Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5334
Gene name
Locationscaffold_433:11752..13011
Strand-
Gene length (bp)1259
Transcript length (bp)927
Coding sequence length (bp)924
Protein length (aa) 308

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF09807 ELP6 Elongation complex protein 6 3.7E-10 52 276

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O74385|ELP6_SCHPO Elongator complex protein 6 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elp6 PE=3 SV=1 115 307 2.0E-11

GO

GO Term Description Terminal node
GO:0033588 elongator holoenzyme complex Yes
GO:0002098 tRNA wobble uridine modification Yes
GO:0071704 organic substance metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006400 tRNA modification No
GO:0032991 protein-containing complex No
GO:0044238 primary metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0008033 tRNA processing No
GO:0046483 heterocycle metabolic process No
GO:0043412 macromolecule modification No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008152 metabolic process No
GO:0044237 cellular metabolic process No
GO:0034470 ncRNA processing No
GO:0009987 cellular process No
GO:0140535 intracellular protein-containing complex No
GO:0005575 cellular_component No
GO:0016070 RNA metabolic process No
GO:0006396 RNA processing No
GO:1901360 organic cyclic compound metabolic process No
GO:0009451 RNA modification No
GO:0002097 tRNA wobble base modification No
GO:0006807 nitrogen compound metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006399 tRNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5334
MSIPAPPPPPFTPMPGPHPLTYLSIYLSILSYRSSPPPPPAPHISKNPSINHTQQTESKGHALVLLTSVLGATTN
WLVLRWLHAQLSSSSAEEPAAVVLVSFMRDGAFWREGAAKLGLDLEAMRRRRRFAFVDGLTGLFVSPPENGPPDR
ILDSADLAAVMAGITAALDKDIDVAPRTVLIIDQIDALVATTGLASQAVQSALLPLRERVDTTVLTLAADDPLIH
TQTTRLEREHASLVLSHAHAARTVVALRRLDSGPAPDVSGVIRISSRRRHPFDGQDDVPLPPDAEYLYHVAADWS
VTVFERGA
Coding >Ophio5|5334
ATGAGTATTCCCGCCCCTCCGCCGCCTCCGTTCACTCCAATGCCCGGACCCCATCCGTTAACCTATCTATCTATC
TATCTATCTATCTTATCTTATCGCTCCTCTCCTCCTCCTCCTCCTGCTCCCCATATCTCCAAAAATCCATCCATC
AATCACACGCAACAAACAGAAAGCAAGGGTCATGCCCTCGTCCTCCTCACCAGCGTGCTAGGCGCCACCACGAAC
TGGCTGGTGCTGCGATGGCTTCACGCCCAGCTATCATCATCATCCGCCGAGGAGCCGGCCGCCGTCGTACTCGTC
AGCTTCATGCGCGATGGTGCCTTTTGGCGCGAGGGCGCTGCTAAGCTCGGCCTTGATCTTGAAGCTATGCGTCGT
CGTCGCCGCTTCGCCTTCGTCGACGGCCTTACCGGCCTGTTCGTCTCGCCGCCGGAAAACGGCCCGCCAGATAGG
ATCCTCGACAGCGCGGATTTGGCTGCGGTCATGGCTGGCATCACTGCCGCCCTGGATAAGGATATCGACGTGGCG
CCTAGAACGGTTCTCATCATCGACCAGATCGACGCCCTCGTCGCCACCACCGGTCTCGCCAGCCAAGCCGTCCAG
AGCGCATTGCTTCCCCTACGCGAGCGCGTCGACACCACCGTCCTCACTCTGGCAGCCGATGATCCCCTCATCCAT
ACGCAAACTACGCGCCTCGAGCGCGAGCACGCCTCCCTCGTCCTGAGCCACGCCCACGCCGCCCGTACCGTCGTC
GCCTTGCGCCGCCTCGACTCTGGCCCTGCGCCGGACGTCAGCGGCGTCATACGCATCTCGTCCCGCCGGCGGCAT
CCCTTCGACGGCCAAGATGACGTGCCTCTGCCGCCAGACGCCGAGTACTTGTATCACGTTGCTGCCGACTGGTCC
GTTACCGTCTTTGAGAGGGGCGCT
Transcript >Ophio5|5334
ATGAGTATTCCCGCCCCTCCGCCGCCTCCGTTCACTCCAATGCCCGGACCCCATCCGTTAACCTATCTATCTATC
TATCTATCTATCTTATCTTATCGCTCCTCTCCTCCTCCTCCTCCTGCTCCCCATATCTCCAAAAATCCATCCATC
AATCACACGCAACAAACAGAAAGCAAGGGTCATGCCCTCGTCCTCCTCACCAGCGTGCTAGGCGCCACCACGAAC
TGGCTGGTGCTGCGATGGCTTCACGCCCAGCTATCATCATCATCCGCCGAGGAGCCGGCCGCCGTCGTACTCGTC
AGCTTCATGCGCGATGGTGCCTTTTGGCGCGAGGGCGCTGCTAAGCTCGGCCTTGATCTTGAAGCTATGCGTCGT
CGTCGCCGCTTCGCCTTCGTCGACGGCCTTACCGGCCTGTTCGTCTCGCCGCCGGAAAACGGCCCGCCAGATAGG
ATCCTCGACAGCGCGGATTTGGCTGCGGTCATGGCTGGCATCACTGCCGCCCTGGATAAGGATATCGACGTGGCG
CCTAGAACGGTTCTCATCATCGACCAGATCGACGCCCTCGTCGCCACCACCGGTCTCGCCAGCCAAGCCGTCCAG
AGCGCATTGCTTCCCCTACGCGAGCGCGTCGACACCACCGTCCTCACTCTGGCAGCCGATGATCCCCTCATCCAT
ACGCAAACTACGCGCCTCGAGCGCGAGCACGCCTCCCTCGTCCTGAGCCACGCCCACGCCGCCCGTACCGTCGTC
GCCTTGCGCCGCCTCGACTCTGGCCCTGCGCCGGACGTCAGCGGCGTCATACGCATCTCGTCCCGCCGGCGGCAT
CCCTTCGACGGCCAAGATGACGTGCCTCTGCCGCCAGACGCCGAGTACTTGTATCACGTTGCTGCCGACTGGTCC
GTTACCGTCTTTGAGAGGGGCGCTTGA
Gene >Ophio5|5334
ATGAGTATTCCCGCCCCTCCGCCGCCTCCGTTCACTCCAATGCCCGGACCCCATCCGTTAACGTCCGTCCGTCTG
CCTGTCTCCACCCGGAACAGTCTCCACCCACCCCGGCGGATCCACAATCCATCTATCTAGCTATCTATCTATCTA
TCTATCTATCTTATCTTATCGCTCCTCTCCTCCTCCTCCTCCTGCTCCCCATATCTCCAAAAATCCATCCATCAA
TCACACGCAACAAACAGAAAGCAAGCATGTCCACCAAAGCCATCCCCCCGCTACTCGAACCGCTACTGACGCCCT
CCTCCGCAAGGGGTCATGCCCTCGTCCTCCTCACCAGCGTGCTAGGCGCCACCACGAACTGGCTGGTGCTGCGAT
GGCTTCACGCCCAGCTATCATCATCATCCGCCGAGGAGCCGGCCGCCGTCGTACTCGTCAGCTTCATGCGCGATG
GTGCCTTTTGGCGCGAGGGCGCTGCTAAGCTCGTTTGTTTCCTTTCCCTTCCCTTTTTTTTTTTTCCTTTTCTTT
TTCTCCTTTCTTTCACACTTGTTGTTGCTGACGGGTGAGAGTGTCGGGGTTAAATAATTAAATTGAAAAAAAAAA
GGGCCTTGATCTTGAAGCTATGCGTCGTCGTCGCCGCTTCGCCTTCGTCGACGGCCTTACCGGCCTGTTCGTCTC
GCCGCCGGAAAACGGCCCGCCAGATAGGATCCTCGACAGCGCGGATTTGGCTGCGGTCATGGCTGGCATCACTGC
CGCCCTGGATAAGGATATCGACGTGGCGCCTAGAACGGTTCTCATCATCGACCAGATCGACGCCCTCGTCGCCAC
CACCGGTCTCGCCAGCCAAGCCGTCCAGAGCGCATTGCTTCCCCTACGCGAGGTGCTTCAACCCCCCTCCCCCCA
ACCCTATACGCGACATACCATTCTTGCAAGTCATGGCCCTGCTAAGACGGATGCAGCGCGTCGACACCACCGTCC
TCACTCTGGCAGCCGATGATCCCCTCATCCATACGCAAACTACGCGCCTCGAGCGCGAGCACGCCTCCCTCGTCC
TGAGCCACGCCCACGCCGCCCGTACCGTCGTCGCCTTGCGCCGCCTCGACTCTGGCCCTGCGCCGGACGTCAGCG
GCGTCATACGCATCTCGTCCCGCCGGCGGCATCCCTTCGACGGCCAAGATGACGTGCCTCTGCCGCCAGACGCCG
AGTACTTGTATCACGTTGCTGCCGACTGGTCCGTTACCGTCTTTGAGAGGGGCGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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