© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5120 |
| Gene name | |
| Location | scaffold_410:14505..15201 |
| Strand | - |
| Gene length (bp) | 696 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 693 |
| Protein length (aa) | 231 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02535 | Zip | ZIP Zinc transporter | 2.7E-35 | 32 | 227 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 16 | 231 | 7.0E-37 |
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 37 | 231 | 7.0E-33 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 30 | 231 | 1.0E-29 |
| sp|Q8W246|ZIP7_ARATH | Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1 | 22 | 231 | 2.0E-25 |
| sp|Q75HB1|IRT1_ORYSJ | Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1 | 53 | 231 | 7.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P32804|ZRT1_YEAST | Zinc-regulated transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT1 PE=1 SV=1 | 16 | 231 | 7.0E-37 |
| sp|Q12436|ZRT2_YEAST | Zinc-regulated transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRT2 PE=1 SV=1 | 37 | 231 | 7.0E-33 |
| sp|O94639|ZRT1_SCHPO | Zinc-regulated transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrt1 PE=1 SV=1 | 30 | 231 | 1.0E-29 |
| sp|Q8W246|ZIP7_ARATH | Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1 | 22 | 231 | 2.0E-25 |
| sp|Q75HB1|IRT1_ORYSJ | Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1 | 53 | 231 | 7.0E-24 |
| sp|O23039|ZIP5_ARATH | Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1 | 54 | 231 | 4.0E-22 |
| sp|Q6L8G1|IRT2_ORYSJ | Fe(2+) transport protein 2 OS=Oryza sativa subsp. japonica GN=IRT2 PE=2 SV=1 | 28 | 231 | 4.0E-22 |
| sp|Q8W245|ZIP10_ARATH | Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=1 SV=2 | 59 | 231 | 4.0E-22 |
| sp|Q6L8G0|ZIP5_ORYSJ | Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1 | 23 | 231 | 7.0E-22 |
| sp|Q9SLG3|ZIP3_ARATH | Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1 | 56 | 231 | 2.0E-21 |
| sp|Q38856|IRT1_ARATH | Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2 | 56 | 231 | 4.0E-21 |
| sp|O04089|ZIP4_ARATH | Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1 | 78 | 231 | 5.0E-21 |
| sp|A3BI11|ZIP8_ORYSJ | Zinc transporter 8 OS=Oryza sativa subsp. japonica GN=ZIP8 PE=2 SV=1 | 71 | 231 | 6.0E-21 |
| sp|Q8S3W4|ZIP8_ARATH | Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1 | 38 | 231 | 2.0E-20 |
| sp|Q7XLD4|ZIP3_ORYSJ | Zinc transporter 3 OS=Oryza sativa subsp. japonica GN=ZIP3 PE=1 SV=2 | 71 | 231 | 9.0E-20 |
| sp|Q5Z653|ZIP10_ORYSJ | Zinc transporter 10 OS=Oryza sativa subsp. japonica GN=ZIP10 PE=3 SV=2 | 78 | 198 | 1.0E-19 |
| sp|O82643|ZIP9_ARATH | Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1 | 78 | 231 | 2.0E-19 |
| sp|Q6L8F7|ZIP7_ORYSJ | Zinc transporter 7 OS=Oryza sativa subsp. japonica GN=ZIP7 PE=2 SV=1 | 78 | 231 | 3.0E-19 |
| sp|O81850|IRT2_ARATH | Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1 | 49 | 231 | 4.0E-19 |
| sp|Q8LE59|IRT3_ARATH | Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=3 | 78 | 231 | 4.0E-19 |
| sp|Q6L8F9|ZIP6_ORYSJ | Zinc transporter 6 OS=Oryza sativa subsp. japonica GN=ZIP6 PE=2 SV=1 | 68 | 231 | 5.0E-19 |
| sp|O81123|ZIP1_ARATH | Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1 | 64 | 231 | 2.0E-18 |
| sp|O64738|ZIP6_ARATH | Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=3 SV=1 | 54 | 231 | 9.0E-18 |
| sp|Q6ZJ91|ZIP4_ORYSJ | Zinc transporter 4 OS=Oryza sativa subsp. japonica GN=ZIP4 PE=2 SV=1 | 53 | 231 | 8.0E-17 |
| sp|Q9FIS2|ZIP12_ARATH | Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=3 SV=1 | 71 | 231 | 3.0E-16 |
| sp|Q0DHE3|ZIP9_ORYSJ | Zinc transporter 9 OS=Oryza sativa subsp. japonica GN=ZIP9 PE=3 SV=3 | 105 | 231 | 1.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0046873 | metal ion transmembrane transporter activity | Yes |
| GO:0030001 | metal ion transport | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0003674 | molecular_function | No |
| GO:0005215 | transporter activity | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0006812 | cation transport | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 76 | 98 | 22 |
| 2 | 102 | 124 | 22 |
| 3 | 137 | 159 | 22 |
| 4 | 169 | 191 | 22 |
| 5 | 211 | 230 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| SC16a | Pure fungal culture | 28.38 | 11.23 | 45.53 |
| CcL | In ants, during behavior modification | 12.60 | 3.16 | 22.05 |
| CcD | In ants, recently dead | 10.17 | 2.77 | 17.56 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| SC16a | CcL | 0.016619 | yes |
| SC16a | CcD | 0.001437 | yes |
| CcL | CcD | 0.610199 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5120 MGSRSPRSTTLALGLTQLKNSPVVEGSNAQQFHQHDPARGSGSEPKSDPDECAGADSTESQQISPELARRKERLQ CILLEMGILFHSIFIGMAVSVSVGADFVVLLIAIVFHQTFEGLALGARISAIEWGSKRWQPWCMALAYGCTTPLG QAIGLATHTLYSPDSEIGLIVVGVMNAISAGLLTFASLVELLSEDFLSDHSWRILRGKQRVIACVLVFFGAFFMS LVGAWA |
| Coding | >Ophio5|5120 ATGGGCTCGCGGAGCCCTCGGTCGACGACGCTGGCGCTGGGCCTGACGCAGCTCAAGAACAGCCCCGTCGTCGAG GGCAGCAACGCCCAGCAATTTCATCAGCATGACCCCGCTCGGGGCAGCGGCTCCGAGCCCAAGTCGGACCCGGAC GAGTGTGCTGGGGCCGACTCAACCGAGAGCCAGCAGATATCGCCCGAATTGGCACGCCGCAAAGAGCGTCTCCAG TGCATCCTCCTCGAGATGGGCATTCTGTTCCACAGCATCTTCATCGGCATGGCCGTCAGCGTCTCCGTCGGCGCA GACTTTGTCGTCCTCCTCATCGCCATCGTCTTCCACCAGACCTTCGAGGGTCTCGCCCTGGGAGCCCGCATCTCG GCCATCGAATGGGGCTCCAAGAGGTGGCAACCCTGGTGCATGGCTCTCGCCTACGGCTGCACAACGCCCCTAGGC CAGGCCATCGGCTTAGCCACACATACGCTGTATAGTCCGGACTCGGAGATTGGGCTCATCGTCGTCGGCGTCATG AACGCCATCTCGGCCGGCCTGTTGACCTTTGCATCGCTCGTCGAGCTGCTGTCCGAGGACTTTCTCAGCGACCAT AGCTGGCGCATCCTTCGGGGGAAGCAACGCGTCATCGCCTGCGTCCTCGTCTTTTTTGGCGCCTTTTTCATGAGC CTTGTTGGTGCCTGGGCG |
| Transcript | >Ophio5|5120 ATGGGCTCGCGGAGCCCTCGGTCGACGACGCTGGCGCTGGGCCTGACGCAGCTCAAGAACAGCCCCGTCGTCGAG GGCAGCAACGCCCAGCAATTTCATCAGCATGACCCCGCTCGGGGCAGCGGCTCCGAGCCCAAGTCGGACCCGGAC GAGTGTGCTGGGGCCGACTCAACCGAGAGCCAGCAGATATCGCCCGAATTGGCACGCCGCAAAGAGCGTCTCCAG TGCATCCTCCTCGAGATGGGCATTCTGTTCCACAGCATCTTCATCGGCATGGCCGTCAGCGTCTCCGTCGGCGCA GACTTTGTCGTCCTCCTCATCGCCATCGTCTTCCACCAGACCTTCGAGGGTCTCGCCCTGGGAGCCCGCATCTCG GCCATCGAATGGGGCTCCAAGAGGTGGCAACCCTGGTGCATGGCTCTCGCCTACGGCTGCACAACGCCCCTAGGC CAGGCCATCGGCTTAGCCACACATACGCTGTATAGTCCGGACTCGGAGATTGGGCTCATCGTCGTCGGCGTCATG AACGCCATCTCGGCCGGCCTGTTGACCTTTGCATCGCTCGTCGAGCTGCTGTCCGAGGACTTTCTCAGCGACCAT AGCTGGCGCATCCTTCGGGGGAAGCAACGCGTCATCGCCTGCGTCCTCGTCTTTTTTGGCGCCTTTTTCATGAGC CTTGTTGGTGCCTGGGCGTAA |
| Gene | >Ophio5|5120 ATGGGCTCGCGGAGCCCTCGGTCGACGACGCTGGCGCTGGGCCTGACGCAGCTCAAGAACAGCCCCGTCGTCGAG GGCAGCAACGCCCAGCAATTTCATCAGCATGACCCCGCTCGGGGCAGCGGCTCCGAGCCCAAGTCGGACCCGGAC GAGTGTGCTGGGGCCGACTCAACCGAGAGCCAGCAGATATCGCCCGAATTGGCACGCCGCAAAGAGCGTCTCCAG TGCATCCTCCTCGAGATGGGCATTCTGTTCCACAGCATCTTCATCGGCATGGCCGTCAGCGTCTCCGTCGGCGCA GACTTTGTCGTCCTCCTCATCGCCATCGTCTTCCACCAGACCTTCGAGGGTCTCGCCCTGGGAGCCCGCATCTCG GCCATCGAATGGGGCTCCAAGAGGTGGCAACCCTGGTGCATGGCTCTCGCCTACGGCTGCACAACGCCCCTAGGC CAGGCCATCGGCTTAGCCACACATACGCTGTATAGTCCGGACTCGGAGATTGGGCTCATCGTCGTCGGCGTCATG AACGCCATCTCGGCCGGCCTGTTGACCTTTGCATCGCTCGTCGAGCTGCTGTCCGAGGACTTTCTCAGCGACCAT AGCTGGCGCATCCTTCGGGGGAAGCAACGCGTCATCGCCTGCGTCCTCGTCTTTTTTGGCGCCTTTTTCATGAGC CTTGTTGGTGCCTGGGCGTAA |