© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5224 |
| Gene name | |
| Location | scaffold_421:3632..4687 |
| Strand | - |
| Gene length (bp) | 1055 |
| Transcript length (bp) | 858 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01544 | CorA | CorA-like Mg2+ transporter protein | 7.5E-12 | 99 | 230 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide|Transmembrane domain | 0.181 | 0.0561 | 0.0895 | 0.541 | 0.1859 | 0.0112 | 0.3993 | 0.3227 | 0.4457 | 0.0905 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 177 | 199 | 22 |
| 2 | 217 | 239 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5972 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5224 MDHSPRPHAHAHGLLRDCVSAAADSSPLSLHEIFFGAYIANWRPYIAFYERKFLRKANSISATYIEQPLSVKYED LSFIYSLENRFPAATSMLTAAQQALAGAAAMLRLQHPAESLDAVQNVFENHGLRCAAYARAADHLRQRSQTTAQL LATTLSQRDQVIAKEQNRNMLLLNKSAVFVTALTLVYAPASFIATFFGMNFFAMDQGNSRIVATPMIWIYLVATL GLTMATVAFYYLLVRYDEILFRLLAPRVPKLAIGHGLRNLTQRFTNTRQAADIQLQGIMV |
| Coding | >Ophio5|5224 ATGGACCATTCTCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCC AGCCCACTGTCGCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAA CGGAAGTTCCTTCGAAAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGAT CTCAGCTTCATCTACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTG GCCGGCGCGGCGGCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAAC CATGGCCTTCGCTGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTG CTGGCTACGACGCTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAG TCGGCCGTCTTCGTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCACCTTCTTCGGCATGAAC TTCTTCGCTATGGATCAGGGCAATAGTCGCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTC GGCCTAACAATGGCCACCGTCGCCTTCTACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCG CCCAGGGTGCCCAAGCTGGCCATCGGCCACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCG GCCGACATACAGCTCCAGGGCATCATGGTT |
| Transcript | >Ophio5|5224 ATGGACCATTCTCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCC AGCCCACTGTCGCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAA CGGAAGTTCCTTCGAAAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGAT CTCAGCTTCATCTACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTG GCCGGCGCGGCGGCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAAC CATGGCCTTCGCTGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTG CTGGCTACGACGCTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAG TCGGCCGTCTTCGTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCACCTTCTTCGGCATGAAC TTCTTCGCTATGGATCAGGGCAATAGTCGCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTC GGCCTAACAATGGCCACCGTCGCCTTCTACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCG CCCAGGGTGCCCAAGCTGGCCATCGGCCACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCG GCCGACATACAGCTCCAGGGCATCATGGTTTGA |
| Gene | >Ophio5|5224 ATGGACCATTCGTCAGAGCGCTATTTATCATCGCTTCAACGTCGAGACGAGCCAGAGCCTCTTCGTTCTCTTTAG TCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCCAGCCCACTGTC GCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAACGGAAGTTCCT TCGAAAGGTATGAAAAAGAAAGACAGAAGACCCCCTCCCCCCATTTATCCACTCTCGGCTAAGAAAATAACATAC ATACAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGATCTCAGCTTCATC TACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTGGCCGGCGCGGCG GCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAACCATGGCCTTCGC TGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTGCTGGCTACGACG CTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAGTCGGCCGTCTTC GTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCGTTGGTCCCTCCCTCCTCTTACCCTCAGTG GACGCTTGCTAACGCTCGCTCGCCCGCAGACCTTCTTCGGCATGAACTTCTTCGCTATGGATCAGGGCAATAGTC GCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTCGGCCTAACAATGGCCACCGTCGCCTTCT ACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCGCCCAGGGTGCCCAAGCTGGCCATCGGCC ACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCGGCCGACATACAGCTCCAGGGCATCATGG TTTGA |