Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5335
Gene name
Locationscaffold_433:13341..14271
Strand-
Gene length (bp)930
Transcript length (bp)864
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 30 0.45

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5335
MSNKPPSLIHLLLLSAALLCFLCPSSSYGFPPGQDESALPVGGDGCEPECGPVLRLAVDQDDFKGSDDDVANSST
LTDTGIIASSLEASEREKLQGDAHIQRAQLQAWKMLQSMRCDPDRKDSDRVALLAQLYLQVAADLSKAQEQAERM
PCGGPQPGDESDGTSLDELDPGYQPDPVGHDASQVGSNSGPSSTTQQHPTQPSQGVEKSGRPSETQTSSPTSPQP
GKDETRPTSHQPFQQVQKVSPPPSRTQSPSSASSPAGKRGATSSKKKKKKKATGGRRRLRFW
Coding >Ophio5|5335
ATGTCTAACAAACCTCCAAGCCTTATTCATCTTCTCCTCCTATCCGCAGCCCTTCTCTGCTTCCTCTGTCCCAGC
AGCAGCTACGGCTTCCCACCAGGCCAGGATGAATCAGCGCTCCCAGTAGGAGGCGACGGGTGCGAGCCGGAATGC
GGACCGGTGCTTCGACTCGCAGTCGACCAAGATGATTTCAAAGGCTCAGACGACGACGTGGCGAATAGTAGTACA
TTGACAGACACCGGAATCATTGCCTCGTCGCTCGAAGCGTCGGAAAGGGAAAAATTGCAAGGAGATGCTCACATT
CAACGAGCTCAGCTGCAAGCATGGAAAATGCTGCAATCGATGCGCTGCGATCCTGACCGTAAGGATTCGGATAGG
GTGGCGCTACTCGCTCAGCTCTATCTACAGGTGGCCGCCGACTTGAGCAAGGCCCAGGAACAAGCAGAGAGGATG
CCATGCGGTGGGCCTCAACCAGGTGATGAATCCGACGGCACGTCGTTGGACGAGCTCGATCCAGGCTATCAGCCA
GATCCAGTTGGTCACGATGCCTCACAAGTGGGCAGCAACAGCGGGCCATCATCGACGACGCAGCAGCATCCAACA
CAGCCTTCCCAAGGCGTTGAGAAGAGCGGAAGGCCTTCCGAGACGCAGACTTCTTCACCCACTTCTCCTCAACCT
GGCAAGGACGAGACGAGGCCGACAAGCCACCAGCCGTTCCAACAGGTACAAAAAGTCAGCCCTCCTCCGTCAAGG
ACGCAAAGCCCTTCATCCGCCTCGTCCCCCGCTGGCAAAAGAGGCGCGACGTCGTCCAAGAAGAAGAAGAAGAAG
AAGGCGACTGGCGGTCGACGACGACTTCGGTTCTGG
Transcript >Ophio5|5335
ATGTCTAACAAACCTCCAAGCCTTATTCATCTTCTCCTCCTATCCGCAGCCCTTCTCTGCTTCCTCTGTCCCAGC
AGCAGCTACGGCTTCCCACCAGGCCAGGATGAATCAGCGCTCCCAGTAGGAGGCGACGGGTGCGAGCCGGAATGC
GGACCGGTGCTTCGACTCGCAGTCGACCAAGATGATTTCAAAGGCTCAGACGACGACGTGGCGAATAGTAGTACA
TTGACAGACACCGGAATCATTGCCTCGTCGCTCGAAGCGTCGGAAAGGGAAAAATTGCAAGGAGATGCTCACATT
CAACGAGCTCAGCTGCAAGCATGGAAAATGCTGCAATCGATGCGCTGCGATCCTGACCGTAAGGATTCGGATAGG
GTGGCGCTACTCGCTCAGCTCTATCTACAGGTGGCCGCCGACTTGAGCAAGGCCCAGGAACAAGCAGAGAGGATG
CCATGCGGTGGGCCTCAACCAGGTGATGAATCCGACGGCACGTCGTTGGACGAGCTCGATCCAGGCTATCAGCCA
GATCCAGTTGGTCACGATGCCTCACAAGTGGGCAGCAACAGCGGGCCATCATCGACGACGCAGCAGCATCCAACA
CAGCCTTCCCAAGGCGTTGAGAAGAGCGGAAGGCCTTCCGAGACGCAGACTTCTTCACCCACTTCTCCTCAACCT
GGCAAGGACGAGACGAGGCCGACAAGCCACCAGCCGTTCCAACAGGTACAAAAAGTCAGCCCTCCTCCGTCAAGG
ACGCAAAGCCCTTCATCCGCCTCGTCCCCCGCTGGCAAAAGAGGCGCGACGTCGTCCAAGAAGAAGAAGAAGAAG
AAGGCGACTGGCGGTCGACGACGACTTCGGTTCTGGTAG
Gene >Ophio5|5335
ATGTCTAACAAACCTCCAAGCCTTATTCATCTTCTCCTCCTATCCGCAGCCCTTCTCTGCTTCCTCTGTCCCAGC
AGCAGCTACGGCTTCCCACCAGGCCAGGATGAATCAGCGCTCCCAGTAGGAGGCGACGGGTGCGAGCCGGAATGC
GGACCGGTGCTTCGACTCGCAGTCGACCAAGATGATTTCAAAGGCTCAGACGACGACGTGGCGAATAGTAGTACA
TTGACAGACACCGGAATCATTGCCTCGTCGCTCGAAGCGTCGGAAAGGGAAAAATTGCAAGGAGATGCTCACGTG
GGTGATTCTGGGTCGATTCCCTCCGCCACGAAGCCGACTGAAGATGAACTTCTTTCCCCAAAGATTCAACGAGCT
CAGCTGCAAGCATGGAAAATGCTGCAATCGATGCGCTGCGATCCTGACCGTAAGGATTCGGATAGGGTGGCGCTA
CTCGCTCAGCTCTATCTACAGGTGGCCGCCGACTTGAGCAAGGCCCAGGAACAAGCAGAGAGGATGCCATGCGGT
GGGCCTCAACCAGGTGATGAATCCGACGGCACGTCGTTGGACGAGCTCGATCCAGGCTATCAGCCAGATCCAGTT
GGTCACGATGCCTCACAAGTGGGCAGCAACAGCGGGCCATCATCGACGACGCAGCAGCATCCAACACAGCCTTCC
CAAGGCGTTGAGAAGAGCGGAAGGCCTTCCGAGACGCAGACTTCTTCACCCACTTCTCCTCAACCTGGCAAGGAC
GAGACGAGGCCGACAAGCCACCAGCCGTTCCAACAGGTACAAAAAGTCAGCCCTCCTCCGTCAAGGACGCAAAGC
CCTTCATCCGCCTCGTCCCCCGCTGGCAAAAGAGGCGCGACGTCGTCCAAGAAGAAGAAGAAGAAGAAGGCGACT
GGCGGTCGACGACGACTTCGGTTCTGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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