Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5122
Gene name
Locationscaffold_411:1781..2121
Strand-
Gene length (bp)340
Transcript length (bp)216
Coding sequence length (bp)213
Protein length (aa) 71

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 30 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 0.0 0.0 0.0
CcL In ants, during behavior modification 0.0 0.0 0.0
CcD In ants, recently dead 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 1.0 no
SC16a CcD 1.0 no
CcL CcD 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5122
MGMTTVHVPLRALGCAVGVPLLALLAAEGDRVSVVEAARRASWAHRRTVPVRVSPERFSQFPPTRVLSSTG
Coding >Ophio5|5122
ATGGGGATGACTACTGTACATGTCCCCCTCAGGGCGCTAGGCTGCGCTGTGGGTGTGCCGCTCCTGGCGCTACTT
GCGGCTGAGGGCGATCGGGTCAGTGTGGTGGAGGCGGCGCGTCGCGCGTCTTGGGCCCATCGGAGAACTGTACCG
GTACGAGTGTCGCCGGAACGCTTTAGCCAATTTCCACCGACTCGGGTCCTCTCCAGCACAGGT
Transcript >Ophio5|5122
ATGGGGATGACTACTGTACATGTCCCCCTCAGGGCGCTAGGCTGCGCTGTGGGTGTGCCGCTCCTGGCGCTACTT
GCGGCTGAGGGCGATCGGGTCAGTGTGGTGGAGGCGGCGCGTCGCGCGTCTTGGGCCCATCGGAGAACTGTACCG
GTACGAGTGTCGCCGGAACGCTTTAGCCAATTTCCACCGACTCGGGTCCTCTCCAGCACAGGTTGA
Gene >Ophio5|5122
ATGGGGATGACGTTACCGAGAGAAATGACGGTGGAATGTTCCGTTGACGCTTTGGCTCCACGCTCCGCAGTACTG
TACATGTCCCCCTCAGGGCGCTAGGCTGCGCTGTGGGTGTGCCGCTCCTGGCGCTACTTGCGGCTGAGGGCGATC
GGGTCAGTGTGGTGGAGGCGGCGCGTCGCGCGTCTTGGGCCCATCGGAGAACTGTACCGGTACGAGTGTCGCCGG
AACGCTTTAGCCAATTTCCACCGACTCGGGTCCTCTCCAGCACAGGTAGGGCTCGTCTCGTCTCCTTCTTCCCAT
GACATTGATGCCGTCTTCCTCACCTACCTACCTAGGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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