Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5242
Gene name
Locationscaffold_423:8197..9840
Strand-
Gene length (bp)1643
Transcript length (bp)1449
Coding sequence length (bp)1446
Protein length (aa) 482

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00984 UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family, central domain 2.1E-19 274 346
PF03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1.6E-08 152 246

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|G3XD94|UGND_PSEAE UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=wbpA PE=1 SV=1 95 470 2.0E-45
sp|Q04972|VIPA_SALTI Vi polysaccharide biosynthesis protein VipA/TviB OS=Salmonella typhi GN=vipA PE=3 SV=1 96 436 2.0E-35
sp|P39861|CAPL_STAAU Protein CapL OS=Staphylococcus aureus GN=capL PE=3 SV=1 96 418 5.0E-34
sp|A4FY94|WECC_METM5 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1 96 427 4.0E-26
sp|P58591|EPSD_RALSO NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum (strain GMI1000) GN=epsD PE=3 SV=1 96 414 4.0E-26
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Swissprot ID Swissprot Description Start End E-value
sp|G3XD94|UGND_PSEAE UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=wbpA PE=1 SV=1 95 470 2.0E-45
sp|Q04972|VIPA_SALTI Vi polysaccharide biosynthesis protein VipA/TviB OS=Salmonella typhi GN=vipA PE=3 SV=1 96 436 2.0E-35
sp|P39861|CAPL_STAAU Protein CapL OS=Staphylococcus aureus GN=capL PE=3 SV=1 96 418 5.0E-34
sp|A4FY94|WECC_METM5 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1 96 427 4.0E-26
sp|P58591|EPSD_RALSO NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum (strain GMI1000) GN=epsD PE=3 SV=1 96 414 4.0E-26
sp|Q8Z389|WECC_SALTI UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhi GN=wecC PE=3 SV=1 96 439 8.0E-26
sp|Q45410|EPSD_RALSL NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1 96 410 2.0E-25
sp|P67067|WECC_SHIFL UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigella flexneri GN=wecC PE=3 SV=1 96 472 2.0E-25
sp|P27829|WECC_ECOLI UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli (strain K12) GN=wecC PE=1 SV=4 96 472 2.0E-25
sp|P67066|WECC_ECO57 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli O157:H7 GN=wecC PE=3 SV=1 96 472 2.0E-25
sp|Q9L6R4|WECC_SALTY UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=wecC PE=3 SV=1 96 439 4.0E-25
sp|A6USK4|WECC_METVS UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1 96 415 6.0E-25
sp|Q6LZC3|WECC_METMP UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain S2 / LL) GN=wecC PE=1 SV=1 96 463 6.0E-25
sp|Q57871|WECC_METJA UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=wecC PE=3 SV=1 96 367 1.0E-24
sp|A6VK13|WECC_METM7 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1 96 418 5.0E-24
sp|Q8ZAE4|WECC_YERPE UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersinia pestis GN=wecC PE=3 SV=1 96 439 1.0E-23
sp|A6UU98|WECC_META3 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1 96 427 4.0E-22
sp|D4GYH5|AGLM_HALVD UDP-glucose 6-dehydrogenase AglM OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=aglM PE=1 SV=1 96 438 2.0E-10
sp|Q47329|UDG5_ECOLX UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1 96 438 2.0E-09
sp|P96718|YWQF_BACSU UDP-glucose 6-dehydrogenase YwqF OS=Bacillus subtilis (strain 168) GN=ywqF PE=1 SV=1 96 415 4.0E-09
sp|Q7DBF9|UDG_ECO57 UDP-glucose 6-dehydrogenase OS=Escherichia coli O157:H7 GN=ugd PE=3 SV=1 96 432 3.0E-08
sp|Q04872|UDG_ECO11 UDP-glucose 6-dehydrogenase OS=Escherichia coli O111:H- GN=ugd PE=3 SV=1 96 376 4.0E-08
sp|P76373|UDG_ECOLI UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1 96 432 5.0E-08
sp|Q8FG45|UDG_ECOL6 UDP-glucose 6-dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ugd PE=3 SV=1 96 432 7.0E-08
sp|Q88NC4|ALGD_PSEPK GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1 96 423 8.0E-08
sp|Q04873|UDG_SALTY UDP-glucose 6-dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=udg PE=3 SV=1 96 443 3.0E-07
sp|O34862|YTCA_BACSU Putative UDP-glucose 6-dehydrogenase YtcA OS=Bacillus subtilis (strain 168) GN=ytcA PE=3 SV=1 96 427 7.0E-07
sp|O32271|TUAD_BACSU UDP-glucose 6-dehydrogenase TuaD OS=Bacillus subtilis (strain 168) GN=tuaD PE=1 SV=1 96 408 1.0E-06
sp|P59793|ALGD_PSESY GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1 96 414 1.0E-06
sp|P51585|ALGD_AZOVI GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1 96 418 1.0E-06
sp|Q92GB1|UDG_RICCN UDP-glucose 6-dehydrogenase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=udg PE=3 SV=1 148 428 2.0E-06
sp|P37791|UDG_SHIFL Putative UDP-glucose 6-dehydrogenase OS=Shigella flexneri GN=udg PE=5 SV=1 96 345 5.0E-06
sp|O07299|ALGD_PSESH GDP-mannose 6-dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola GN=algD PE=3 SV=1 96 414 6.0E-06
sp|Q1RKF8|UDG_RICBR UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1 157 428 6.0E-06
sp|Q887P8|ALGD_PSESM GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=algD PE=2 SV=1 96 414 8.0E-06
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GO

GO Term Description Terminal node
GO:0051287 NAD binding Yes
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Yes
GO:0036094 small molecule binding No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901265 nucleoside phosphate binding No
GO:0016491 oxidoreductase activity No
GO:0000166 nucleotide binding No
GO:0003824 catalytic activity No
GO:0003674 molecular_function No
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 21.00 9.79 32.22
CcL In ants, during behavior modification 42.92 22.06 63.77
CcD In ants, recently dead 14.44 6.08 22.80

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.003754 yes
SC16a CcD 0.180232 no
CcL CcD 0.000286 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5242
MAATPLSTTDDMVTAKEIPSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRYTTGRRWNHNDSPPTTPPPENE
FQDLVVPSSSEPVDINADPLVAVIGVGYVGTHLVEVFSRNYQTLGFDVSAKRVLELRHIFAGYRGVSLTCDPSDL
VRATHFLISVPTLLLPGNKVDTSYLRSALNTVAAHARPGSTVVIESSVAIGMTRDLLGPLAKLRGYYAGMSPERV
DPGRLEPAAYAIPKVVSGLDDIVPGSLSAIVRLYSAVFDRIVPVSKPEVAEMTKLYENCQRMMCIAYVNEMADAC
RPHQIDPFEVCSAAATKPFGYMPYRPGVGVGGHCIPVNPHYLLSNGSFPLLAAASEAMNRRPAKIAERVIERAER
VARKQNGGGKPRVLVVGVGFKAGQSTLSNSPGLALAEHLSVSGKVDVHFADPLVSQDVVPRIPRLDHDAWNRETL
SSYSVIVVTVHQVGLDFALLDGLEGVDIEWWC
Coding >Ophio5|5242
ATGGCCGCCACACCCCTTTCCACCACCGACGACATGGTGACGGCCAAGGAAATACCAAGCCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAG
CAGCAGCGGTACACAACTGGCCGGAGATGGAACCACAATGACTCCCCCCCAACCACTCCGCCGCCCGAAAACGAG
TTCCAAGACTTGGTAGTCCCTTCTTCGTCGGAGCCCGTCGACATCAACGCCGATCCCCTCGTGGCCGTCATCGGC
GTCGGCTACGTCGGAACGCACCTGGTGGAAGTCTTCTCGCGTAACTACCAAACGCTTGGCTTCGACGTGTCCGCC
AAGCGCGTCTTGGAACTCAGACACATCTTTGCCGGATACCGTGGCGTGTCCCTGACTTGTGACCCGTCGGATCTG
GTCCGGGCCACTCACTTCCTCATCTCGGTGCCTACGCTGCTGCTCCCCGGAAACAAGGTCGACACGTCCTATCTG
CGCAGCGCCTTGAACACGGTAGCCGCTCACGCCCGGCCCGGATCCACCGTCGTCATCGAGAGCTCCGTCGCTATC
GGCATGACCCGGGATCTGCTGGGTCCGCTGGCCAAGCTTCGCGGCTACTACGCTGGCATGTCTCCCGAGCGCGTC
GACCCCGGTCGTCTGGAGCCGGCAGCCTATGCCATCCCCAAAGTAGTCTCGGGCCTGGACGACATCGTCCCCGGT
TCTCTCTCCGCCATCGTCCGCCTCTACTCGGCCGTCTTTGATCGAATCGTGCCGGTATCGAAGCCCGAAGTGGCC
GAGATGACCAAGCTGTACGAAAACTGTCAACGGATGATGTGCATCGCCTACGTCAACGAGATGGCCGATGCCTGT
CGGCCGCACCAAATCGACCCCTTTGAGGTTTGCTCCGCCGCAGCGACGAAGCCGTTTGGTTACATGCCTTATCGG
CCAGGCGTCGGCGTCGGCGGCCATTGCATCCCCGTCAACCCCCATTACCTGCTGTCCAACGGCTCCTTTCCGCTC
CTCGCCGCCGCCAGCGAGGCCATGAACCGGAGGCCGGCCAAGATCGCCGAGCGCGTCATCGAGAGGGCCGAGAGA
GTGGCGCGTAAGCAGAATGGTGGTGGTAAGCCGCGCGTGCTCGTCGTCGGCGTCGGCTTCAAAGCCGGCCAGTCT
ACGCTCAGCAACTCGCCCGGCCTCGCCCTCGCTGAGCATCTCTCCGTATCCGGTAAAGTCGACGTTCATTTCGCC
GACCCGCTCGTCAGCCAAGACGTCGTCCCTCGCATCCCTCGCCTCGACCATGATGCTTGGAACCGGGAGACGCTC
TCATCCTACAGCGTCATTGTCGTCACCGTGCACCAGGTCGGCCTTGACTTTGCCTTGCTCGACGGCTTGGAGGGT
GTCGATATCGAATGGTGGTGT
Transcript >Ophio5|5242
ATGGCCGCCACACCCCTTTCCACCACCGACGACATGGTGACGGCCAAGGAAATACCAAGCCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAG
CAGCAGCGGTACACAACTGGCCGGAGATGGAACCACAATGACTCCCCCCCAACCACTCCGCCGCCCGAAAACGAG
TTCCAAGACTTGGTAGTCCCTTCTTCGTCGGAGCCCGTCGACATCAACGCCGATCCCCTCGTGGCCGTCATCGGC
GTCGGCTACGTCGGAACGCACCTGGTGGAAGTCTTCTCGCGTAACTACCAAACGCTTGGCTTCGACGTGTCCGCC
AAGCGCGTCTTGGAACTCAGACACATCTTTGCCGGATACCGTGGCGTGTCCCTGACTTGTGACCCGTCGGATCTG
GTCCGGGCCACTCACTTCCTCATCTCGGTGCCTACGCTGCTGCTCCCCGGAAACAAGGTCGACACGTCCTATCTG
CGCAGCGCCTTGAACACGGTAGCCGCTCACGCCCGGCCCGGATCCACCGTCGTCATCGAGAGCTCCGTCGCTATC
GGCATGACCCGGGATCTGCTGGGTCCGCTGGCCAAGCTTCGCGGCTACTACGCTGGCATGTCTCCCGAGCGCGTC
GACCCCGGTCGTCTGGAGCCGGCAGCCTATGCCATCCCCAAAGTAGTCTCGGGCCTGGACGACATCGTCCCCGGT
TCTCTCTCCGCCATCGTCCGCCTCTACTCGGCCGTCTTTGATCGAATCGTGCCGGTATCGAAGCCCGAAGTGGCC
GAGATGACCAAGCTGTACGAAAACTGTCAACGGATGATGTGCATCGCCTACGTCAACGAGATGGCCGATGCCTGT
CGGCCGCACCAAATCGACCCCTTTGAGGTTTGCTCCGCCGCAGCGACGAAGCCGTTTGGTTACATGCCTTATCGG
CCAGGCGTCGGCGTCGGCGGCCATTGCATCCCCGTCAACCCCCATTACCTGCTGTCCAACGGCTCCTTTCCGCTC
CTCGCCGCCGCCAGCGAGGCCATGAACCGGAGGCCGGCCAAGATCGCCGAGCGCGTCATCGAGAGGGCCGAGAGA
GTGGCGCGTAAGCAGAATGGTGGTGGTAAGCCGCGCGTGCTCGTCGTCGGCGTCGGCTTCAAAGCCGGCCAGTCT
ACGCTCAGCAACTCGCCCGGCCTCGCCCTCGCTGAGCATCTCTCCGTATCCGGTAAAGTCGACGTTCATTTCGCC
GACCCGCTCGTCAGCCAAGACGTCGTCCCTCGCATCCCTCGCCTCGACCATGATGCTTGGAACCGGGAGACGCTC
TCATCCTACAGCGTCATTGTCGTCACCGTGCACCAGGTCGGCCTTGACTTTGCCTTGCTCGACGGCTTGGAGGGT
GTCGATATCGAATGGTGGTGTTAG
Gene >Ophio5|5242
ATGGCCGCCACACCCCTTTCCACCACCGACGACATGGTGACGGCCAAGGAAATACCAAGCCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAG
CAGCAGCGGTACACAACTGGCCGGAGATGGAACCACAATGACTCCCCCCCAACCACTCCGCCGCCCGAAAACGAG
TTCCAAGACTTGGTAGTCCCTTCTTCGTCGGAGCCCGTCGACATCAACGCCGATCCCCTCGTGGCCGTCATCGGC
GTCGGCTACGTCGGAACGCACCTGGTGGAAGTCTTCTCGCGTAACTACCAAACGCTTGGCTTCGACGTGTCCGCC
AAGCGCGTCTTGGAACTCAGACACATCTTTGCCGGATACCGTGGCGTGTCCCTGACTTGTGACCCGTCGGATCTG
GTCCGGGCCACTCACTTCCTCATCTCGGTGCCTACGCTGCTGCTCCCCGGAAACAAGGTCGACACGTCCTATCTG
CGCAGCGCCTTGAACACGGTAGCCGCTCACGCCCGGCCCGGATCCACCGTCGTCATCGAGAGCTCCGTCGCTATC
GGCATGACCCGGGATCTGCTGGGTCCGCTGGCCAAGCTTCGCGGCTACTACGCTGGCATGTCTCCCGAGGTAACG
TCTCTTGACTTTCTTTTCCCTCTTTCTCTCTCTCTTTCTCTCTCTCTCTCCCCCCCTTTCTCTCTTCTCAGAAAA
CCTTCTCCCTTTCTCTCTTCTCAGAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAACAGCGCGTCGACCCCGGTCGTCTGGAGCCGGCAGCCTATG
CCATCCCCAAAGTAGTCTCGGGCCTGGACGACATCGTCCCCGGTTCTCTCTCCGCCATCGTCCGCCTCTACTCGG
CCGTCTTTGATCGAATCGTGCCGGTATCGAAGCCCGAAGTGGCCGAGATGACCAAGCTGTACGAAAACTGTCAAC
GGATGATGTGCATCGCCTACGTCAACGAGATGGCCGATGCCTGTCGGCCGCACCAAATCGACCCCTTTGAGGTTT
GCTCCGCCGCAGCGACGAAGCCGTTTGGTTACATGCCTTATCGGCCAGGCGTCGGCGTCGGCGGCCATTGCATCC
CCGTCAACCCCCATTACCTGCTGTCCAACGGCTCCTTTCCGCTCCTCGCCGCCGCCAGCGAGGCCATGAACCGGA
GGCCGGCCAAGATCGCCGAGCGCGTCATCGAGAGGGCCGAGAGAGTGGCGCGTAAGCAGAATGGTGGTGGTAAGC
CGCGCGTGCTCGTCGTCGGCGTCGGCTTCAAAGCCGGCCAGTCTACGCTCAGCAACTCGCCCGGCCTCGCCCTCG
CTGAGCATCTCTCCGTATCCGGTAAAGTCGACGTTCATTTCGCCGACCCGCTCGTCAGCCAAGACGTCGTCCCTC
GCATCCCTCGCCTCGACCATGATGCTTGGAACCGGGAGACGCTCTCATCCTACAGCGTCATTGTCGTCACCGTGC
ACCAGGTCGGCCTTGACTTTGCCTTGCTCGACGGCTTGGAGGGTGTCGATATCGAATGGTGGTGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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