Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ophio5\|5313
Gene name
Location	scaffold_430:7033..8257
Strand	-
Gene length (bp)	1224
Transcript length (bp)	1089
Coding sequence length (bp)	1086
Protein length (aa)	362

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00615	RGS	Regulator of G protein signaling domain	1.0E-08	170	239

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P7S8\|RAX1_SCHPO	Protein rax1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rax1 PE=3 SV=1	22	362	2.0E-50
sp\|Q08760\|RAX1_YEAST	Bud site selection protein RAX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAX1 PE=1 SV=1	16	362	1.0E-33

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	252	274	22
2	281	303	22
3	336	358	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
SC16a	Pure fungal culture	204.72	107.67	301.76
CcL	In ants, during behavior modification	157.00	83.67	230.32
CcD	In ants, recently dead	166.52	88.96	244.09

Differential expression

Label1	Label2	Q-value	Significant difference
SC16a	CcL	0.270400	no
SC16a	CcD	0.403818	no
CcL	CcD	0.837848	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ophio5\|5313 MATNMAPASPSPQPDLSRNRLPTLFEVLSRRTLPPVDLFSFYIYMRDQQRSVDYLDFWLDVAQHMSLCRHYVREL RRSVLVATPDVDKAGSKRSSGILESLGDLEPRAAGPSMYASEKERDQDAQMSAFLREDQPHDSPHSGSGVVRPSP QYSTPRDVTDSNSPSHTVARQDIRASAEKILYTFLLPGAEREITLPGSITQDVTAAIEDQGRDDPEVFDVAKDYV FQAMERDAFPGFLRMKALGNLIPPTLVMRLIIGLVSMFGAFWAGFVLIFLDSWRATRCWLILPFTVGVYFLASYQ YSLDPIMALVGFSEYTPFNFSSIREPYVRQLLAKRAVMVLAVTLLVDAALCLLFILVPGKRL
Coding	>Ophio5\|5313 ATGGCGACCAATATGGCCCCGGCGAGTCCGTCGCCACAGCCCGACCTTTCGCGCAACAGACTTCCCACTCTCTTC GAAGTGCTGAGCCGCCGCACGCTTCCGCCCGTCGATCTCTTCTCCTTTTACATTTACATGCGCGACCAGCAGCGC TCGGTCGATTACCTCGATTTTTGGCTGGATGTGGCCCAACACATGTCTCTGTGCCGTCATTATGTGCGCGAGCTC CGACGATCTGTCCTTGTGGCCACGCCCGACGTCGACAAGGCCGGCTCCAAGAGGTCGTCGGGCATCCTCGAGAGC CTGGGCGATCTTGAGCCGCGTGCCGCCGGCCCCTCCATGTACGCGTCCGAAAAGGAGAGGGATCAGGACGCGCAG ATGTCGGCCTTTTTGCGCGAGGATCAGCCCCATGACTCTCCCCACAGCGGCTCCGGCGTCGTCCGGCCGAGCCCG CAGTACAGCACGCCCCGCGACGTGACCGACTCCAACTCGCCCTCGCATACCGTCGCCCGCCAGGACATCCGCGCC TCGGCCGAGAAGATCCTCTACACCTTTCTGCTACCGGGCGCCGAGCGGGAGATTACACTACCCGGATCCATCACT CAAGACGTCACCGCCGCCATCGAGGACCAAGGCCGCGACGACCCGGAGGTCTTTGACGTGGCCAAGGACTATGTC TTCCAGGCCATGGAAAGAGACGCCTTTCCGGGCTTCCTTCGCATGAAGGCCCTGGGCAACCTGATCCCCCCGACG CTCGTGATGCGGCTCATCATCGGCCTCGTCTCCATGTTTGGCGCCTTCTGGGCTGGCTTCGTCCTCATCTTTCTC GATAGCTGGCGCGCCACGAGGTGCTGGCTCATATTGCCCTTCACCGTCGGCGTCTACTTCCTCGCCTCGTACCAG TATTCCCTGGACCCCATCATGGCCCTGGTCGGCTTCAGCGAGTACACGCCCTTCAACTTCTCGAGCATACGGGAG CCCTACGTCCGTCAGCTCCTCGCCAAGCGCGCCGTCATGGTCCTCGCCGTGACTTTGCTCGTCGACGCTGCCCTC TGCCTGCTCTTCATCCTCGTGCCTGGCAAGCGGCTT
Transcript	>Ophio5\|5313 ATGGCGACCAATATGGCCCCGGCGAGTCCGTCGCCACAGCCCGACCTTTCGCGCAACAGACTTCCCACTCTCTTC GAAGTGCTGAGCCGCCGCACGCTTCCGCCCGTCGATCTCTTCTCCTTTTACATTTACATGCGCGACCAGCAGCGC TCGGTCGATTACCTCGATTTTTGGCTGGATGTGGCCCAACACATGTCTCTGTGCCGTCATTATGTGCGCGAGCTC CGACGATCTGTCCTTGTGGCCACGCCCGACGTCGACAAGGCCGGCTCCAAGAGGTCGTCGGGCATCCTCGAGAGC CTGGGCGATCTTGAGCCGCGTGCCGCCGGCCCCTCCATGTACGCGTCCGAAAAGGAGAGGGATCAGGACGCGCAG ATGTCGGCCTTTTTGCGCGAGGATCAGCCCCATGACTCTCCCCACAGCGGCTCCGGCGTCGTCCGGCCGAGCCCG CAGTACAGCACGCCCCGCGACGTGACCGACTCCAACTCGCCCTCGCATACCGTCGCCCGCCAGGACATCCGCGCC TCGGCCGAGAAGATCCTCTACACCTTTCTGCTACCGGGCGCCGAGCGGGAGATTACACTACCCGGATCCATCACT CAAGACGTCACCGCCGCCATCGAGGACCAAGGCCGCGACGACCCGGAGGTCTTTGACGTGGCCAAGGACTATGTC TTCCAGGCCATGGAAAGAGACGCCTTTCCGGGCTTCCTTCGCATGAAGGCCCTGGGCAACCTGATCCCCCCGACG CTCGTGATGCGGCTCATCATCGGCCTCGTCTCCATGTTTGGCGCCTTCTGGGCTGGCTTCGTCCTCATCTTTCTC GATAGCTGGCGCGCCACGAGGTGCTGGCTCATATTGCCCTTCACCGTCGGCGTCTACTTCCTCGCCTCGTACCAG TATTCCCTGGACCCCATCATGGCCCTGGTCGGCTTCAGCGAGTACACGCCCTTCAACTTCTCGAGCATACGGGAG CCCTACGTCCGTCAGCTCCTCGCCAAGCGCGCCGTCATGGTCCTCGCCGTGACTTTGCTCGTCGACGCTGCCCTC TGCCTGCTCTTCATCCTCGTGCCTGGCAAGCGGCTTTGA
Gene	>Ophio5\|5313 ATGGCGACCAATATGGCCCCGGCGAGTCCGTCGCCACAGCCCGACCTTTCGCGCAACAGACTTCCCACTCTCTTC GAAGTGCTGAGCCGCCGCACGCTTCCGCCCGTCGATCTCTTCTCCTTTTACATTTACATGCGCGACCAGCAGCGC TCGGTCGATTACCTCGATTTTTGGTAGGTCGTCTGGTGATTTCGGCGCCAATGAACCCTCCGCGGCCGCTGACGT GCTTACTCCAGGCTGGATGTGGCCCAACACATGTCTCTGTGCCGTCATTATGTGCGCGAGCTCCGACGATCTGTC CTTGTGGCCACGCCCGACGTCGACAAGGCCGGCTCCAAGAGGTCGTCGGGCATCCTCGAGAGCCTGGGCGATCTT GAGCCGCGTGCCGCCGGCCCCTCCATGTACGCGTCCGAAAAGGAGAGGGATCAGGACGCGCAGATGTCGGCCTTT TTGCGCGAGGATCAGCCCCATGACTCTCCCCACAGCGGCTCCGGCGTCGTCCGGCCGAGCCCGCAGTACAGCACG CCCCGCGACGTGACCGACTCCAACTCGCCCTCGCATACCGTCGCCCGCCAGGACATCCGCGCCTCGGCCGAGAAG ATCCTCTACACCTTTCTGCTACCGGGCGCCGAGCGGGAGATTACACTACCCGGATCCATCACTCAAGACGTCACC GCCGCCATCGAGGACCAAGGCCGCGACGACCCGGAGGTCTTTGACGTGGCCAAGGACTATGTCTTCCAGGCCATG GAAAGAGACGCCTTTCCGGGCTTCCTTCGCATGAAGGCCCTGGGCAACCTGATCCCCCCGACGCTCGTGATGCGG CTCATCATCGGCCTCGTCTCCATGTTTGGCGCCTTCTGGGCTGGCTTCGTCCTCATCTTTCTCGATAGCTGGCGC GCCACGAGGTGCTGGGTGAGTGTGCCCCGAGTCTTCTTTTCACTCGCCGCCGCAGCACACAGCTGGCTAACCCGT TTGCACGAAAAGCTCATATTGCCCTTCACCGTCGGCGTCTACTTCCTCGCCTCGTACCAGTATTCCCTGGACCCC ATCATGGCCCTGGTCGGCTTCAGCGAGTACACGCCCTTCAACTTCTCGAGCATACGGGAGCCCTACGTCCGTCAG CTCCTCGCCAAGCGCGCCGTCATGGTCCTCGCCGTGACTTTGCTCGTCGACGCTGCCCTCTGCCTGCTCTTCATC CTCGTGCCTGGCAAGCGGCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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