© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|52 |
| Gene name | |
| Location | scaffold_1:123775..125730 |
| Strand | - |
| Gene length (bp) | 1955 |
| Transcript length (bp) | 1656 |
| Coding sequence length (bp) | 1653 |
| Protein length (aa) | 551 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 4.9E-30 | 23 | 307 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 3.5E-08 | 54 | 198 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 11 | 494 | 3.0E-58 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 2 | 484 | 1.0E-40 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 1 | 461 | 1.0E-40 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 1 | 483 | 6.0E-38 |
| sp|P33733|TCR4_SALOR | Tetracycline resistance protein, class D OS=Salmonella ordonez GN=tetA PE=3 SV=1 | 17 | 173 | 3.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25351|YCR3_YEAST | Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2 | 11 | 494 | 3.0E-58 |
| sp|Q3EAQ5|PTR36_ARATH | Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2 | 2 | 484 | 1.0E-40 |
| sp|Q8RWN2|ZIF1_ARATH | Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2 | 1 | 461 | 1.0E-40 |
| sp|Q94BZ1|ZIFL1_ARATH | Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1 | 1 | 483 | 6.0E-38 |
| sp|P33733|TCR4_SALOR | Tetracycline resistance protein, class D OS=Salmonella ordonez GN=tetA PE=3 SV=1 | 17 | 173 | 3.0E-10 |
| sp|P02980|TCR2_ECOLX | Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1 | 18 | 173 | 7.0E-10 |
| sp|P51564|TCR8_PASMD | Tetracycline resistance protein, class H OS=Pasteurella multocida GN=tetA PE=3 SV=1 | 33 | 173 | 8.0E-10 |
| sp|Q5HHX4|NORA_STAAC | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain COL) GN=norA PE=3 SV=1 | 33 | 176 | 1.0E-08 |
| sp|P0A0J6|NORA_STAAW | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MW2) GN=norA PE=3 SV=1 | 33 | 176 | 1.0E-08 |
| sp|P0A0J7|NORA_STAAU | Quinolone resistance protein NorA OS=Staphylococcus aureus GN=norA PE=3 SV=1 | 33 | 176 | 1.0E-08 |
| sp|P0A0J5|NORA_STAAN | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain N315) GN=norA PE=3 SV=1 | 33 | 176 | 1.0E-08 |
| sp|P0A0J4|NORA_STAAM | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=norA PE=3 SV=1 | 33 | 176 | 1.0E-08 |
| sp|Q6GBD5|NORA_STAAS | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MSSA476) GN=norA PE=3 SV=1 | 33 | 176 | 1.0E-08 |
| sp|Q6GIU7|NORA_STAAR | Quinolone resistance protein NorA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1 | 33 | 176 | 2.0E-08 |
| sp|Q0P5M9|MFS10_BOVIN | Major facilitator superfamily domain-containing protein 10 OS=Bos taurus GN=MFSD10 PE=2 SV=1 | 56 | 244 | 1.0E-07 |
| sp|P0A4K5|PMRA_STRR6 | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1 | 33 | 167 | 4.0E-07 |
| sp|P0A4K4|PMRA_STRPN | Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1 | 33 | 167 | 4.0E-07 |
| sp|Q95R48|OCTL_DROME | Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2 | 60 | 292 | 4.0E-07 |
| sp|P02982|TCR1_ECOLX | Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2 | 12 | 165 | 5.0E-07 |
| sp|B4EYY4|MDTG_PROMH | Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1 | 30 | 176 | 1.0E-06 |
| sp|P02981|TCR3_ECOLX | Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1 | 33 | 173 | 1.0E-06 |
| sp|Q14728|MFS10_HUMAN | Major facilitator superfamily domain-containing protein 10 OS=Homo sapiens GN=MFSD10 PE=1 SV=1 | 56 | 224 | 3.0E-06 |
| sp|Q9D2V8|MFS10_MOUSE | Major facilitator superfamily domain-containing protein 10 OS=Mus musculus GN=Mfsd10 PE=1 SV=1 | 56 | 166 | 3.0E-06 |
| sp|Q07282|TCR5_ECOLX | Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1 | 33 | 173 | 4.0E-06 |
| sp|P36890|TCR_STAHY | Tetracycline resistance protein OS=Staphylococcus hyicus GN=tet PE=3 SV=1 | 37 | 175 | 4.0E-06 |
| sp|P0A4K6|TCR_STREE | Tetracycline resistance protein OS=Streptococcus pneumoniae GN=tet PE=3 SV=1 | 37 | 175 | 4.0E-06 |
| sp|P0A4K8|TCR_BACIU | Tetracycline resistance protein OS=Bacillus subtilis GN=tet PE=3 SV=1 | 37 | 175 | 4.0E-06 |
| sp|P0A4K7|TCR_BACCE | Tetracycline resistance protein OS=Bacillus cereus GN=tet PE=3 SV=1 | 37 | 175 | 4.0E-06 |
| sp|P07561|TCR_GEOSE | Tetracycline resistance protein OS=Geobacillus stearothermophilus GN=tet PE=3 SV=1 | 37 | 175 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008150 | biological_process | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0051179 | localization | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Lysosome/Vacuole | Transmembrane domain | 0.2214 | 0.1023 | 0.0613 | 0.2459 | 0.2049 | 0.0044 | 0.2036 | 0.5742 | 0.3299 | 0.0723 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 51 | 73 | 22 |
| 2 | 85 | 107 | 22 |
| 3 | 144 | 166 | 22 |
| 4 | 187 | 209 | 22 |
| 5 | 335 | 354 | 19 |
| 6 | 361 | 383 | 22 |
| 7 | 398 | 420 | 22 |
| 8 | 463 | 485 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3779 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|52 MTESAQLGPKLPVQQLVILVVARLAEPLAYTSIYPYLPEMIGDFGIPQVDIARWAGLITAVFAVSQGLAAVPWGR ASDRYGRKPIVLCGLASTMICFLIWGMSTSLTMAIVARAIQGAGSGNVAIIRTIVAEIVPVKELQPRAFSIMPLV WSIGSVVGPAFGGFFAQPASKYPDWFGQMEFFRRFPYALPNLIATIFFLFSATTTFLFLEESLSSKRGQPDVGLA LGRRLTRLFSRNSKAARTPLVDAEAPSAQDASHVPSQKLLPSEPPPGMKEVFKRQTIISLVAYTITSMHSVSFDQ NVTVFLNYPVMEHTPDNTRLPFCFNGGFGLKSGKIGIIFAIYGTTCGLIQFFLYPPLCKRFGVLKCWQFCSIAMP FIYFITPYASLFPTQQSRLTAMVAVLMLKGLVGIIAFPCITILFTNSCTSTRILGTVNGFATAFSGFARALGPAS TGFAFTWGAKHGCIAAAYYFLALVAALGAIPGFMVEDGDGPSAEAEPINVCRPRSESESTAGVDDLDDSVNTPLL AAANSRGYGARESRQRSAQGPFRQPS |
| Coding | >Ophio5|52 ATGACGGAATCAGCGCAACTGGGGCCAAAGCTGCCTGTCCAGCAGCTCGTCATCCTGGTCGTTGCGCGACTCGCC GAGCCCCTGGCGTACACATCCATCTACCCGTATCTGCCTGAGATGATCGGCGACTTTGGAATCCCCCAGGTCGAC ATCGCCCGCTGGGCCGGCCTCATCACCGCCGTCTTCGCCGTCAGCCAGGGTCTGGCCGCCGTTCCGTGGGGCCGT GCGTCTGATCGGTACGGGAGAAAGCCCATCGTCCTCTGTGGCCTCGCCAGCACCATGATCTGCTTCCTCATCTGG GGCATGTCCACCAGCTTGACCATGGCCATCGTTGCGCGCGCCATCCAGGGCGCGGGGAGCGGAAACGTCGCCATA ATCAGGACCATTGTGGCCGAGATTGTTCCCGTAAAGGAGTTGCAGCCCCGGGCCTTTTCCATCATGCCGTTGGTA TGGTCCATCGGCTCTGTCGTTGGGCCTGCTTTCGGAGGCTTCTTTGCCCAGCCGGCAAGTAAGTATCCCGACTGG TTCGGCCAGATGGAATTTTTTCGGCGCTTCCCGTATGCTCTACCCAACCTCATCGCCACCATCTTCTTCCTATTT TCCGCGACTACGACATTTCTTTTCCTCGAGGAATCTCTCTCGTCCAAGCGCGGCCAGCCAGACGTCGGCCTCGCC CTTGGCCGACGTCTCACTCGCCTGTTCTCGCGAAATTCGAAAGCGGCCCGAACGCCACTGGTGGATGCCGAGGCG CCCTCGGCGCAAGACGCAAGTCATGTCCCGTCGCAGAAGCTGCTGCCCTCGGAGCCGCCGCCGGGGATGAAGGAG GTTTTCAAACGCCAGACCATCATCAGCCTCGTGGCATACACTATTACGTCGATGCACTCGGTATCGTTCGATCAG AATGTCACCGTCTTCCTCAACTACCCCGTCATGGAGCACACTCCGGACAACACGCGGCTGCCCTTTTGCTTCAAC GGCGGCTTCGGGCTCAAGTCGGGCAAGATTGGCATCATTTTTGCCATCTACGGCACCACCTGCGGCCTCATCCAG TTCTTTTTATATCCGCCCCTGTGCAAGCGCTTCGGCGTCTTGAAGTGCTGGCAGTTCTGCTCAATCGCGATGCCC TTCATCTACTTCATCACGCCCTACGCCTCCCTATTTCCCACACAACAAAGTCGTCTGACGGCCATGGTCGCCGTC CTGATGCTGAAAGGCCTCGTCGGCATCATCGCCTTCCCCTGCATAACCATCCTCTTCACCAACTCGTGCACGTCG ACGCGCATCCTCGGCACCGTCAACGGCTTCGCCACCGCCTTTAGCGGCTTCGCCCGCGCCCTCGGCCCGGCATCG ACCGGCTTCGCCTTCACCTGGGGCGCCAAGCACGGCTGCATCGCAGCCGCGTATTACTTCCTCGCCCTCGTTGCT GCCCTCGGCGCCATCCCCGGCTTCATGGTCGAGGACGGTGACGGTCCGTCTGCCGAGGCCGAGCCCATCAACGTC TGTCGCCCTCGGTCCGAGTCCGAGTCGACCGCCGGAGTCGACGACCTTGACGACAGCGTCAACACCCCGCTGCTG GCTGCCGCGAACTCTCGCGGCTATGGCGCGCGCGAAAGCCGTCAGAGGTCTGCTCAGGGACCCTTTCGCCAGCCC TCT |
| Transcript | >Ophio5|52 ATGACGGAATCAGCGCAACTGGGGCCAAAGCTGCCTGTCCAGCAGCTCGTCATCCTGGTCGTTGCGCGACTCGCC GAGCCCCTGGCGTACACATCCATCTACCCGTATCTGCCTGAGATGATCGGCGACTTTGGAATCCCCCAGGTCGAC ATCGCCCGCTGGGCCGGCCTCATCACCGCCGTCTTCGCCGTCAGCCAGGGTCTGGCCGCCGTTCCGTGGGGCCGT GCGTCTGATCGGTACGGGAGAAAGCCCATCGTCCTCTGTGGCCTCGCCAGCACCATGATCTGCTTCCTCATCTGG GGCATGTCCACCAGCTTGACCATGGCCATCGTTGCGCGCGCCATCCAGGGCGCGGGGAGCGGAAACGTCGCCATA ATCAGGACCATTGTGGCCGAGATTGTTCCCGTAAAGGAGTTGCAGCCCCGGGCCTTTTCCATCATGCCGTTGGTA TGGTCCATCGGCTCTGTCGTTGGGCCTGCTTTCGGAGGCTTCTTTGCCCAGCCGGCAAGTAAGTATCCCGACTGG TTCGGCCAGATGGAATTTTTTCGGCGCTTCCCGTATGCTCTACCCAACCTCATCGCCACCATCTTCTTCCTATTT TCCGCGACTACGACATTTCTTTTCCTCGAGGAATCTCTCTCGTCCAAGCGCGGCCAGCCAGACGTCGGCCTCGCC CTTGGCCGACGTCTCACTCGCCTGTTCTCGCGAAATTCGAAAGCGGCCCGAACGCCACTGGTGGATGCCGAGGCG CCCTCGGCGCAAGACGCAAGTCATGTCCCGTCGCAGAAGCTGCTGCCCTCGGAGCCGCCGCCGGGGATGAAGGAG GTTTTCAAACGCCAGACCATCATCAGCCTCGTGGCATACACTATTACGTCGATGCACTCGGTATCGTTCGATCAG AATGTCACCGTCTTCCTCAACTACCCCGTCATGGAGCACACTCCGGACAACACGCGGCTGCCCTTTTGCTTCAAC GGCGGCTTCGGGCTCAAGTCGGGCAAGATTGGCATCATTTTTGCCATCTACGGCACCACCTGCGGCCTCATCCAG TTCTTTTTATATCCGCCCCTGTGCAAGCGCTTCGGCGTCTTGAAGTGCTGGCAGTTCTGCTCAATCGCGATGCCC TTCATCTACTTCATCACGCCCTACGCCTCCCTATTTCCCACACAACAAAGTCGTCTGACGGCCATGGTCGCCGTC CTGATGCTGAAAGGCCTCGTCGGCATCATCGCCTTCCCCTGCATAACCATCCTCTTCACCAACTCGTGCACGTCG ACGCGCATCCTCGGCACCGTCAACGGCTTCGCCACCGCCTTTAGCGGCTTCGCCCGCGCCCTCGGCCCGGCATCG ACCGGCTTCGCCTTCACCTGGGGCGCCAAGCACGGCTGCATCGCAGCCGCGTATTACTTCCTCGCCCTCGTTGCT GCCCTCGGCGCCATCCCCGGCTTCATGGTCGAGGACGGTGACGGTCCGTCTGCCGAGGCCGAGCCCATCAACGTC TGTCGCCCTCGGTCCGAGTCCGAGTCGACCGCCGGAGTCGACGACCTTGACGACAGCGTCAACACCCCGCTGCTG GCTGCCGCGAACTCTCGCGGCTATGGCGCGCGCGAAAGCCGTCAGAGGTCTGCTCAGGGACCCTTTCGCCAGCCC TCTTAG |
| Gene | >Ophio5|52 ATGACGGAATCAGCGCAACTGGGGCCAAAGCTGCCTGTCCAGCAGCTCGTCATCCTGGGTGAGGCCGCCGCTTCC CGACGAAGTCAGGTCCAAGTTCATCTACCTCTTTTGTGCTGACTCTCTGTTCGCAGTCGTTGCGCGACTCGCCGA GCCCCTGGCGTACACATCCATCTACCCGTATCTGCCTGAGATGATCGGCGACTTTGGAATCCCCCAGGTCGACAT CGCCCGCTGGGCCGGCCTCATCACCGCCGTCTTCGCCGTCAGCCAGGGTCTGGCCGCCGTTCCGTGGGGCCGTGC GTCTGATCGGTACGGGAGAAAGCCCATCGTCCTCTGTGGCCTCGCCAGCACCATGATCTGCTTCCTCATCTGGGG CATGTCCACCAGCTTGACCATGGCCATCGTTGCGCGCGCCATCCAGGGCGCGGGGAGCGGAAACGGTACGTGAAC CCGCCCATGACAACTCGGACTGTCGCTAACCACGGTTCGCAGTCGCCATAATCAGGACCATTGTGGCCGAGATTG TTCCCGTAAAGGAGTTGCAGCCCCGGGCCTTTTCCATCATGCCGTTGGTATGGTCCATCGGCTCTGTCGTTGGGC CTGCTTTCGGAGGCTTCTTTGCCCAGCCGGCAAGTAAGTATCCCGACTGGTTCGGCCAGATGGAATTTTTTCGGC GCTTCCCGTATGCTCTACCCAACCTCATCGCCACCATCTTCTTCCTATTTTCCGCGACTACGACATTTCTTTTCC TCGAGGTACGCGCCCCCCTGGCCCTTCCCCCCTTTTTACCCCGTGGAGCCAACGTGGTCGGGTCTGAACGTTGTC AAGGAATCTCTCTCGTCCAAGCGCGGCCAGCCAGACGTCGGCCTCGCCCTTGGCCGACGTCTCACTCGCCTGTTC TCGCGAAATTCGAAAGCGGCCCGAACGCCACTGGTGGATGCCGAGGCGCCCTCGGCGCAAGACGCAAGTCATGTC CCGTCGCAGAAGCTGCTGCCCTCGGAGCCGCCGCCGGGGATGAAGGAGGTTTTCAAACGCCAGACCATCATCAGC CTCGTGGCATACACTATTACGTCGATGCACTCGGTATCGTTCGATCAGAATGTCACCGTCTTCCTCAACTACCCC GTCATGGAGCACACTCCGGACAACACGCGGCTGCCCTTTTGCTTCAACGGCGGCTTCGGGCTCAAGTCGGGCAAG ATTGGCATCATTTTTGCCATCTACGGCACCACCTGCGGCCTCATCCAGTTCTTTTTATATCCGCCCCTGTGCAAG CGCTTCGGCGTCTTGAAGTGCTGGCAGTTCTGCTGTGGGTTGTCCCCCCTTTCCCCCCCCCCCCTTTTTCTTTCC GTCCCGCCTGTACGCCGAGGTGTCCATCTCGAATGCGGTTGACGCGAGACACCTGCGCAGCAATCGCGATGCCCT TCATCTACTTCATCACGCCCTACGCCTCCCTATTTCCCACACAACAAAGTCGTCTGACGGCCATGGTCGCCGTCC TGATGCTGAAAGGCCTCGTCGGCATCATCGCCTTCCCCTGCATAACCATCCTCTTCACCAACTCGTGCACGTCGA CGCGCATCCTCGGCACCGTCAACGGCTTCGCCACCGCCTTTAGCGGCTTCGCCCGCGCCCTCGGCCCGGCATCGA CCGGCTTCGCCTTCACCTGGGGCGCCAAGCACGGCTGCATCGCAGCCGCGTATTACTTCCTCGCCCTCGTTGCTG CCCTCGGCGCCATCCCCGGCTTCATGGTCGAGGACGGTGACGGTCCGTCTGCCGAGGCCGAGCCCATCAACGTCT GTCGCCCTCGGTCCGAGTCCGAGTCGACCGCCGGAGTCGACGACCTTGACGACAGCGTCAACACCCCGCTGCTGG CTGCCGCGAACTCTCGCGGCTATGGCGCGCGCGAAAGCCGTCAGAGGTCTGCTCAGGGACCCTTTCGCCAGCCCT CTTAG |