© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|529 |
| Gene name | |
| Location | scaffold_113:10936..12088 |
| Strand | + |
| Gene length (bp) | 1152 |
| Transcript length (bp) | 999 |
| Coding sequence length (bp) | 996 |
| Protein length (aa) | 332 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1JQ66|S35E3_DANRE | Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1 | 33 | 332 | 7.0E-44 |
| sp|Q7Z769|S35E3_HUMAN | Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1 | 39 | 331 | 2.0E-39 |
| sp|A4IFK2|S35E3_BOVIN | Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1 | 34 | 331 | 1.0E-37 |
| sp|Q6PGC7|S35E3_MOUSE | Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1 | 39 | 331 | 1.0E-37 |
| sp|Q8RXL8|Y1689_ARATH | Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1 | 50 | 322 | 6.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1JQ66|S35E3_DANRE | Solute carrier family 35 member E3 OS=Danio rerio GN=slc35e3 PE=2 SV=1 | 33 | 332 | 7.0E-44 |
| sp|Q7Z769|S35E3_HUMAN | Solute carrier family 35 member E3 OS=Homo sapiens GN=SLC35E3 PE=2 SV=1 | 39 | 331 | 2.0E-39 |
| sp|A4IFK2|S35E3_BOVIN | Solute carrier family 35 member E3 OS=Bos taurus GN=SLC35E3 PE=2 SV=1 | 34 | 331 | 1.0E-37 |
| sp|Q6PGC7|S35E3_MOUSE | Solute carrier family 35 member E3 OS=Mus musculus GN=Slc35e3 PE=2 SV=1 | 39 | 331 | 1.0E-37 |
| sp|Q8RXL8|Y1689_ARATH | Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1 | 50 | 322 | 6.0E-21 |
| sp|Q9SRE4|UGAL2_ARATH | UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1 | 23 | 322 | 1.0E-20 |
| sp|Q550W6|FUCT1_DICDI | GDP-fucose transporter 1 OS=Dictyostelium discoideum GN=slc35c1 PE=3 SV=1 | 43 | 323 | 5.0E-10 |
| sp|Q9SFE9|GONS5_ARATH | GDP-mannose transporter GONST5 OS=Arabidopsis thaliana GN=GONST5 PE=2 SV=1 | 97 | 332 | 9.0E-09 |
| sp|Q9C521|UGAL1_ARATH | UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1 | 97 | 332 | 7.0E-08 |
| sp|Q6DBP3|PT505_ARATH | Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1 | 93 | 322 | 8.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 32 | 54 | 22 |
| 2 | 66 | 88 | 22 |
| 3 | 103 | 125 | 22 |
| 4 | 138 | 169 | 31 |
| 5 | 184 | 206 | 22 |
| 6 | 218 | 237 | 19 |
| 7 | 252 | 274 | 22 |
| 8 | 281 | 298 | 17 |
| 9 | 308 | 326 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 19.79 | 7.95 | 31.62 |
| CcL | In ants, during behavior modification | 6.51 | 1.75 | 11.27 |
| CcD | In ants, recently dead | 9.29 | 2.65 | 15.92 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.001647 | yes |
| SC16a | CcD | 0.021188 | yes |
| CcL | CcD | 0.364901 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|529 MEKATDSLPASSDEELGLTVNDDSPSPRLAVAVAWMAVNTLATVGIVFTNKAIFSDPSWRQSQLTFASFHFFVTW ITLLVLANPTFAYFAPRRVSVRHLLPLALAMCLNVILPNCSLAFSSVTFYQVARVLLTPAVALVNFVLYGATLPP LAGLALVPVCLGVGIVSYYDSLPAADAHIKTTSPLGVVFAMAGVLASSLYTVWIASYHKKLQMTSMQLLYSQAPI ASFMLLYAIPFLDTLPDPSHVSTPRWLMVILSGAFASLINMSQFFIVAHTGPVSSTVVGHVKTCTIVCIGWIVSG RSAGDRALVGVFLAMAAILLYSIVMLKARKSG |
| Coding | >Ophio5|529 ATGGAAAAGGCCACGGACTCGTTGCCAGCCTCCTCAGACGAGGAGCTCGGCTTGACCGTCAACGACGATAGCCCC TCGCCCCGGCTCGCCGTCGCCGTCGCCTGGATGGCCGTCAACACCTTGGCCACGGTTGGAATCGTCTTCACCAAT AAAGCCATCTTCTCGGATCCCTCGTGGCGCCAGTCTCAGCTCACCTTTGCCAGCTTCCACTTCTTCGTCACTTGG ATCACCCTCCTCGTGCTCGCCAATCCGACCTTTGCCTACTTCGCTCCCCGCCGCGTTTCCGTTCGCCATCTGCTT CCCCTTGCCCTCGCCATGTGTCTCAATGTCATCCTTCCCAACTGCTCCTTGGCCTTCTCCTCCGTCACCTTCTAC CAGGTCGCACGTGTCTTGCTGACGCCTGCCGTGGCGCTCGTCAACTTTGTCCTATACGGCGCCACGCTGCCACCG CTCGCCGGCCTGGCCCTAGTTCCGGTCTGCCTCGGCGTCGGCATCGTATCTTACTACGACTCTCTCCCAGCTGCC GATGCACACATCAAGACCACGTCGCCCCTGGGCGTCGTCTTTGCCATGGCAGGAGTCCTGGCCTCTTCCCTCTAT ACCGTGTGGATCGCCAGCTATCACAAAAAGCTACAGATGACTAGCATGCAGCTGCTCTATAGCCAAGCACCCATC GCCTCATTCATGCTCCTTTACGCCATTCCCTTTCTCGATACGCTTCCTGATCCGAGTCATGTTTCCACGCCTAGA TGGCTGATGGTGATCCTGTCCGGAGCCTTTGCCTCCCTCATCAACATGTCACAATTCTTCATCGTCGCTCACACC GGCCCCGTGTCGAGCACTGTCGTCGGCCACGTCAAGACGTGCACCATTGTGTGTATCGGATGGATCGTATCGGGC CGTTCTGCCGGCGACAGAGCCCTGGTTGGCGTATTTCTTGCCATGGCCGCAATCCTACTGTACTCTATCGTCATG TTGAAGGCTCGCAAGTCGGGA |
| Transcript | >Ophio5|529 ATGGAAAAGGCCACGGACTCGTTGCCAGCCTCCTCAGACGAGGAGCTCGGCTTGACCGTCAACGACGATAGCCCC TCGCCCCGGCTCGCCGTCGCCGTCGCCTGGATGGCCGTCAACACCTTGGCCACGGTTGGAATCGTCTTCACCAAT AAAGCCATCTTCTCGGATCCCTCGTGGCGCCAGTCTCAGCTCACCTTTGCCAGCTTCCACTTCTTCGTCACTTGG ATCACCCTCCTCGTGCTCGCCAATCCGACCTTTGCCTACTTCGCTCCCCGCCGCGTTTCCGTTCGCCATCTGCTT CCCCTTGCCCTCGCCATGTGTCTCAATGTCATCCTTCCCAACTGCTCCTTGGCCTTCTCCTCCGTCACCTTCTAC CAGGTCGCACGTGTCTTGCTGACGCCTGCCGTGGCGCTCGTCAACTTTGTCCTATACGGCGCCACGCTGCCACCG CTCGCCGGCCTGGCCCTAGTTCCGGTCTGCCTCGGCGTCGGCATCGTATCTTACTACGACTCTCTCCCAGCTGCC GATGCACACATCAAGACCACGTCGCCCCTGGGCGTCGTCTTTGCCATGGCAGGAGTCCTGGCCTCTTCCCTCTAT ACCGTGTGGATCGCCAGCTATCACAAAAAGCTACAGATGACTAGCATGCAGCTGCTCTATAGCCAAGCACCCATC GCCTCATTCATGCTCCTTTACGCCATTCCCTTTCTCGATACGCTTCCTGATCCGAGTCATGTTTCCACGCCTAGA TGGCTGATGGTGATCCTGTCCGGAGCCTTTGCCTCCCTCATCAACATGTCACAATTCTTCATCGTCGCTCACACC GGCCCCGTGTCGAGCACTGTCGTCGGCCACGTCAAGACGTGCACCATTGTGTGTATCGGATGGATCGTATCGGGC CGTTCTGCCGGCGACAGAGCCCTGGTTGGCGTATTTCTTGCCATGGCCGCAATCCTACTGTACTCTATCGTCATG TTGAAGGCTCGCAAGTCGGGATAG |
| Gene | >Ophio5|529 ATGGAAAAGGCCACGGACTCGTTGCCAGCCTCCTCAGACGAGGAGCTCGGCTTGACCGTCAACGACGATAGCCCC TCGCCCCGGCTCGCCGTCGCCGTCGCCTGGATGGCCGTCAACACCTTGGCCACGGTTGGAATCGTATGCTAAGCA CCGTGTTGAAGACGCTGCCGCTGCCGCTCACCATCAACACCTTGCAGGTCTTCACCAATAAAGCCATCTTCTCGG ATCCCTCGTGGCGCCAGTCTCAGCTCACCTTTGCCAGCTTCCACTTCTTCGTCACTTGGATCACCCTCCTCGTGC TCGCCAATCCGACCTTTGCCTACTTCGCTCCCCGCCGCGTTTCCGTTCGCCATCTGCTTCCCCTTGCCCTCGCCA TGTGTCTCAATGTCATCCTTCCCAACTGCTCCTTGGCCTTCTCCTCCGTCACCTTCTACCAGGTCGCACGTGTCT TGCTGACGCCTGCCGTGGCGCTCGTCAACTTTGTCCTATACGGCGCCACGCTGCCACCGCTCGCCGGCCTGGCCC TAGTTCCGGTCTGCCTCGGCGTCGGCATCGTATCTTACTACGACTCTCTCCCAGCTGCCGATGCACACATCAAGA CCACGTCGCCCCTGGGCGTCGTCTTTGCCATGGCAGGAGTCCTGGCCTCTTCCCTCTATACCGTGTGGATCGCCA GCTATCACAAAAAGCTACAGATGACTAGCATGCAGCTGCTCTATAGCCAAGCACCCATCGCCTCATTCATGCTCC TTTACGCCATTCCCTTTCTCGATACGCTTCCTGATCCGAGTCATGTTTCCACGCCTAGATGGCTGATGGTGATCC TGGTATGTGATTCCCTCTCCTTGTATCGCGGCACTGACATGCCCAGTCCGGAGCCTTTGCCTCCCTCATCAACAT GTCACAATTCTTCATCGTCGCTCACACCGGCCCCGTGTCGAGCACTGTCGTCGGCCACGTCAAGACGTGCACCAT TGTGTGTATCGGATGGATCGTATCGGGCCGTTCTGCCGGCGACAGAGCCCTGGTTGGCGTATTTCTTGCCATGGC CGCAATCCTACTGTGAGTCACTTGATTTGGCCTTATGCATGCGCCACTCATCGCCGTCGCAGGTACTCTATCGTC ATGTTGAAGGCTCGCAAGTCGGGATAG |