Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|533
Gene name
Locationscaffold_113:18065..18985
Strand-
Gene length (bp)920
Transcript length (bp)783
Coding sequence length (bp)780
Protein length (aa) 260

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08228 RNase_P_pop3 RNase P subunit Pop3 1.1E-06 119 233

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0008033 tRNA processing Yes
GO:0006364 rRNA processing Yes
GO:0071704 organic substance metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0008150 biological_process No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044238 primary metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0008152 metabolic process No
GO:0044237 cellular metabolic process No
GO:0034470 ncRNA processing No
GO:0009987 cellular process No
GO:0016070 RNA metabolic process No
GO:0006396 RNA processing No
GO:1901360 organic cyclic compound metabolic process No
GO:0016072 rRNA metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0034660 ncRNA metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0006399 tRNA metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|533
MSDICASDDIRILTERLNVLTPPSRLLDDSMSQPAGRTKMVHHLDTPYSTVSWPDISLDDQDAILELLCHLLSPL
GHHRRAHTRPSKGKRAARGRREKVDAEGAAPASAPVPPRPELCAKVDVGFNSITRTLQEPSFDARCQPYAMVFVA
RGNQSSAFNCHFPKMVGVASKDCPPDERTRLVGFSKPCSDRLSSSLGIARVSSVALSRDAPGAAALWDLVRRKVA
PVDMAWLEDAMSAEHRVTKIISVDTPMGSKRARTT
Coding >Ophio5|533
ATGTCTGATATTTGCGCCTCAGACGACATACGGATTTTAACAGAACGACTCAACGTCCTCACACCCCCGAGTAGG
CTACTTGACGACAGCATGTCGCAGCCCGCGGGTCGAACAAAGATGGTACACCACCTAGACACGCCCTACTCTACC
GTTTCATGGCCAGACATATCGCTAGACGACCAGGATGCCATATTGGAGCTGCTGTGTCACCTTCTGAGTCCTCTG
GGTCACCATCGCAGAGCTCACACTAGGCCTTCCAAGGGCAAGAGAGCGGCCAGGGGACGACGGGAAAAGGTCGAT
GCCGAGGGCGCCGCCCCCGCCAGTGCCCCAGTTCCGCCTCGACCGGAACTCTGCGCCAAAGTGGATGTCGGCTTC
AACTCGATAACGCGGACGCTCCAGGAACCCAGCTTCGATGCTCGCTGTCAGCCGTATGCGATGGTATTCGTGGCG
CGAGGCAACCAGTCGTCGGCGTTCAACTGCCACTTCCCTAAGATGGTCGGTGTCGCATCCAAAGACTGCCCTCCC
GACGAGAGAACGCGGCTCGTCGGATTCTCGAAGCCATGCTCAGATAGGCTCAGTTCTAGCCTTGGCATCGCTCGA
GTCTCGTCGGTTGCACTGTCGCGGGATGCTCCTGGCGCGGCGGCGCTGTGGGATCTGGTGCGCAGAAAGGTAGCC
CCGGTAGATATGGCGTGGCTCGAAGATGCAATGAGCGCCGAGCATCGAGTCACGAAGATCATCTCTGTAGACACG
CCAATGGGTAGCAAGAGGGCCAGGACGACG
Transcript >Ophio5|533
ATGTCTGATATTTGCGCCTCAGACGACATACGGATTTTAACAGAACGACTCAACGTCCTCACACCCCCGAGTAGG
CTACTTGACGACAGCATGTCGCAGCCCGCGGGTCGAACAAAGATGGTACACCACCTAGACACGCCCTACTCTACC
GTTTCATGGCCAGACATATCGCTAGACGACCAGGATGCCATATTGGAGCTGCTGTGTCACCTTCTGAGTCCTCTG
GGTCACCATCGCAGAGCTCACACTAGGCCTTCCAAGGGCAAGAGAGCGGCCAGGGGACGACGGGAAAAGGTCGAT
GCCGAGGGCGCCGCCCCCGCCAGTGCCCCAGTTCCGCCTCGACCGGAACTCTGCGCCAAAGTGGATGTCGGCTTC
AACTCGATAACGCGGACGCTCCAGGAACCCAGCTTCGATGCTCGCTGTCAGCCGTATGCGATGGTATTCGTGGCG
CGAGGCAACCAGTCGTCGGCGTTCAACTGCCACTTCCCTAAGATGGTCGGTGTCGCATCCAAAGACTGCCCTCCC
GACGAGAGAACGCGGCTCGTCGGATTCTCGAAGCCATGCTCAGATAGGCTCAGTTCTAGCCTTGGCATCGCTCGA
GTCTCGTCGGTTGCACTGTCGCGGGATGCTCCTGGCGCGGCGGCGCTGTGGGATCTGGTGCGCAGAAAGGTAGCC
CCGGTAGATATGGCGTGGCTCGAAGATGCAATGAGCGCCGAGCATCGAGTCACGAAGATCATCTCTGTAGACACG
CCAATGGGTAGCAAGAGGGCCAGGACGACGTGA
Gene >Ophio5|533
ATGTCTGATATTTGCGCCTCAGACGACATACGGATTTTAACAGAACGACTCAACGTCCTCACACCCCCGAGTAGG
CTACTTGACGACAGCATGTCGCAGCCCGCGGGTCGAACAAAGATGGTACACCACCTAGACACGCCCTACTCTACC
GTTTCATGGCAAGTATATCGAATGATGGCCACTCACTGCTCAGCAGCTCTAATGAAGGTTCAAAACTTTTAGGCC
AGACATATCGCTAGACGACCAGGATGCCATATTGGAGCTGCTGTGTCAGTGAGTATCTCCACTCTCCACGCGTGG
CGAGCTTCGTATTCATCTGCATGCTGGCTGACCGGTGGACGCGCAGCCTTCTGAGTCCTCTGGGTCACCATCGCA
GAGCTCACACTAGGCCTTCCAAGGGCAAGAGAGCGGCCAGGGGACGACGGGAAAAGGTCGATGCCGAGGGCGCCG
CCCCCGCCAGTGCCCCAGTTCCGCCTCGACCGGAACTCTGCGCCAAAGTGGATGTCGGCTTCAACTCGATAACGC
GGACGCTCCAGGAACCCAGCTTCGATGCTCGCTGTCAGCCGTATGCGATGGTATTCGTGGCGCGAGGCAACCAGT
CGTCGGCGTTCAACTGCCACTTCCCTAAGATGGTCGGTGTCGCATCCAAAGACTGCCCTCCCGACGAGAGAACGC
GGCTCGTCGGATTCTCGAAGCCATGCTCAGATAGGCTCAGTTCTAGCCTTGGCATCGCTCGAGTCTCGTCGGTTG
CACTGTCGCGGGATGCTCCTGGCGCGGCGGCGCTGTGGGATCTGGTGCGCAGAAAGGTAGCCCCGGTAGATATGG
CGTGGCTCGAAGATGCAATGAGCGCCGAGCATCGAGTCACGAAGATCATCTCTGTAGACACGCCAATGGGTAGCA
AGAGGGCCAGGACGACGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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