© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|5314 |
| Gene name | |
| Location | scaffold_430:8847..9622 |
| Strand | + |
| Gene length (bp) | 775 |
| Transcript length (bp) | 444 |
| Coding sequence length (bp) | 441 |
| Protein length (aa) | 147 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01198 | Ribosomal_L31e | Ribosomal protein L31e | 4.2E-40 | 42 | 123 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0C2H8|RL31A_YEAST | 60S ribosomal protein L31-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL31A PE=1 SV=1 | 38 | 147 | 3.0E-48 |
| sp|P0C2H9|RL31B_YEAST | 60S ribosomal protein L31-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL31B PE=1 SV=1 | 38 | 147 | 3.0E-48 |
| sp|Q6FWF4|RL31_CANGA | 60S ribosomal protein L31 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL31 PE=3 SV=1 | 38 | 147 | 7.0E-48 |
| sp|Q9XGL4|RL31_CYAPA | 60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1 | 31 | 142 | 7.0E-47 |
| sp|Q9IA76|RL31_PAROL | 60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1 | 28 | 147 | 2.0E-45 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0C2H8|RL31A_YEAST | 60S ribosomal protein L31-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL31A PE=1 SV=1 | 38 | 147 | 3.0E-48 |
| sp|P0C2H9|RL31B_YEAST | 60S ribosomal protein L31-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL31B PE=1 SV=1 | 38 | 147 | 3.0E-48 |
| sp|Q6FWF4|RL31_CANGA | 60S ribosomal protein L31 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL31 PE=3 SV=1 | 38 | 147 | 7.0E-48 |
| sp|Q9XGL4|RL31_CYAPA | 60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1 | 31 | 142 | 7.0E-47 |
| sp|Q9IA76|RL31_PAROL | 60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1 | 28 | 147 | 2.0E-45 |
| sp|Q90YT7|RL31_ICTPU | 60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1 | 37 | 147 | 3.0E-45 |
| sp|Q6NUH0|RL31_XENLA | 60S ribosomal protein L31 OS=Xenopus laevis GN=rpl31 PE=2 SV=1 | 37 | 147 | 1.0E-43 |
| sp|P62902|RL31_RAT | 60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1 | 37 | 147 | 3.0E-43 |
| sp|P62901|RL31_PIG | 60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=1 SV=1 | 37 | 147 | 3.0E-43 |
| sp|P62900|RL31_MOUSE | 60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=1 SV=1 | 37 | 147 | 3.0E-43 |
| sp|Q1KSC7|RL31_MARMO | 60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1 | 37 | 147 | 3.0E-43 |
| sp|P62899|RL31_HUMAN | 60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1 | 37 | 147 | 3.0E-43 |
| sp|Q56JX3|RL31_BOVIN | 60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1 | 37 | 147 | 3.0E-43 |
| sp|Q5RBR9|RL31_PONAB | 60S ribosomal protein L31 OS=Pongo abelii GN=RPL31 PE=2 SV=1 | 37 | 146 | 2.0E-42 |
| sp|Q757D7|RL31_ASHGO | 60S ribosomal protein L31 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL31 PE=3 SV=2 | 38 | 147 | 8.0E-42 |
| sp|Q9M573|RL31_PERFR | 60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1 | 42 | 147 | 6.0E-41 |
| sp|O65071|RL31_PICMA | 60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1 | 33 | 147 | 1.0E-40 |
| sp|P45841|RL31_CHLRE | 60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1 | 44 | 147 | 4.0E-39 |
| sp|Q9STR1|RL312_ARATH | 60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=3 SV=1 | 42 | 147 | 8.0E-38 |
| sp|Q9SLL7|RL311_ARATH | 60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=3 SV=1 | 42 | 147 | 2.0E-37 |
| sp|P51420|RL313_ARATH | 60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2 | 42 | 147 | 3.0E-37 |
| sp|Q54XB5|RL31_DICDI | 60S ribosomal protein L31 OS=Dictyostelium discoideum GN=rpl31 PE=3 SV=1 | 41 | 142 | 5.0E-37 |
| sp|Q9URX6|RL31_SCHPO | 60S ribosomal protein L31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl31 PE=3 SV=1 | 33 | 147 | 5.0E-37 |
| sp|Q9GP16|RL31_HELVI | 60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1 | 30 | 142 | 9.0E-37 |
| sp|Q7KF90|RL31_SPOFR | 60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1 | 30 | 142 | 9.0E-37 |
| sp|Q9V597|RL31_DROME | 60S ribosomal protein L31 OS=Drosophila melanogaster GN=RpL31 PE=1 SV=1 | 23 | 146 | 8.0E-33 |
| sp|P46290|RL31_NICGU | 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1 | 42 | 147 | 1.0E-31 |
| sp|Q9MAV7|RL31_PANGI | 60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1 | 42 | 147 | 5.0E-31 |
| sp|Q22DH9|RL31_TETTS | 60S ribosomal protein L31 OS=Tetrahymena thermophila (strain SB210) GN=RPL31 PE=1 SV=1 | 49 | 142 | 1.0E-30 |
| sp|Q9GN74|RL31_AEDAE | 60S ribosomal protein L31 OS=Aedes aegypti GN=RpL31 PE=2 SV=1 | 38 | 146 | 1.0E-28 |
| sp|Q9U332|RL31_CAEEL | 60S ribosomal protein L31 OS=Caenorhabditis elegans GN=rpl-31 PE=3 SV=1 | 34 | 146 | 1.0E-28 |
| sp|O18602|RL31_DROVI | 60S ribosomal protein L31 OS=Drosophila virilis GN=RpL31 PE=3 SV=1 | 28 | 146 | 2.0E-28 |
| sp|P54009|RL31_METJA | 50S ribosomal protein L31e OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpl31e PE=3 SV=1 | 46 | 110 | 3.0E-09 |
| sp|A6UR55|RL31_METVS | 50S ribosomal protein L31e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl31e PE=3 SV=1 | 46 | 110 | 1.0E-08 |
| sp|Q8TUY4|RL31_METKA | 50S ribosomal protein L31e OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl31e PE=3 SV=1 | 40 | 110 | 1.0E-08 |
| sp|A9A8N0|RL31_METM6 | 50S ribosomal protein L31e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl31e PE=3 SV=1 | 46 | 111 | 3.0E-08 |
| sp|Q6M155|RL31_METMP | 50S ribosomal protein L31e OS=Methanococcus maripaludis (strain S2 / LL) GN=rpl31e PE=3 SV=1 | 46 | 111 | 4.0E-08 |
| sp|A6VI49|RL31_METM7 | 50S ribosomal protein L31e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl31e PE=3 SV=1 | 46 | 111 | 5.0E-08 |
| sp|Q8U3S7|RL31_PYRFU | 50S ribosomal protein L31e OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl31e PE=1 SV=1 | 48 | 111 | 1.0E-07 |
| sp|A4G0C8|RL31_METM5 | 50S ribosomal protein L31e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl31e PE=3 SV=1 | 46 | 111 | 1.0E-07 |
| sp|A3CWZ5|RL31_METMJ | 50S ribosomal protein L31e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl31e PE=3 SV=1 | 63 | 110 | 2.0E-07 |
| sp|A6UT96|RL31_META3 | 50S ribosomal protein L31e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl31e PE=3 SV=1 | 46 | 111 | 2.0E-07 |
| sp|B8GEU5|RL31_METPE | 50S ribosomal protein L31e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl31e PE=3 SV=1 | 63 | 110 | 3.0E-07 |
| sp|A7I9I7|RL31_METB6 | 50S ribosomal protein L31e OS=Methanoregula boonei (strain 6A8) GN=rpl31e PE=3 SV=1 | 63 | 110 | 1.0E-06 |
| sp|Q9UYI7|RL31_PYRAB | 50S ribosomal protein L31e OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl31e PE=3 SV=1 | 48 | 129 | 2.0E-06 |
| sp|B6YWY3|RL31_THEON | 50S ribosomal protein L31e OS=Thermococcus onnurineus (strain NA1) GN=rpl31e PE=3 SV=1 | 48 | 126 | 3.0E-06 |
| sp|A8A968|RL31_IGNH4 | 50S ribosomal protein L31e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl31e PE=3 SV=1 | 48 | 136 | 6.0E-06 |
| sp|O27649|RL31_METTH | 50S ribosomal protein L31e OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpl31e PE=3 SV=1 | 64 | 110 | 7.0E-06 |
| sp|Q2FS98|RL31_METHJ | 50S ribosomal protein L31e OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rpl31e PE=3 SV=1 | 63 | 110 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005840 | ribosome | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0006412 | translation | Yes |
| GO:0006518 | peptide metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043226 | organelle | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0005198 | structural molecule activity | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 1276.34 | 608.36 | 1944.31 |
| CcL | In ants, during behavior modification | 2319.30 | 699.65 | 3938.95 |
| CcD | In ants, recently dead | 2290.16 | 942.01 | 3638.32 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.043078 | yes |
| SC16a | CcD | 0.028518 | yes |
| CcL | CcD | 0.974182 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5314 MPASTPPTRTSSPGRRRVGPEEMSSTKAKKPSGKAQRSAIADVVAREYTINMHKRLHGVSFKKRAPRAIKEIKAF ATKSMGTSDVRIDPQLNKKVWECGVKGVPFKLRVRISRRRNDEEDAKEKLYSYVQAVNVKNPKGLSTVIVEE |
| Coding | >Ophio5|5314 ATGCCAGCCTCCACACCACCGACGAGGACCTCATCGCCAGGCAGACGAAGAGTCGGACCCGAAGAAATGTCGTCG ACCAAGGCAAAGAAGCCCAGCGGCAAGGCTCAACGCTCCGCCATCGCGGACGTTGTTGCCCGCGAGTACACCATC AATATGCACAAGAGGTTACACGGCGTCTCCTTCAAAAAGAGGGCTCCGCGCGCCATCAAGGAGATCAAGGCGTTT GCTACCAAGTCCATGGGCACCTCGGACGTCCGCATCGACCCTCAGCTCAACAAAAAGGTGTGGGAGTGCGGTGTC AAGGGTGTCCCCTTCAAGCTCCGTGTCCGCATCTCGCGCCGACGAAACGACGAGGAGGACGCAAAGGAGAAGCTG TACAGCTACGTGCAGGCGGTCAACGTCAAGAACCCCAAGGGCCTTTCCACCGTCATTGTCGAGGAA |
| Transcript | >Ophio5|5314 ATGCCAGCCTCCACACCACCGACGAGGACCTCATCGCCAGGCAGACGAAGAGTCGGACCCGAAGAAATGTCGTCG ACCAAGGCAAAGAAGCCCAGCGGCAAGGCTCAACGCTCCGCCATCGCGGACGTTGTTGCCCGCGAGTACACCATC AATATGCACAAGAGGTTACACGGCGTCTCCTTCAAAAAGAGGGCTCCGCGCGCCATCAAGGAGATCAAGGCGTTT GCTACCAAGTCCATGGGCACCTCGGACGTCCGCATCGACCCTCAGCTCAACAAAAAGGTGTGGGAGTGCGGTGTC AAGGGTGTCCCCTTCAAGCTCCGTGTCCGCATCTCGCGCCGACGAAACGACGAGGAGGACGCAAAGGAGAAGCTG TACAGCTACGTGCAGGCGGTCAACGTCAAGAACCCCAAGGGCCTTTCCACCGTCATTGTCGAGGAATAA |
| Gene | >Ophio5|5314 ATGGTGGCTTCTGATTGGCTCGCTAGCCCTAGCACCTCACACTGGCTGCGCACAAAGAATCATTTTTTTTAGCCA GCCTCCACACCACCGACGAGGACCTCATCGCCAGGCAGACGAAGAGTCGGACCCGAAGGTACGAACACCGCAACA TCGCTTCTGTTTTCCCACTGCAGGAACCTTCGCGAACTCTACACTCCCTTCAAATCTCACCACGACGTTGCCGTC ACCCGTCCTCGACAGCAGACACCAACTGACACGCCCTATAGAAATGTCGTCGACCAAGGCAAAGAAGCCCAGCGG CAAGGCTCAACGCTCCGCCATCGCGGACGTTGTTGCCCGCGAGTACACCATCAATATGCACAAGAGGGTATGTCC TGGCTGAGGAAAACAACATGAGGCGGTTGCCGCGAGGGCTGACGGAGCTGTTGGTAAAAGTTACACGGCGTCTCC TTCAAAAAGAGGGCTCCGCGCGCCATCAAGGAGATCAAGGCGTTTGCTACCAAGTCCATGGTAAGGATATCGTGG TCGCTAGAACGACACCCTTCAAGGCGGCGCTGACACGACCGCCTAGGGCACCTCGGACGTCCGCATCGACCCTCA GCTCAACAAAAAGGTGTGGGAGTGCGGTGTCAAGGGTGTCCCCTTCAAGCTCCGTGTCCGCATCTCGCGCCGACG AAACGACGAGGAGGACGCAAAGGAGAAGCTGTACAGCTACGTGCAGGCGGTCAACGTCAAGAACCCCAAGGGCCT TTCCACCGTCATTGTCGAGGAATAA |