© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ophio5|5243 |
| Gene name | |
| Location | scaffold_423:12567..14463 |
| Strand | + |
| Gene length (bp) | 1896 |
| Transcript length (bp) | 1896 |
| Coding sequence length (bp) | 1893 |
| Protein length (aa) | 631 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03142 | Chitin_synth_2 | Chitin synthase | 6.1E-24 | 263 | 531 |
| PF13641 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 | 2.6E-07 | 312 | 474 |
| PF13632 | Glyco_trans_2_3 | Glycosyl transferase family group 2 | 1.4E-06 | 316 | 537 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13395|CHS6_USTMA | Chitin synthase 6 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS6 PE=3 SV=2 | 149 | 480 | 2.0E-22 |
| sp|Q4P9K9|CHS8_USTMA | Chitin synthase 8 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS8 PE=3 SV=1 | 149 | 552 | 7.0E-19 |
| sp|O13394|CHS5_USTMA | Chitin synthase 5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS5 PE=3 SV=3 | 176 | 483 | 3.0E-17 |
| sp|P29465|CHS3_YEAST | Chitin synthase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHS3 PE=1 SV=3 | 175 | 482 | 3.0E-16 |
| sp|J9VXM5|CHS3_CRYNH | Chitin synthase 3 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CHS3 PE=3 SV=1 | 176 | 552 | 4.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13395|CHS6_USTMA | Chitin synthase 6 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS6 PE=3 SV=2 | 149 | 480 | 2.0E-22 |
| sp|Q4P9K9|CHS8_USTMA | Chitin synthase 8 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS8 PE=3 SV=1 | 149 | 552 | 7.0E-19 |
| sp|O13394|CHS5_USTMA | Chitin synthase 5 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS5 PE=3 SV=3 | 176 | 483 | 3.0E-17 |
| sp|P29465|CHS3_YEAST | Chitin synthase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHS3 PE=1 SV=3 | 175 | 482 | 3.0E-16 |
| sp|J9VXM5|CHS3_CRYNH | Chitin synthase 3 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CHS3 PE=3 SV=1 | 176 | 552 | 4.0E-16 |
| sp|O13353|CHS4_MAGO7 | Chitin synthase 4 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CHS4 PE=3 SV=2 | 175 | 552 | 4.0E-16 |
| sp|P78611|CHSD_EMENI | Chitin synthase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=chsD PE=3 SV=4 | 176 | 480 | 5.0E-16 |
| sp|Q4P333|CHS7_USTMA | Chitin synthase 7 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CHS7 PE=3 SV=1 | 174 | 480 | 4.0E-15 |
| sp|O13356|CHS1_CRYNH | Chitin synthase 1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CHS1 PE=3 SV=2 | 260 | 480 | 1.0E-14 |
| sp|P30573|CHS3_CANAX | Chitin synthase 3 OS=Candida albicans GN=CHS3 PE=3 SV=1 | 171 | 566 | 2.0E-14 |
| sp|Q01285|CHS4_NEUCR | Chitin synthase 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=chs-4 PE=3 SV=3 | 252 | 480 | 2.0E-14 |
| sp|Q8SSI7|CHS1_ENCCU | Chitin synthase 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=CHS1 PE=2 SV=1 | 261 | 543 | 2.0E-13 |
| sp|P78746|CHSD_ASPFU | Chitin synthase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=chsD PE=3 SV=1 | 310 | 524 | 2.0E-09 |
| sp|P26024|NODC_BRADU | N-acetylglucosaminyltransferase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN=nodC PE=3 SV=2 | 312 | 483 | 4.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 109 | 131 | 22 |
| 2 | 531 | 553 | 22 |
| 3 | 566 | 588 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5243 MSHHTLPLPVTASRRSKPRRTRQDWPCKQPTGQGLESRPVPCSEDGTDDKRSDEKSSASSDAVPSYLDKSFSCDA DGRWTRCGWPSLPEPVDRARKLSRAELAVQRAIFISFVVVINLGLAAMTIFAHVGIATLVLVLIFKLQDCLSSIV TIVCLAWTSVANLSRKSTPVPGQWVLTLLPAYNESEEQMLRAIEGLRDNIDAPHKQLIVIVLDGRPKTMRADFSH IVADFTRPYHSLKCRSGILHITAGFLQNVPIILIEKLQNSGKKDTLVLTHDLFNYPRDDMPEYTRLLRREIWETV LPELTKGTDFRSFDMIFCTDADSIIHKGCMTKLMKRLARDEKAIAACGLVLVEFEPGYRYSFWNFFQLLQYAYGQ HVRRWAEGFIGKVTCLPGCVTMIAVRPEMAGAIADFARPGQGDWVLHHQVQNLGTDRRLTYCMLSQSKELRTVFV PDAVSETVAPQSFKHYLDQRRRWGSNAYFNNFFYCGGRNMIPWTRLLAFLHIVRQTCVYFRILNTILFIRALVMH FHFLKILPLLVIGQFPAIWFCICLVSLRPLRVRIHQILVGFFVNKLVSPVMSSIVFAAVAINLGKAGWGMSGITA SSNPAVSRRQSIKSSDREQTPPRKSAAGGVE |
| Coding | >Ophio5|5243 ATGTCCCACCACACGCTTCCCCTGCCAGTCACCGCCAGCCGTCGCAGTAAGCCGAGACGAACGAGACAAGACTGG CCGTGCAAGCAGCCGACGGGACAAGGGCTAGAGTCACGACCGGTACCATGCTCGGAAGACGGCACAGATGACAAA AGGTCGGACGAAAAGTCGTCCGCTTCGAGCGATGCTGTTCCGTCTTACCTCGACAAGAGCTTCTCCTGCGACGCA GATGGTCGCTGGACAAGATGTGGCTGGCCGAGTCTTCCTGAGCCCGTCGATCGGGCACGGAAGCTATCACGGGCA GAGTTGGCTGTTCAACGAGCAATCTTCATCAGCTTCGTCGTCGTCATCAACCTCGGTCTCGCTGCCATGACCATC TTCGCCCACGTCGGTATTGCCACCCTCGTCCTCGTCCTCATCTTCAAGCTGCAGGACTGCCTGTCGAGCATCGTC ACCATTGTCTGCCTGGCCTGGACCTCGGTGGCCAACCTTTCCCGCAAGTCGACGCCCGTTCCTGGCCAATGGGTT CTCACTCTCCTTCCGGCTTACAACGAGAGCGAGGAGCAGATGTTGAGGGCCATCGAGGGCCTGCGAGACAACATC GACGCCCCTCATAAGCAGCTCATTGTCATCGTCCTCGACGGCCGGCCCAAAACGATGCGGGCCGACTTCTCGCAC ATCGTTGCCGACTTTACGCGGCCCTATCACTCGCTCAAGTGCCGGTCCGGAATCCTCCATATCACGGCCGGCTTC CTCCAGAACGTACCCATCATCCTGATTGAAAAGCTTCAGAATAGCGGCAAGAAGGATACCTTGGTGTTGACCCAC GATCTCTTCAATTACCCGCGCGACGATATGCCCGAATACACTCGCCTTTTGCGTCGAGAGATTTGGGAGACGGTC CTCCCCGAGCTCACCAAAGGCACCGACTTTCGCTCTTTCGACATGATCTTCTGCACCGACGCCGACTCCATCATC CACAAAGGCTGCATGACCAAGTTGATGAAGAGGCTGGCAAGGGATGAAAAGGCCATTGCCGCCTGCGGACTGGTC CTCGTCGAGTTCGAGCCGGGCTACCGGTACTCCTTCTGGAACTTCTTCCAGCTGTTGCAATACGCCTACGGTCAG CACGTCCGTCGCTGGGCCGAGGGCTTCATCGGCAAGGTGACGTGTCTGCCCGGCTGCGTGACCATGATCGCCGTC CGTCCCGAGATGGCCGGGGCCATTGCCGACTTTGCCCGGCCCGGCCAGGGGGACTGGGTTCTTCACCATCAAGTC CAGAACCTGGGAACCGACCGTCGTCTCACATACTGTATGCTGAGCCAGAGCAAGGAGTTGCGAACCGTCTTTGTT CCGGACGCCGTTTCCGAGACGGTGGCGCCCCAGTCCTTCAAGCATTACCTTGATCAGCGTCGCCGCTGGGGTTCC AATGCCTACTTCAACAACTTCTTCTATTGCGGGGGCCGCAACATGATTCCCTGGACCCGTCTCCTCGCCTTCCTA CACATTGTTCGCCAGACATGCGTCTATTTCCGCATCCTCAACACCATTCTTTTTATCCGCGCATTGGTGATGCAC TTCCACTTCCTCAAGATCCTTCCTTTGCTGGTCATAGGCCAGTTTCCAGCAATCTGGTTCTGCATCTGCCTTGTT AGCCTACGACCCTTGCGCGTCAGAATACACCAGATTCTCGTCGGATTCTTCGTCAACAAGCTCGTCTCGCCCGTC ATGTCCTCTATAGTCTTCGCAGCCGTGGCCATCAACCTGGGAAAGGCCGGCTGGGGGATGAGTGGCATCACCGCT TCTTCGAACCCTGCCGTCTCGCGGAGACAATCGATTAAATCCTCTGACAGGGAGCAGACACCGCCGAGGAAGTCT GCTGCTGGGGGAGTAGAA |
| Transcript | >Ophio5|5243 ATGTCCCACCACACGCTTCCCCTGCCAGTCACCGCCAGCCGTCGCAGTAAGCCGAGACGAACGAGACAAGACTGG CCGTGCAAGCAGCCGACGGGACAAGGGCTAGAGTCACGACCGGTACCATGCTCGGAAGACGGCACAGATGACAAA AGGTCGGACGAAAAGTCGTCCGCTTCGAGCGATGCTGTTCCGTCTTACCTCGACAAGAGCTTCTCCTGCGACGCA GATGGTCGCTGGACAAGATGTGGCTGGCCGAGTCTTCCTGAGCCCGTCGATCGGGCACGGAAGCTATCACGGGCA GAGTTGGCTGTTCAACGAGCAATCTTCATCAGCTTCGTCGTCGTCATCAACCTCGGTCTCGCTGCCATGACCATC TTCGCCCACGTCGGTATTGCCACCCTCGTCCTCGTCCTCATCTTCAAGCTGCAGGACTGCCTGTCGAGCATCGTC ACCATTGTCTGCCTGGCCTGGACCTCGGTGGCCAACCTTTCCCGCAAGTCGACGCCCGTTCCTGGCCAATGGGTT CTCACTCTCCTTCCGGCTTACAACGAGAGCGAGGAGCAGATGTTGAGGGCCATCGAGGGCCTGCGAGACAACATC GACGCCCCTCATAAGCAGCTCATTGTCATCGTCCTCGACGGCCGGCCCAAAACGATGCGGGCCGACTTCTCGCAC ATCGTTGCCGACTTTACGCGGCCCTATCACTCGCTCAAGTGCCGGTCCGGAATCCTCCATATCACGGCCGGCTTC CTCCAGAACGTACCCATCATCCTGATTGAAAAGCTTCAGAATAGCGGCAAGAAGGATACCTTGGTGTTGACCCAC GATCTCTTCAATTACCCGCGCGACGATATGCCCGAATACACTCGCCTTTTGCGTCGAGAGATTTGGGAGACGGTC CTCCCCGAGCTCACCAAAGGCACCGACTTTCGCTCTTTCGACATGATCTTCTGCACCGACGCCGACTCCATCATC CACAAAGGCTGCATGACCAAGTTGATGAAGAGGCTGGCAAGGGATGAAAAGGCCATTGCCGCCTGCGGACTGGTC CTCGTCGAGTTCGAGCCGGGCTACCGGTACTCCTTCTGGAACTTCTTCCAGCTGTTGCAATACGCCTACGGTCAG CACGTCCGTCGCTGGGCCGAGGGCTTCATCGGCAAGGTGACGTGTCTGCCCGGCTGCGTGACCATGATCGCCGTC CGTCCCGAGATGGCCGGGGCCATTGCCGACTTTGCCCGGCCCGGCCAGGGGGACTGGGTTCTTCACCATCAAGTC CAGAACCTGGGAACCGACCGTCGTCTCACATACTGTATGCTGAGCCAGAGCAAGGAGTTGCGAACCGTCTTTGTT CCGGACGCCGTTTCCGAGACGGTGGCGCCCCAGTCCTTCAAGCATTACCTTGATCAGCGTCGCCGCTGGGGTTCC AATGCCTACTTCAACAACTTCTTCTATTGCGGGGGCCGCAACATGATTCCCTGGACCCGTCTCCTCGCCTTCCTA CACATTGTTCGCCAGACATGCGTCTATTTCCGCATCCTCAACACCATTCTTTTTATCCGCGCATTGGTGATGCAC TTCCACTTCCTCAAGATCCTTCCTTTGCTGGTCATAGGCCAGTTTCCAGCAATCTGGTTCTGCATCTGCCTTGTT AGCCTACGACCCTTGCGCGTCAGAATACACCAGATTCTCGTCGGATTCTTCGTCAACAAGCTCGTCTCGCCCGTC ATGTCCTCTATAGTCTTCGCAGCCGTGGCCATCAACCTGGGAAAGGCCGGCTGGGGGATGAGTGGCATCACCGCT TCTTCGAACCCTGCCGTCTCGCGGAGACAATCGATTAAATCCTCTGACAGGGAGCAGACACCGCCGAGGAAGTCT GCTGCTGGGGGAGTAGAATAG |
| Gene | >Ophio5|5243 ATGTCCCACCACACGCTTCCCCTGCCAGTCACCGCCAGCCGTCGCAGTAAGCCGAGACGAACGAGACAAGACTGG CCGTGCAAGCAGCCGACGGGACAAGGGCTAGAGTCACGACCGGTACCATGCTCGGAAGACGGCACAGATGACAAA AGGTCGGACGAAAAGTCGTCCGCTTCGAGCGATGCTGTTCCGTCTTACCTCGACAAGAGCTTCTCCTGCGACGCA GATGGTCGCTGGACAAGATGTGGCTGGCCGAGTCTTCCTGAGCCCGTCGATCGGGCACGGAAGCTATCACGGGCA GAGTTGGCTGTTCAACGAGCAATCTTCATCAGCTTCGTCGTCGTCATCAACCTCGGTCTCGCTGCCATGACCATC TTCGCCCACGTCGGTATTGCCACCCTCGTCCTCGTCCTCATCTTCAAGCTGCAGGACTGCCTGTCGAGCATCGTC ACCATTGTCTGCCTGGCCTGGACCTCGGTGGCCAACCTTTCCCGCAAGTCGACGCCCGTTCCTGGCCAATGGGTT CTCACTCTCCTTCCGGCTTACAACGAGAGCGAGGAGCAGATGTTGAGGGCCATCGAGGGCCTGCGAGACAACATC GACGCCCCTCATAAGCAGCTCATTGTCATCGTCCTCGACGGCCGGCCCAAAACGATGCGGGCCGACTTCTCGCAC ATCGTTGCCGACTTTACGCGGCCCTATCACTCGCTCAAGTGCCGGTCCGGAATCCTCCATATCACGGCCGGCTTC CTCCAGAACGTACCCATCATCCTGATTGAAAAGCTTCAGAATAGCGGCAAGAAGGATACCTTGGTGTTGACCCAC GATCTCTTCAATTACCCGCGCGACGATATGCCCGAATACACTCGCCTTTTGCGTCGAGAGATTTGGGAGACGGTC CTCCCCGAGCTCACCAAAGGCACCGACTTTCGCTCTTTCGACATGATCTTCTGCACCGACGCCGACTCCATCATC CACAAAGGCTGCATGACCAAGTTGATGAAGAGGCTGGCAAGGGATGAAAAGGCCATTGCCGCCTGCGGACTGGTC CTCGTCGAGTTCGAGCCGGGCTACCGGTACTCCTTCTGGAACTTCTTCCAGCTGTTGCAATACGCCTACGGTCAG CACGTCCGTCGCTGGGCCGAGGGCTTCATCGGCAAGGTGACGTGTCTGCCCGGCTGCGTGACCATGATCGCCGTC CGTCCCGAGATGGCCGGGGCCATTGCCGACTTTGCCCGGCCCGGCCAGGGGGACTGGGTTCTTCACCATCAAGTC CAGAACCTGGGAACCGACCGTCGTCTCACATACTGTATGCTGAGCCAGAGCAAGGAGTTGCGAACCGTCTTTGTT CCGGACGCCGTTTCCGAGACGGTGGCGCCCCAGTCCTTCAAGCATTACCTTGATCAGCGTCGCCGCTGGGGTTCC AATGCCTACTTCAACAACTTCTTCTATTGCGGGGGCCGCAACATGATTCCCTGGACCCGTCTCCTCGCCTTCCTA CACATTGTTCGCCAGACATGCGTCTATTTCCGCATCCTCAACACCATTCTTTTTATCCGCGCATTGGTGATGCAC TTCCACTTCCTCAAGATCCTTCCTTTGCTGGTCATAGGCCAGTTTCCAGCAATCTGGTTCTGCATCTGCCTTGTT AGCCTACGACCCTTGCGCGTCAGAATACACCAGATTCTCGTCGGATTCTTCGTCAACAAGCTCGTCTCGCCCGTC ATGTCCTCTATAGTCTTCGCAGCCGTGGCCATCAACCTGGGAAAGGCCGGCTGGGGGATGAGTGGCATCACCGCT TCTTCGAACCCTGCCGTCTCGCGGAGACAATCGATTAAATCCTCTGACAGGGAGCAGACACCGCCGAGGAAGTCT GCTGCTGGGGGAGTAGAATAG |