Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5224
Gene name
Locationscaffold_421:3632..4687
Strand-
Gene length (bp)1055
Transcript length (bp)858
Coding sequence length (bp)855
Protein length (aa) 285

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01544 CorA CorA-like Mg2+ transporter protein 7.5E-12 99 230

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0046873 metal ion transmembrane transporter activity Yes
GO:0030001 metal ion transport Yes
GO:0055085 transmembrane transport Yes
GO:0015075 ion transmembrane transporter activity No
GO:0008150 biological_process No
GO:0051234 establishment of localization No
GO:0006810 transport No
GO:0051179 localization No
GO:0003674 molecular_function No
GO:0005215 transporter activity No
GO:0022890 inorganic cation transmembrane transporter activity No
GO:0022857 transmembrane transporter activity No
GO:0110165 cellular anatomical entity No
GO:0009987 cellular process No
GO:0005575 cellular_component No
GO:0008324 cation transmembrane transporter activity No
GO:0006811 ion transport No
GO:0006812 cation transport No
GO:0015318 inorganic molecular entity transmembrane transporter activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

Domain # Start End Length
1 177 199 22
2 217 239 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5224
MDHSPRPHAHAHGLLRDCVSAAADSSPLSLHEIFFGAYIANWRPYIAFYERKFLRKANSISATYIEQPLSVKYED
LSFIYSLENRFPAATSMLTAAQQALAGAAAMLRLQHPAESLDAVQNVFENHGLRCAAYARAADHLRQRSQTTAQL
LATTLSQRDQVIAKEQNRNMLLLNKSAVFVTALTLVYAPASFIATFFGMNFFAMDQGNSRIVATPMIWIYLVATL
GLTMATVAFYYLLVRYDEILFRLLAPRVPKLAIGHGLRNLTQRFTNTRQAADIQLQGIMV
Coding >Ophio5|5224
ATGGACCATTCTCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCC
AGCCCACTGTCGCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAA
CGGAAGTTCCTTCGAAAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGAT
CTCAGCTTCATCTACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTG
GCCGGCGCGGCGGCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAAC
CATGGCCTTCGCTGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTG
CTGGCTACGACGCTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAG
TCGGCCGTCTTCGTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCACCTTCTTCGGCATGAAC
TTCTTCGCTATGGATCAGGGCAATAGTCGCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTC
GGCCTAACAATGGCCACCGTCGCCTTCTACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCG
CCCAGGGTGCCCAAGCTGGCCATCGGCCACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCG
GCCGACATACAGCTCCAGGGCATCATGGTT
Transcript >Ophio5|5224
ATGGACCATTCTCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCC
AGCCCACTGTCGCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAA
CGGAAGTTCCTTCGAAAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGAT
CTCAGCTTCATCTACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTG
GCCGGCGCGGCGGCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAAC
CATGGCCTTCGCTGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTG
CTGGCTACGACGCTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAG
TCGGCCGTCTTCGTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCACCTTCTTCGGCATGAAC
TTCTTCGCTATGGATCAGGGCAATAGTCGCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTC
GGCCTAACAATGGCCACCGTCGCCTTCTACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCG
CCCAGGGTGCCCAAGCTGGCCATCGGCCACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCG
GCCGACATACAGCTCCAGGGCATCATGGTTTGA
Gene >Ophio5|5224
ATGGACCATTCGTCAGAGCGCTATTTATCATCGCTTCAACGTCGAGACGAGCCAGAGCCTCTTCGTTCTCTTTAG
TCCCCGGCCCCATGCCCACGCCCACGGCCTTCTAAGGGACTGCGTGAGCGCCGCAGCCGACTCCAGCCCACTGTC
GCTGCATGAAATCTTCTTCGGTGCCTATATTGCCAACTGGAGACCATACATAGCCTTTTACGAACGGAAGTTCCT
TCGAAAGGTATGAAAAAGAAAGACAGAAGACCCCCTCCCCCCATTTATCCACTCTCGGCTAAGAAAATAACATAC
ATACAGGCAAATTCCATCTCCGCCACCTACATCGAACAGCCGCTAAGCGTCAAATATGAGGATCTCAGCTTCATC
TACAGCCTGGAGAACAGATTCCCAGCCGCAACTAGCATGCTGACGGCGGCGCAGCAGGCTCTGGCCGGCGCGGCG
GCCATGCTGCGGCTCCAACACCCGGCCGAATCGCTTGATGCCGTCCAAAATGTCTTTGAAAACCATGGCCTTCGC
TGTGCTGCCTACGCCCGCGCGGCTGACCATCTTCGCCAGCGTTCACAAACGACGGCCCAACTGCTGGCTACGACG
CTTTCACAACGGGATCAGGTCATCGCCAAGGAGCAAAACAGGAACATGCTTCTGCTTAATAAGTCGGCCGTCTTC
GTAACTGCCCTAACCCTCGTCTATGCGCCGGCTTCCTTCATCGCCGTTGGTCCCTCCCTCCTCTTACCCTCAGTG
GACGCTTGCTAACGCTCGCTCGCCCGCAGACCTTCTTCGGCATGAACTTCTTCGCTATGGATCAGGGCAATAGTC
GCATCGTCGCCACCCCTATGATCTGGATCTACCTCGTCGCCACCCTCGGCCTAACAATGGCCACCGTCGCCTTCT
ACTACTTGCTGGTCCGATACGACGAAATCCTGTTCCGGCTACTCGCGCCCAGGGTGCCCAAGCTGGCCATCGGCC
ACGGCTTGAGAAATCTGACCCAGCGCTTCACAAATACCAGGCAGGCGGCCGACATACAGCTCCAGGGCATCATGG
TTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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