRE11_NEUCR | Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 | 5 | 534 | 0.0E+00 |
| sp|Q09683|RAD32_SCHPO | DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 | 2 | 477 | 6.0E-167 |
| sp|P32829|MRE11_YEAST | Double-strand break repair protein MRE11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1 SV=2 | 6 | 659 | 5.0E-151 |
| sp|Q9UVN9|MRE11_COPC7 | Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 | 8 | 467 | 8.0E-125 |
| sp|Q60HE6|MRE11_MACFA | Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 | 4 | 605 | 2.0E-122 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9C291|MRE11_NEUCR | Double-strand break repair protein mus-23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mus-23 PE=3 SV=3 | 5 | 534 | 0.0E+00 |
| sp|Q09683|RAD32_SCHPO | DNA repair protein rad32 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad32 PE=1 SV=1 | 2 | 477 | 6.0E-167 |
| sp|P32829|MRE11_YEAST | Double-strand break repair protein MRE11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRE11 PE=1 SV=2 | 6 | 659 | 5.0E-151 |
| sp|Q9UVN9|MRE11_COPC7 | Double-strand break repair protein MRE11 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=MRE11 PE=3 SV=1 | 8 | 467 | 8.0E-125 |
| sp|Q60HE6|MRE11_MACFA | Double-strand break repair protein MRE11A OS=Macaca fascicularis GN=MRE11A PE=2 SV=1 | 4 | 605 | 2.0E-122 |
| sp|P49959|MRE11_HUMAN | Double-strand break repair protein MRE11A OS=Homo sapiens GN=MRE11A PE=1 SV=3 | 4 | 605 | 8.0E-122 |
| sp|Q61216|MRE11_MOUSE | Double-strand break repair protein MRE11A OS=Mus musculus GN=Mre11a PE=1 SV=1 | 4 | 605 | 5.0E-120 |
| sp|Q9W6K1|MRE11_XENLA | Double-strand break repair protein MRE11 OS=Xenopus laevis GN=mre11 PE=2 SV=1 | 4 | 519 | 5.0E-120 |
| sp|Q9JIM0|MRE11_RAT | Double-strand break repair protein MRE11A OS=Rattus norvegicus GN=Mre11a PE=1 SV=1 | 4 | 605 | 6.0E-120 |
| sp|Q9XGM2|MRE11_ARATH | Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=1 SV=1 | 1 | 660 | 4.0E-113 |
| sp|Q9IAM7|MRE11_CHICK | Double-strand break repair protein MRE11 OS=Gallus gallus GN=MRE11 PE=2 SV=1 | 8 | 460 | 8.0E-112 |
| sp|Q7XQR9|MRE11_ORYSJ | Double-strand break repair protein MRE11 OS=Oryza sativa subsp. japonica GN=MRE11 PE=1 SV=2 | 6 | 544 | 7.0E-109 |
| sp|Q25AA3|MRE11_ORYSI | Double-strand break repair protein MRE11 OS=Oryza sativa subsp. indica GN=H0410G08.11 PE=3 SV=1 | 6 | 544 | 7.0E-109 |
| sp|Q23255|MRE11_CAEEL | Double-strand break repair protein mre-11 OS=Caenorhabditis elegans GN=mre-11 PE=1 SV=2 | 8 | 445 | 2.0E-85 |
| sp|Q8SRV0|MRE11_ENCCU | Double-strand break repair protein MRE11 OS=Encephalitozoon cuniculi (strain GB-M1) GN=MRE11 PE=3 SV=1 | 10 | 482 | 1.0E-62 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0006302 | double-strand break repair | Yes |
| GO:0030145 | manganese ion binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0004519 | endonuclease activity | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0046872 | metal ion binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0004518 | nuclease activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0005575 | cellular_component | No |
| GO:0006950 | response to stress | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0003824 | catalytic activity | No |
| GO:0006281 | DNA repair | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0043229 | intracellular organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0009987 | cellular process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0005488 | binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0033554 | cellular response to stress | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5376 MSELTEADTIRILVATDNHVGFEERDAIRKDDSWRTFDEIMNIGRTENVDMVLLAGDLFHDNKPSRKSLYQVLRA LRKNCLGMKPCPLEFLSDAAEVFEGAFTHVNYEDPDINVSIPVFSIHGNHDDPSGDGNLCSLDLLQASGLLNYFG RVAEADNIEAKPILLQKGLTKLALFGLSNVRDERMFRTFRDHKNHHAHTATSYLPENVLPDWLDLVIWGHEHECL IEPTKNPETGFHVMQPGSSVATSLVPGEAVPKHVAIVSITGKDFRVDKIPLQTVRPFVTRDLVLAQDKRFKGLDK KKDNRQEVTRRLMEVVDEMIEEANTDWEAVQTGGSVLEERPLPLIRLKVEYSAQEGCHFECENPQRFSNRFVGKV ANTNDVVYFYRKKTSSKKATAATPAEALEALADGSDMVKVESLVRDFLSAQSLKVLPQGPFGDAVNQFVAKDDKH AMELFVSEHLTGQVKQLLGLESDDEDLNSAMEIYRKRIEQQLASGATRQITERTRTLRPKPDTWDSDFDGNWEDE PDAWTFEDVTMNSNSNSVSQHKGRPTREKSGKERMADAEEGDGPAPRTGTRTRGGKPTTTRKATTKKTALTRGRG RQVVDESEDGGQEDIIMESDGDPPPVKAVAKTRQGQAAKARASKRPTATTRGAAKTRQTTLEFSQKGPTQDQALH VSDDEISDDDDAFEPAPATTRTRAKTRRG |
| Coding | >Ophio5|5376 ATGAGCGAACTCACTGAGGCGGATACGATCCGCATACTCGTCGCGACGGACAACCACGTCGGCTTCGAGGAGCGC GATGCCATCCGGAAAGACGACAGCTGGCGCACGTTTGACGAGATTATGAATATAGGTCGGACAGAAAACGTTGAC ATGGTTCTGCTCGCGGGCGATCTGTTCCACGACAACAAGCCCTCTCGCAAGTCGCTGTACCAGGTTTTGCGGGCC CTGCGCAAGAATTGCCTTGGAATGAAGCCCTGCCCTCTCGAATTTCTCTCGGATGCCGCCGAAGTCTTTGAAGGC GCTTTCACCCATGTCAACTATGAAGACCCCGATATCAACGTCTCGATTCCCGTCTTCTCTATTCACGGAAACCAC GACGATCCCTCGGGTGACGGCAACTTGTGTTCTCTCGATCTGTTGCAGGCTAGCGGACTGCTAAACTACTTTGGC CGCGTGGCCGAGGCCGACAACATCGAGGCCAAGCCCATCCTGCTTCAGAAGGGCCTCACAAAGCTGGCTCTATTC GGACTCAGCAACGTCCGCGACGAGCGCATGTTTCGCACCTTTAGGGACCACAAGAACCACCATGCGCACACTGCC ACGTCGTACCTGCCGGAGAACGTGCTTCCAGACTGGCTCGATCTCGTTATCTGGGGTCATGAGCACGAGTGCCTT ATCGAGCCGACGAAGAACCCAGAAACTGGTTTTCACGTCATGCAGCCCGGCTCATCCGTTGCCACCTCGTTGGTG CCGGGAGAGGCTGTTCCAAAGCACGTGGCCATCGTCAGCATCACGGGAAAGGACTTTAGAGTCGACAAGATCCCA CTCCAGACGGTCCGGCCGTTCGTCACCCGGGATCTGGTGCTGGCCCAGGACAAGCGGTTCAAGGGGCTGGACAAG AAGAAGGACAACAGGCAGGAGGTCACGCGGCGATTGATGGAAGTCGTTGACGAGATGATCGAAGAAGCAAACACC GACTGGGAAGCAGTCCAGACAGGCGGTTCCGTGCTCGAGGAGCGTCCGCTGCCTCTCATCCGCCTCAAGGTGGAA TACAGCGCTCAGGAGGGCTGCCATTTCGAATGCGAAAACCCCCAGCGCTTCTCCAATCGATTCGTTGGCAAGGTG GCCAACACAAACGACGTGGTGTACTTTTATCGGAAGAAGACTTCGAGTAAAAAAGCTACGGCCGCCACACCGGCA GAAGCCCTGGAAGCCCTCGCTGACGGCAGCGACATGGTTAAGGTTGAGTCGCTTGTCCGAGACTTTTTGTCGGCC CAGTCGCTCAAGGTGCTACCGCAAGGACCCTTTGGCGACGCTGTCAACCAATTCGTCGCCAAAGACGACAAGCAC GCCATGGAGCTGTTCGTCTCGGAGCATCTTACTGGCCAGGTGAAGCAGCTTTTAGGTCTGGAATCAGACGATGAG GATCTGAACAGCGCCATGGAAATCTACCGCAAGAGGATTGAGCAGCAACTGGCGAGCGGAGCCACAAGGCAGATA ACGGAGAGGACACGCACGTTGAGGCCCAAGCCGGACACCTGGGATAGCGACTTTGACGGGAACTGGGAGGACGAG CCTGATGCGTGGACATTTGAAGACGTGACAATGAATTCCAACTCCAACTCTGTGTCACAACACAAAGGAAGGCCA ACGCGGGAGAAATCCGGCAAAGAAAGGATGGCAGACGCAGAAGAAGGGGATGGGCCGGCCCCAAGGACTGGAACG AGGACACGGGGAGGCAAGCCGACTACGACGAGGAAAGCAACCACAAAGAAGACGGCTTTGACCCGAGGTCGTGGA CGCCAAGTCGTCGATGAGAGCGAAGACGGGGGGCAGGAGGACATCATCATGGAGTCGGACGGGGATCCGCCTCCA GTAAAGGCCGTGGCCAAGACAAGGCAAGGTCAAGCTGCCAAAGCAAGGGCGTCGAAGCGACCGACGGCGACGACA CGAGGCGCAGCCAAGACGCGACAGACGACACTCGAATTCTCGCAGAAGGGACCGACGCAGGACCAGGCGCTACAT GTGAGCGACGACGAGATTTCTGACGACGACGACGCGTTTGAGCCGGCACCAGCGACGACAAGGACAAGGGCAAAG ACAAGGAGAGGG |
| Transcript | >Ophio5|5376 ATGAGCGAACTCACTGAGGCGGATACGATCCGCATACTCGTCGCGACGGACAACCACGTCGGCTTCGAGGAGCGC GATGCCATCCGGAAAGACGACAGCTGGCGCACGTTTGACGAGATTATGAATATAGGTCGGACAGAAAACGTTGAC ATGGTTCTGCTCGCGGGCGATCTGTTCCACGACAACAAGCCCTCTCGCAAGTCGCTGTACCAGGTTTTGCGGGCC CTGCGCAAGAATTGCCTTGGAATGAAGCCCTGCCCTCTCGAATTTCTCTCGGATGCCGCCGAAGTCTTTGAAGGC GCTTTCACCCATGTCAACTATGAAGACCCCGATATCAACGTCTCGATTCCCGTCTTCTCTATTCACGGAAACCAC GACGATCCCTCGGGTGACGGCAACTTGTGTTCTCTCGATCTGTTGCAGGCTAGCGGACTGCTAAACTACTTTGGC CGCGTGGCCGAGGCCGACAACATCGAGGCCAAGCCCATCCTGCTTCAGAAGGGCCTCACAAAGCTGGCTCTATTC GGACTCAGCAACGTCCGCGACGAGCGCATGTTTCGCACCTTTAGGGACCACAAGAACCACCATGCGCACACTGCC ACGTCGTACCTGCCGGAGAACGTGCTTCCAGACTGGCTCGATCTCGTTATCTGGGGTCATGAGCACGAGTGCCTT ATCGAGCCGACGAAGAACCCAGAAACTGGTTTTCACGTCATGCAGCCCGGCTCATCCGTTGCCACCTCGTTGGTG CCGGGAGAGGCTGTTCCAAAGCACGTGGCCATCGTCAGCATCACGGGAAAGGACTTTAGAGTCGACAAGATCCCA CTCCAGACGGTCCGGCCGTTCGTCACCCGGGATCTGGTGCTGGCCCAGGACAAGCGGTTCAAGGGGCTGGACAAG AAGAAGGACAACAGGCAGGAGGTCACGCGGCGATTGATGGAAGTCGTTGACGAGATGATCGAAGAAGCAAACACC GACTGGGAAGCAGTCCAGACAGGCGGTTCCGTGCTCGAGGAGCGTCCGCTGCCTCTCATCCGCCTCAAGGTGGAA TACAGCGCTCAGGAGGGCTGCCATTTCGAATGCGAAAACCCCCAGCGCTTCTCCAATCGATTCGTTGGCAAGGTG GCCAACACAAACGACGTGGTGTACTTTTATCGGAAGAAGACTTCGAGTAAAAAAGCTACGGCCGCCACACCGGCA GAAGCCCTGGAAGCCCTCGCTGACGGCAGCGACATGGTTAAGGTTGAGTCGCTTGTCCGAGACTTTTTGTCGGCC CAGTCGCTCAAGGTGCTACCGCAAGGACCCTTTGGCGACGCTGTCAACCAATTCGTCGCCAAAGACGACAAGCAC GCCATGGAGCTGTTCGTCTCGGAGCATCTTACTGGCCAGGTGAAGCAGCTTTTAGGTCTGGAATCAGACGATGAG GATCTGAACAGCGCCATGGAAATCTACCGCAAGAGGATTGAGCAGCAACTGGCGAGCGGAGCCACAAGGCAGATA ACGGAGAGGACACGCACGTTGAGGCCCAAGCCGGACACCTGGGATAGCGACTTTGACGGGAACTGGGAGGACGAG CCTGATGCGTGGACATTTGAAGACGTGACAATGAATTCCAACTCCAACTCTGTGTCACAACACAAAGGAAGGCCA ACGCGGGAGAAATCCGGCAAAGAAAGGATGGCAGACGCAGAAGAAGGGGATGGGCCGGCCCCAAGGACTGGAACG AGGACACGGGGAGGCAAGCCGACTACGACGAGGAAAGCAACCACAAAGAAGACGGCTTTGACCCGAGGTCGTGGA CGCCAAGTCGTCGATGAGAGCGAAGACGGGGGGCAGGAGGACATCATCATGGAGTCGGACGGGGATCCGCCTCCA GTAAAGGCCGTGGCCAAGACAAGGCAAGGTCAAGCTGCCAAAGCAAGGGCGTCGAAGCGACCGACGGCGACGACA CGAGGCGCAGCCAAGACGCGACAGACGACACTCGAATTCTCGCAGAAGGGACCGACGCAGGACCAGGCGCTACAT GTGAGCGACGACGAGATTTCTGACGACGACGACGCGTTTGAGCCGGCACCAGCGACGACAAGGACAAGGGCAAAG ACAAGGAGAGGGTGA |
| Gene | >Ophio5|5376 ATGAGCGAACTCACTGGTATCCGCCATCCCTCCCACCATACTCTACCTCGCCCTGACCCATTTGCAGAGGCGGAT ACGATCCGCATACTCGTCGCGACGGACAACCACGTCGGCTTCGAGGAGCGCGATGCCATCCGGAAAGACGACAGC TGGCGCACGTTTGACGAGATTATGAATATAGGTCGGACAGAAAACGCAAGTCATCATCCATTCACTCTAATATCC CCCCGACTGACGGTGGTCACCAGGTTGACATGGTTCTGCTCGCGGGCGATCTGTTCCACGACAACAAGCCCTCTC GCAAGTCGCTGTACCAGGTTTTGCGGGCCCTGCGCAAGAATTGCCTTGGAATGAAGCCCTGCCCTCTCGAATTTC TCTCGGATGCCGCCGAAGTCTTTGAAGGCGCTTTCACCCATGTCAACTATGAAGACCCCGATATCAACGTCTCGA TTCCCGTCTTCTCTATTCACGGAAACCACGACGATCCCTCGGGTGACGGCAACTTGTGTTCTCTCGATCTGTTGC AGGCTAGCGGACTGCTAAACTACTTTGGCCGCGTGGCCGAGGCCGACAACATCGAGGCCAAGCCCATCCTGCTTC AGAAGGGCCTCACAAAGCTGGCTCTATTCGGACTCAGCAACGTCCGCGACGAGCGCATGTTTCGCACCTTTAGGG ACCACAAGGTCAAGTGGTACCGTCCCAATGTGCAGATGGGCGGCTGGTTTAACCTGCTGGCCTTGCATCAGAACC ACCATGCGCACACTGCCACGTCGTACCTGCCGGAGAACGTGCTTCCAGACTGGCTCGATCTCGTTATCTGGGGTC ATGAGCACGAGTGCCTTATCGAGCCGACGAAGAACCCAGAAACTGGTTTTCACGTCATGCAGCCCGGCTCATCCG TTGCCACCTCGTTGGTGCCGGGAGAGGCTGTTCCAAAGCACGTGGCCATCGTCAGCATCACGGGAAAGGACTTTA GAGTCGACAAGATCCCACTCCAGACGGTCCGGCCGTTCGTCACCCGGGATCTGGTGCTGGCCCAGGACAAGCGGT TCAAGGGGCTGGACAAGAAGAAGGACAACAGGCAGGAGGTCACGCGGCGATTGATGGAAGTCGTTGACGAGATGA TCGAAGAAGCAAACACCGACTGGGAAGCAGTCCAGACAGGCGGTTCCGTGCTCGAGGAGCGTCCGCTGCCTCTCA TCCGCCTCAAGGTGGAATACAGCGCTCAGGAGGGCTGCCATTTCGAATGCGAAAACCCCCAGCGCTTCTCCAATC GATTCGTTGGCAAGGTGGCCAACACAAACGACGTGGTGTACTTTTATCGGAAGAAGACTTCGAGTAGTCAGTGCC GGCCTTGCTTTGTTCCCTCCTCCTCATACTGACAGCGCCCCAGAAAAAGCTACGGCCGCCACACCGGCAGAAGCC CTGGAAGCCCTCGCTGACGGCAGCGACATGGTTAAGGTTGAGTCGCTTGTCCGAGACTTTTTGTCGGCCCAGTCG CTCAAGGTGCTACCGCAAGGACCCTTTGGCGACGCTGTCAACCAATTCGTCGCCAAAGACGACAAGCACGCCATG GAGCTGTTCGTCTCGGAGCATCTTACTGGCCAGGTGAAGCAGCTTTTAGGTCTGGAATCAGACGATGAGGATCTG AACAGCGCCATGGAAATCTACCGCAAGAGGATTGAGCAGCAACTGGCGAGCGGAGCCACAAGGCAGATAACGGAG AGGACACGCACGTTGAGGCCCAAGCCGGACACCTGGGATAGCGACTTTGACGGGAACTGGGAGGACGAGCCTGAT GCGTGGACATTTGAAGACGTGACAATGAATTCCAACTCCAACTCTGTGTCACAACACAAAGGAAGGCCAACGCGG GAGAAATCCGGCAAAGAAAGGATGGCAGACGCAGAAGAAGGGGATGGGCCGGCCCCAAGGACTGGAACGAGGACA CGGGGAGGCAAGCCGACTACGACGAGGAAAGCAACCACAAAGAAGACGGCTTTGACCCGAGGTCGTGGACGCCAA GTCGTCGATGAGAGCGAAGACGGGGGGCAGGAGGACATCATCATGGAGTCGGACGGGGATCCGCCTCCAGTAAAG GCCGTGGCCAAGACAAGGCAAGGTCAAGCTGCCAAAGCAAGGGCGTCGAAGCGACCGACGGCGACGACACGAGGC GCAGCCAAGACGCGACAGACGACACTCGAATTCTCGCAGAAGGGACCGACGCAGGACCAGGCGCTACATGTGAGC GACGACGAGATTTCTGACGACGACGACGCGTTTGAGCCGGCACCAGCGACGACAAGGACAAGGGCAAAGACAAGG AGAGGGTGA |