Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5242
Gene name
Locationscaffold_423:8197..9840
Strand-
Gene length (bp)1643
Transcript length (bp)1449
Coding sequence length (bp)1446
Protein length (aa) 482

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00984 UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family, central domain 2.1E-19 274 346
PF03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1.6E-08 152 246

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|G3XD94|UGND_PSEAE UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=wbpA PE=1 SV=1 95 470 2.0E-45
sp|Q04972|VIPA_SALTI Vi polysaccharide biosynthesis protein VipA/TviB OS=Salmonella typhi GN=vipA PE=3 SV=1 96 436 2.0E-35
sp|P39861|CAPL_STAAU Protein CapL OS=Staphylococcus aureus GN=capL PE=3 SV=1 96 418 5.0E-34
sp|A4FY94|WECC_METM5 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1 96 427 4.0E-26
sp|P58591|EPSD_RALSO NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum (strain GMI1000) GN=epsD PE=3 SV=1 96 414 4.0E-26
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Swissprot ID Swissprot Description Start End E-value
sp|G3XD94|UGND_PSEAE UDP-N-acetyl-D-glucosamine 6-dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=wbpA PE=1 SV=1 95 470 2.0E-45
sp|Q04972|VIPA_SALTI Vi polysaccharide biosynthesis protein VipA/TviB OS=Salmonella typhi GN=vipA PE=3 SV=1 96 436 2.0E-35
sp|P39861|CAPL_STAAU Protein CapL OS=Staphylococcus aureus GN=capL PE=3 SV=1 96 418 5.0E-34
sp|A4FY94|WECC_METM5 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1 96 427 4.0E-26
sp|P58591|EPSD_RALSO NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum (strain GMI1000) GN=epsD PE=3 SV=1 96 414 4.0E-26
sp|Q8Z389|WECC_SALTI UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhi GN=wecC PE=3 SV=1 96 439 8.0E-26
sp|Q45410|EPSD_RALSL NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase OS=Ralstonia solanacearum GN=epsD PE=3 SV=1 96 410 2.0E-25
sp|P67067|WECC_SHIFL UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigella flexneri GN=wecC PE=3 SV=1 96 472 2.0E-25
sp|P27829|WECC_ECOLI UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli (strain K12) GN=wecC PE=1 SV=4 96 472 2.0E-25
sp|P67066|WECC_ECO57 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli O157:H7 GN=wecC PE=3 SV=1 96 472 2.0E-25
sp|Q9L6R4|WECC_SALTY UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=wecC PE=3 SV=1 96 439 4.0E-25
sp|A6USK4|WECC_METVS UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=wecC PE=3 SV=1 96 415 6.0E-25
sp|Q6LZC3|WECC_METMP UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain S2 / LL) GN=wecC PE=1 SV=1 96 463 6.0E-25
sp|Q57871|WECC_METJA UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=wecC PE=3 SV=1 96 367 1.0E-24
sp|A6VK13|WECC_METM7 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1 96 418 5.0E-24
sp|Q8ZAE4|WECC_YERPE UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersinia pestis GN=wecC PE=3 SV=1 96 439 1.0E-23
sp|A6UU98|WECC_META3 UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=wecC PE=3 SV=1 96 427 4.0E-22
sp|D4GYH5|AGLM_HALVD UDP-glucose 6-dehydrogenase AglM OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=aglM PE=1 SV=1 96 438 2.0E-10
sp|Q47329|UDG5_ECOLX UDP-glucose 6-dehydrogenase OS=Escherichia coli GN=kfiD PE=3 SV=1 96 438 2.0E-09
sp|P96718|YWQF_BACSU UDP-glucose 6-dehydrogenase YwqF OS=Bacillus subtilis (strain 168) GN=ywqF PE=1 SV=1 96 415 4.0E-09
sp|Q7DBF9|UDG_ECO57 UDP-glucose 6-dehydrogenase OS=Escherichia coli O157:H7 GN=ugd PE=3 SV=1 96 432 3.0E-08
sp|Q04872|UDG_ECO11 UDP-glucose 6-dehydrogenase OS=Escherichia coli O111:H- GN=ugd PE=3 SV=1 96 376 4.0E-08
sp|P76373|UDG_ECOLI UDP-glucose 6-dehydrogenase OS=Escherichia coli (strain K12) GN=ugd PE=1 SV=1 96 432 5.0E-08
sp|Q8FG45|UDG_ECOL6 UDP-glucose 6-dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ugd PE=3 SV=1 96 432 7.0E-08
sp|Q88NC4|ALGD_PSEPK GDP-mannose 6-dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=algD PE=3 SV=1 96 423 8.0E-08
sp|Q04873|UDG_SALTY UDP-glucose 6-dehydrogenase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=udg PE=3 SV=1 96 443 3.0E-07
sp|O34862|YTCA_BACSU Putative UDP-glucose 6-dehydrogenase YtcA OS=Bacillus subtilis (strain 168) GN=ytcA PE=3 SV=1 96 427 7.0E-07
sp|O32271|TUAD_BACSU UDP-glucose 6-dehydrogenase TuaD OS=Bacillus subtilis (strain 168) GN=tuaD PE=1 SV=1 96 408 1.0E-06
sp|P59793|ALGD_PSESY GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1 96 414 1.0E-06
sp|P51585|ALGD_AZOVI GDP-mannose 6-dehydrogenase OS=Azotobacter vinelandii GN=algD PE=3 SV=1 96 418 1.0E-06
sp|Q92GB1|UDG_RICCN UDP-glucose 6-dehydrogenase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=udg PE=3 SV=1 148 428 2.0E-06
sp|P37791|UDG_SHIFL Putative UDP-glucose 6-dehydrogenase OS=Shigella flexneri GN=udg PE=5 SV=1 96 345 5.0E-06
sp|O07299|ALGD_PSESH GDP-mannose 6-dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola GN=algD PE=3 SV=1 96 414 6.0E-06
sp|Q1RKF8|UDG_RICBR UDP-glucose 6-dehydrogenase OS=Rickettsia bellii (strain RML369-C) GN=udg PE=3 SV=1 157 428 6.0E-06
sp|Q887P8|ALGD_PSESM GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=algD PE=2 SV=1 96 414 8.0E-06
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GO

GO Term Description Terminal node
GO:0051287 NAD binding Yes
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Yes
GO:0036094 small molecule binding No
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901265 nucleoside phosphate binding No
GO:0016491 oxidoreductase activity No
GO:0000166 nucleotide binding No
GO:0003824 catalytic activity No
GO:0003674 molecular_function No
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors No
GO:1901363 heterocyclic compound binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5242
MAATPLSTTDDMVTAKEIPSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRYTTGRRWNHNDSPPTTPPPENE
FQDLVVPSSSEPVDINADPLVAVIGVGYVGTHLVEVFSRNYQTLGFDVSAKRVLELRHIFAGYRGVSLTCDPSDL
VRATHFLISVPTLLLPGNKVDTSYLRSALNTVAAHARPGSTVVIESSVAIGMTRDLLGPLAKLRGYYAGMSPERV
DPGRLEPAAYAIPKVVSGLDDIVPGSLSAIVRLYSAVFDRIVPVSKPEVAEMTKLYENCQRMMCIAYVNEMADAC
RPHQIDPFEVCSAAATKPFGYMPYRPGVGVGGHCIPVNPHYLLSNGSFPLLAAASEAMNRRPAKIAERVIERAER
VARKQNGGGKPRVLVVGVGFKAGQSTLSNSPGLALAEHLSVSGKVDVHFADPLVSQDVVPRIPRLDHDAWNRETL
SSYSVIVVTVHQVGLDFALLDGLEGVDIEWWC
Coding >Ophio5|5242
ATGGCCGCCACACCCCTTTCCACCACCGACGACATGGTGACGGCCAAGGAAATACCAAGCCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAG
CAGCAGCGGTACACAACTGGCCGGAGATGGAACCACAATGACTCCCCCCCAACCACTCCGCCGCCCGAAAACGAG
TTCCAAGACTTGGTAGTCCCTTCTTCGTCGGAGCCCGTCGACATCAACGCCGATCCCCTCGTGGCCGTCATCGGC
GTCGGCTACGTCGGAACGCACCTGGTGGAAGTCTTCTCGCGTAACTACCAAACGCTTGGCTTCGACGTGTCCGCC
AAGCGCGTCTTGGAACTCAGACACATCTTTGCCGGATACCGTGGCGTGTCCCTGACTTGTGACCCGTCGGATCTG
GTCCGGGCCACTCACTTCCTCATCTCGGTGCCTACGCTGCTGCTCCCCGGAAACAAGGTCGACACGTCCTATCTG
CGCAGCGCCTTGAACACGGTAGCCGCTCACGCCCGGCCCGGATCCACCGTCGTCATCGAGAGCTCCGTCGCTATC
GGCATGACCCGGGATCTGCTGGGTCCGCTGGCCAAGCTTCGCGGCTACTACGCTGGCATGTCTCCCGAGCGCGTC
GACCCCGGTCGTCTGGAGCCGGCAGCCTATGCCATCCCCAAAGTAGTCTCGGGCCTGGACGACATCGTCCCCGGT
TCTCTCTCCGCCATCGTCCGCCTCTACTCGGCCGTCTTTGATCGAATCGTGCCGGTATCGAAGCCCGAAGTGGCC
GAGATGACCAAGCTGTACGAAAACTGTCAACGGATGATGTGCATCGCCTACGTCAACGAGATGGCCGATGCCTGT
CGGCCGCACCAAATCGACCCCTTTGAGGTTTGCTCCGCCGCAGCGACGAAGCCGTTTGGTTACATGCCTTATCGG
CCAGGCGTCGGCGTCGGCGGCCATTGCATCCCCGTCAACCCCCATTACCTGCTGTCCAACGGCTCCTTTCCGCTC
CTCGCCGCCGCCAGCGAGGCCATGAACCGGAGGCCGGCCAAGATCGCCGAGCGCGTCATCGAGAGGGCCGAGAGA
GTGGCGCGTAAGCAGAATGGTGGTGGTAAGCCGCGCGTGCTCGTCGTCGGCGTCGGCTTCAAAGCCGGCCAGTCT
ACGCTCAGCAACTCGCCCGGCCTCGCCCTCGCTGAGCATCTCTCCGTATCCGGTAAAGTCGACGTTCATTTCGCC
GACCCGCTCGTCAGCCAAGACGTCGTCCCTCGCATCCCTCGCCTCGACCATGATGCTTGGAACCGGGAGACGCTC
TCATCCTACAGCGTCATTGTCGTCACCGTGCACCAGGTCGGCCTTGACTTTGCCTTGCTCGACGGCTTGGAGGGT
GTCGATATCGAATGGTGGTGT
Transcript >Ophio5|5242
ATGGCCGCCACACCCCTTTCCACCACCGACGACATGGTGACGGCCAAGGAAATACCAAGCCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAG
CAGCAGCGGTACACAACTGGCCGGAGATGGAACCACAATGACTCCCCCCCAACCACTCCGCCGCCCGAAAACGAG
TTCCAAGACTTGGTAGTCCCTTCTTCGTCGGAGCCCGTCGACATCAACGCCGATCCCCTCGTGGCCGTCATCGGC
GTCGGCTACGTCGGAACGCACCTGGTGGAAGTCTTCTCGCGTAACTACCAAACGCTTGGCTTCGACGTGTCCGCC
AAGCGCGTCTTGGAACTCAGACACATCTTTGCCGGATACCGTGGCGTGTCCCTGACTTGTGACCCGTCGGATCTG
GTCCGGGCCACTCACTTCCTCATCTCGGTGCCTACGCTGCTGCTCCCCGGAAACAAGGTCGACACGTCCTATCTG
CGCAGCGCCTTGAACACGGTAGCCGCTCACGCCCGGCCCGGATCCACCGTCGTCATCGAGAGCTCCGTCGCTATC
GGCATGACCCGGGATCTGCTGGGTCCGCTGGCCAAGCTTCGCGGCTACTACGCTGGCATGTCTCCCGAGCGCGTC
GACCCCGGTCGTCTGGAGCCGGCAGCCTATGCCATCCCCAAAGTAGTCTCGGGCCTGGACGACATCGTCCCCGGT
TCTCTCTCCGCCATCGTCCGCCTCTACTCGGCCGTCTTTGATCGAATCGTGCCGGTATCGAAGCCCGAAGTGGCC
GAGATGACCAAGCTGTACGAAAACTGTCAACGGATGATGTGCATCGCCTACGTCAACGAGATGGCCGATGCCTGT
CGGCCGCACCAAATCGACCCCTTTGAGGTTTGCTCCGCCGCAGCGACGAAGCCGTTTGGTTACATGCCTTATCGG
CCAGGCGTCGGCGTCGGCGGCCATTGCATCCCCGTCAACCCCCATTACCTGCTGTCCAACGGCTCCTTTCCGCTC
CTCGCCGCCGCCAGCGAGGCCATGAACCGGAGGCCGGCCAAGATCGCCGAGCGCGTCATCGAGAGGGCCGAGAGA
GTGGCGCGTAAGCAGAATGGTGGTGGTAAGCCGCGCGTGCTCGTCGTCGGCGTCGGCTTCAAAGCCGGCCAGTCT
ACGCTCAGCAACTCGCCCGGCCTCGCCCTCGCTGAGCATCTCTCCGTATCCGGTAAAGTCGACGTTCATTTCGCC
GACCCGCTCGTCAGCCAAGACGTCGTCCCTCGCATCCCTCGCCTCGACCATGATGCTTGGAACCGGGAGACGCTC
TCATCCTACAGCGTCATTGTCGTCACCGTGCACCAGGTCGGCCTTGACTTTGCCTTGCTCGACGGCTTGGAGGGT
GTCGATATCGAATGGTGGTGTTAG
Gene >Ophio5|5242
ATGGCCGCCACACCCCTTTCCACCACCGACGACATGGTGACGGCCAAGGAAATACCAAGCCAGCAACAGCAGCAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAGCAG
CAGCAGCGGTACACAACTGGCCGGAGATGGAACCACAATGACTCCCCCCCAACCACTCCGCCGCCCGAAAACGAG
TTCCAAGACTTGGTAGTCCCTTCTTCGTCGGAGCCCGTCGACATCAACGCCGATCCCCTCGTGGCCGTCATCGGC
GTCGGCTACGTCGGAACGCACCTGGTGGAAGTCTTCTCGCGTAACTACCAAACGCTTGGCTTCGACGTGTCCGCC
AAGCGCGTCTTGGAACTCAGACACATCTTTGCCGGATACCGTGGCGTGTCCCTGACTTGTGACCCGTCGGATCTG
GTCCGGGCCACTCACTTCCTCATCTCGGTGCCTACGCTGCTGCTCCCCGGAAACAAGGTCGACACGTCCTATCTG
CGCAGCGCCTTGAACACGGTAGCCGCTCACGCCCGGCCCGGATCCACCGTCGTCATCGAGAGCTCCGTCGCTATC
GGCATGACCCGGGATCTGCTGGGTCCGCTGGCCAAGCTTCGCGGCTACTACGCTGGCATGTCTCCCGAGGTAACG
TCTCTTGACTTTCTTTTCCCTCTTTCTCTCTCTCTTTCTCTCTCTCTCTCCCCCCCTTTCTCTCTTCTCAGAAAA
CCTTCTCCCTTTCTCTCTTCTCAGAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAACAGCGCGTCGACCCCGGTCGTCTGGAGCCGGCAGCCTATG
CCATCCCCAAAGTAGTCTCGGGCCTGGACGACATCGTCCCCGGTTCTCTCTCCGCCATCGTCCGCCTCTACTCGG
CCGTCTTTGATCGAATCGTGCCGGTATCGAAGCCCGAAGTGGCCGAGATGACCAAGCTGTACGAAAACTGTCAAC
GGATGATGTGCATCGCCTACGTCAACGAGATGGCCGATGCCTGTCGGCCGCACCAAATCGACCCCTTTGAGGTTT
GCTCCGCCGCAGCGACGAAGCCGTTTGGTTACATGCCTTATCGGCCAGGCGTCGGCGTCGGCGGCCATTGCATCC
CCGTCAACCCCCATTACCTGCTGTCCAACGGCTCCTTTCCGCTCCTCGCCGCCGCCAGCGAGGCCATGAACCGGA
GGCCGGCCAAGATCGCCGAGCGCGTCATCGAGAGGGCCGAGAGAGTGGCGCGTAAGCAGAATGGTGGTGGTAAGC
CGCGCGTGCTCGTCGTCGGCGTCGGCTTCAAAGCCGGCCAGTCTACGCTCAGCAACTCGCCCGGCCTCGCCCTCG
CTGAGCATCTCTCCGTATCCGGTAAAGTCGACGTTCATTTCGCCGACCCGCTCGTCAGCCAAGACGTCGTCCCTC
GCATCCCTCGCCTCGACCATGATGCTTGGAACCGGGAGACGCTCTCATCCTACAGCGTCATTGTCGTCACCGTGC
ACCAGGTCGGCCTTGACTTTGCCTTGCTCGACGGCTTGGAGGGTGTCGATATCGAATGGTGGTGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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