© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5334 |
| Gene name | |
| Location | scaffold_433:11752..13011 |
| Strand | - |
| Gene length (bp) | 1259 |
| Transcript length (bp) | 927 |
| Coding sequence length (bp) | 924 |
| Protein length (aa) | 308 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09807 | ELP6 | Elongation complex protein 6 | 3.7E-10 | 52 | 276 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74385|ELP6_SCHPO | Elongator complex protein 6 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp6 PE=3 SV=1 | 115 | 307 | 2.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033588 | elongator holoenzyme complex | Yes |
| GO:0002098 | tRNA wobble uridine modification | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006400 | tRNA modification | No |
| GO:0032991 | protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0008033 | tRNA processing | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034470 | ncRNA processing | No |
| GO:0009987 | cellular process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0005575 | cellular_component | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009451 | RNA modification | No |
| GO:0002097 | tRNA wobble base modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034660 | ncRNA metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006399 | tRNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 65.71 | 34.47 | 96.96 |
| CcL | In ants, during behavior modification | 63.32 | 33.12 | 93.52 |
| CcD | In ants, recently dead | 64.19 | 33.31 | 95.07 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.898532 | no |
| SC16a | CcD | 0.934878 | no |
| CcL | CcD | 0.962505 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5334 MSIPAPPPPPFTPMPGPHPLTYLSIYLSILSYRSSPPPPPAPHISKNPSINHTQQTESKGHALVLLTSVLGATTN WLVLRWLHAQLSSSSAEEPAAVVLVSFMRDGAFWREGAAKLGLDLEAMRRRRRFAFVDGLTGLFVSPPENGPPDR ILDSADLAAVMAGITAALDKDIDVAPRTVLIIDQIDALVATTGLASQAVQSALLPLRERVDTTVLTLAADDPLIH TQTTRLEREHASLVLSHAHAARTVVALRRLDSGPAPDVSGVIRISSRRRHPFDGQDDVPLPPDAEYLYHVAADWS VTVFERGA |
| Coding | >Ophio5|5334 ATGAGTATTCCCGCCCCTCCGCCGCCTCCGTTCACTCCAATGCCCGGACCCCATCCGTTAACCTATCTATCTATC TATCTATCTATCTTATCTTATCGCTCCTCTCCTCCTCCTCCTCCTGCTCCCCATATCTCCAAAAATCCATCCATC AATCACACGCAACAAACAGAAAGCAAGGGTCATGCCCTCGTCCTCCTCACCAGCGTGCTAGGCGCCACCACGAAC TGGCTGGTGCTGCGATGGCTTCACGCCCAGCTATCATCATCATCCGCCGAGGAGCCGGCCGCCGTCGTACTCGTC AGCTTCATGCGCGATGGTGCCTTTTGGCGCGAGGGCGCTGCTAAGCTCGGCCTTGATCTTGAAGCTATGCGTCGT CGTCGCCGCTTCGCCTTCGTCGACGGCCTTACCGGCCTGTTCGTCTCGCCGCCGGAAAACGGCCCGCCAGATAGG ATCCTCGACAGCGCGGATTTGGCTGCGGTCATGGCTGGCATCACTGCCGCCCTGGATAAGGATATCGACGTGGCG CCTAGAACGGTTCTCATCATCGACCAGATCGACGCCCTCGTCGCCACCACCGGTCTCGCCAGCCAAGCCGTCCAG AGCGCATTGCTTCCCCTACGCGAGCGCGTCGACACCACCGTCCTCACTCTGGCAGCCGATGATCCCCTCATCCAT ACGCAAACTACGCGCCTCGAGCGCGAGCACGCCTCCCTCGTCCTGAGCCACGCCCACGCCGCCCGTACCGTCGTC GCCTTGCGCCGCCTCGACTCTGGCCCTGCGCCGGACGTCAGCGGCGTCATACGCATCTCGTCCCGCCGGCGGCAT CCCTTCGACGGCCAAGATGACGTGCCTCTGCCGCCAGACGCCGAGTACTTGTATCACGTTGCTGCCGACTGGTCC GTTACCGTCTTTGAGAGGGGCGCT |
| Transcript | >Ophio5|5334 ATGAGTATTCCCGCCCCTCCGCCGCCTCCGTTCACTCCAATGCCCGGACCCCATCCGTTAACCTATCTATCTATC TATCTATCTATCTTATCTTATCGCTCCTCTCCTCCTCCTCCTCCTGCTCCCCATATCTCCAAAAATCCATCCATC AATCACACGCAACAAACAGAAAGCAAGGGTCATGCCCTCGTCCTCCTCACCAGCGTGCTAGGCGCCACCACGAAC TGGCTGGTGCTGCGATGGCTTCACGCCCAGCTATCATCATCATCCGCCGAGGAGCCGGCCGCCGTCGTACTCGTC AGCTTCATGCGCGATGGTGCCTTTTGGCGCGAGGGCGCTGCTAAGCTCGGCCTTGATCTTGAAGCTATGCGTCGT CGTCGCCGCTTCGCCTTCGTCGACGGCCTTACCGGCCTGTTCGTCTCGCCGCCGGAAAACGGCCCGCCAGATAGG ATCCTCGACAGCGCGGATTTGGCTGCGGTCATGGCTGGCATCACTGCCGCCCTGGATAAGGATATCGACGTGGCG CCTAGAACGGTTCTCATCATCGACCAGATCGACGCCCTCGTCGCCACCACCGGTCTCGCCAGCCAAGCCGTCCAG AGCGCATTGCTTCCCCTACGCGAGCGCGTCGACACCACCGTCCTCACTCTGGCAGCCGATGATCCCCTCATCCAT ACGCAAACTACGCGCCTCGAGCGCGAGCACGCCTCCCTCGTCCTGAGCCACGCCCACGCCGCCCGTACCGTCGTC GCCTTGCGCCGCCTCGACTCTGGCCCTGCGCCGGACGTCAGCGGCGTCATACGCATCTCGTCCCGCCGGCGGCAT CCCTTCGACGGCCAAGATGACGTGCCTCTGCCGCCAGACGCCGAGTACTTGTATCACGTTGCTGCCGACTGGTCC GTTACCGTCTTTGAGAGGGGCGCTTGA |
| Gene | >Ophio5|5334 ATGAGTATTCCCGCCCCTCCGCCGCCTCCGTTCACTCCAATGCCCGGACCCCATCCGTTAACGTCCGTCCGTCTG CCTGTCTCCACCCGGAACAGTCTCCACCCACCCCGGCGGATCCACAATCCATCTATCTAGCTATCTATCTATCTA TCTATCTATCTTATCTTATCGCTCCTCTCCTCCTCCTCCTCCTGCTCCCCATATCTCCAAAAATCCATCCATCAA TCACACGCAACAAACAGAAAGCAAGCATGTCCACCAAAGCCATCCCCCCGCTACTCGAACCGCTACTGACGCCCT CCTCCGCAAGGGGTCATGCCCTCGTCCTCCTCACCAGCGTGCTAGGCGCCACCACGAACTGGCTGGTGCTGCGAT GGCTTCACGCCCAGCTATCATCATCATCCGCCGAGGAGCCGGCCGCCGTCGTACTCGTCAGCTTCATGCGCGATG GTGCCTTTTGGCGCGAGGGCGCTGCTAAGCTCGTTTGTTTCCTTTCCCTTCCCTTTTTTTTTTTTCCTTTTCTTT TTCTCCTTTCTTTCACACTTGTTGTTGCTGACGGGTGAGAGTGTCGGGGTTAAATAATTAAATTGAAAAAAAAAA GGGCCTTGATCTTGAAGCTATGCGTCGTCGTCGCCGCTTCGCCTTCGTCGACGGCCTTACCGGCCTGTTCGTCTC GCCGCCGGAAAACGGCCCGCCAGATAGGATCCTCGACAGCGCGGATTTGGCTGCGGTCATGGCTGGCATCACTGC CGCCCTGGATAAGGATATCGACGTGGCGCCTAGAACGGTTCTCATCATCGACCAGATCGACGCCCTCGTCGCCAC CACCGGTCTCGCCAGCCAAGCCGTCCAGAGCGCATTGCTTCCCCTACGCGAGGTGCTTCAACCCCCCTCCCCCCA ACCCTATACGCGACATACCATTCTTGCAAGTCATGGCCCTGCTAAGACGGATGCAGCGCGTCGACACCACCGTCC TCACTCTGGCAGCCGATGATCCCCTCATCCATACGCAAACTACGCGCCTCGAGCGCGAGCACGCCTCCCTCGTCC TGAGCCACGCCCACGCCGCCCGTACCGTCGTCGCCTTGCGCCGCCTCGACTCTGGCCCTGCGCCGGACGTCAGCG GCGTCATACGCATCTCGTCCCGCCGGCGGCATCCCTTCGACGGCCAAGATGACGTGCCTCTGCCGCCAGACGCCG AGTACTTGTATCACGTTGCTGCCGACTGGTCCGTTACCGTCTTTGAGAGGGGCGCTTGA |