Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5224
Gene name
Locationscaffold_421:3632..4687
Strand-
Gene length (bp)1055
Transcript length (bp)858
Coding sequence length (bp)855
Protein length (aa) 285

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01544 CorA CorA-like Mg2+ transporter protein 7.5E-12 99 230

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0046873 metal ion transmembrane transporter activity Yes
GO:0030001 metal ion transport Yes
GO:0055085 transmembrane transport Yes
GO:0015075 ion transmembrane transporter activity No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0022857 transmembrane transporter activity No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0005575 cellular_component No
GO:0008324 cation transmembrane transporter activity No
GO:0006811 ion transport No
GO:0006812 cation transport No
GO:0015318 inorganic molecular entity transmembrane transporter activity No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Signal peptide|Transmembrane domain 0.181 0.0561 0.0895 0.541 0.1859 0.0112 0.3993 0.3227 0.4457 0.0905

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 177 199 22
2 217 239 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 18.94 7.01 30.87
CcL In ants, during behavior modification 72.22 32.19 112.26
CcD In ants, recently dead 17.63 6.46 28.80

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.000286 yes
SC16a CcD 0.853098 no
CcL CcD 0.000286 yes

Orthologs

Orthofinder run ID4
Orthogroup5972
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-floridani Ophcf2|05082
Ophiocordyceps camponoti-rufipedis Ophun1|2126
Ophiocordyceps camponoti-rufipedis Ophun1|2856
Ophiocordyceps kimflemingae Ophio5|5203
Ophiocordyceps kimflemingae Ophio5|5224 (this protein)
Ophiocordyceps kimflemingae Ophio5|5225

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5224
MDHSPRPHAHAHGLLRDCVSAAADSSPLSLHEIFFGAYIANWRPYIAFYERKFLRKANSISATYIEQPLSVKYED
LSFIYSLENRFPAATSMLTAAQQALAGAAAMLRLQHPAESLDAVQNVFENHGLRCAAYARAADHLRQRSQTTAQL
LATTLSQRDQVIAKEQNRNMLLLNKSAVFVTALTLVYAPASFIATFFGMNFFAMDQGNSRIVATPMIWIYLVATL
GLTMATVAFYYLLVRYDEILFRLLAPRVPKLAIGHGLRNLTQRFTNTRQAADIQLQGIMV
Coding >Ophio5|5224
ATGGACCATTCTCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCC
AGCCCACTGTCGCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAA
CGGAAGTTCCTTCGAAAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGAT
CTCAGCTTCATCTACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTG
GCCGGCGCGGCGGCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAAC
CATGGCCTTCGCTGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTG
CTGGCTACGACGCTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAG
TCGGCCGTCTTCGTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCACCTTCTTCGGCATGAAC
TTCTTCGCTATGGATCAGGGCAATAGTCGCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTC
GGCCTAACAATGGCCACCGTCGCCTTCTACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCG
CCCAGGGTGCCCAAGCTGGCCATCGGCCACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCG
GCCGACATACAGCTCCAGGGCATCATGGTT
Transcript >Ophio5|5224
ATGGACCATTCTCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCC
AGCCCACTGTCGCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAA
CGGAAGTTCCTTCGAAAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGAT
CTCAGCTTCATCTACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTG
GCCGGCGCGGCGGCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAAC
CATGGCCTTCGCTGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTG
CTGGCTACGACGCTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAG
TCGGCCGTCTTCGTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCACCTTCTTCGGCATGAAC
TTCTTCGCTATGGATCAGGGCAATAGTCGCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTC
GGCCTAACAATGGCCACCGTCGCCTTCTACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCG
CCCAGGGTGCCCAAGCTGGCCATCGGCCACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCG
GCCGACATACAGCTCCAGGGCATCATGGTTTGA
Gene >Ophio5|5224
ATGGACCATTCGTCAGAGCGCTATTTATCATCGCTTCAACGTCGAGACGAGCCAGAGCCTCTTCGTTCTCTTTAG
TCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCCAGCCCACTGTC
GCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAACGGAAGTTCCT
TCGAAAGGTATGAAAAAGAAAGACAGAAGACCCCCTCCCCCCATTTATCCACTCTCGGCTAAGAAAATAACATAC
ATACAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGATCTCAGCTTCATC
TACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTGGCCGGCGCGGCG
GCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAACCATGGCCTTCGC
TGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTGCTGGCTACGACG
CTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAGTCGGCCGTCTTC
GTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCGTTGGTCCCTCCCTCCTCTTACCCTCAGTG
GACGCTTGCTAACGCTCGCTCGCCCGCAGACCTTCTTCGGCATGAACTTCTTCGCTATGGATCAGGGCAATAGTC
GCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTCGGCCTAACAATGGCCACCGTCGCCTTCT
ACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCGCCCAGGGTGCCCAAGCTGGCCATCGGCC
ACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCGGCCGACATACAGCTCCAGGGCATCATGG
TTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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