© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|512 |
| Gene name | |
| Location | scaffold_112:31519..33896 |
| Strand | + |
| Gene length (bp) | 2377 |
| Transcript length (bp) | 1506 |
| Coding sequence length (bp) | 1503 |
| Protein length (aa) | 501 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00098 | zf-CCHC | Zinc knuckle | 6.1E-08 | 92 | 107 |
| PF00098 | zf-CCHC | Zinc knuckle | 2.9E-06 | 113 | 129 |
| PF00098 | zf-CCHC | Zinc knuckle | 1.1E-04 | 284 | 299 |
| PF00098 | zf-CCHC | Zinc knuckle | 5.1E-06 | 311 | 327 |
| PF00098 | zf-CCHC | Zinc knuckle | 3.9E-04 | 334 | 348 |
| PF00098 | zf-CCHC | Zinc knuckle | 8.0E-08 | 358 | 374 |
| PF00098 | zf-CCHC | Zinc knuckle | 5.0E-07 | 378 | 395 |
| PF00098 | zf-CCHC | Zinc knuckle | 4.9E-06 | 403 | 419 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 3.4E-02 | 92 | 107 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.1E+00 | 132 | 149 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 8.2E-02 | 281 | 298 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 1.1E+00 | 310 | 326 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 2.2E+00 | 334 | 349 |
| PF14392 | zf-CCHC_4 | Zinc knuckle | 5.8E+00 | 379 | 394 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 284 | 399 | 3.0E-22 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 267 | 453 | 8.0E-20 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 284 | 448 | 3.0E-19 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 283 | 419 | 8.0E-19 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 311 | 441 | 3.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 284 | 399 | 3.0E-22 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 267 | 453 | 8.0E-20 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 284 | 448 | 3.0E-19 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 283 | 419 | 8.0E-19 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 311 | 441 | 3.0E-18 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 311 | 441 | 3.0E-18 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 311 | 441 | 3.0E-18 |
| sp|Q3T0Q6|CNBP_BOVIN | Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 | 311 | 441 | 3.0E-18 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 311 | 441 | 3.0E-18 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 284 | 419 | 5.0E-18 |
| sp|O42395|CNBP_CHICK | Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 | 311 | 441 | 6.0E-18 |
| sp|O42395|CNBP_CHICK | Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 | 283 | 417 | 8.0E-18 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 283 | 417 | 9.0E-18 |
| sp|Q3T0Q6|CNBP_BOVIN | Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 | 283 | 417 | 2.0E-17 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 283 | 417 | 2.0E-17 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 283 | 417 | 2.0E-17 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 283 | 417 | 2.0E-17 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 308 | 443 | 5.0E-17 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 284 | 443 | 2.0E-16 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 312 | 442 | 2.0E-16 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 92 | 375 | 3.0E-16 |
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 334 | 447 | 8.0E-16 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 282 | 420 | 3.0E-15 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 280 | 441 | 4.0E-15 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 284 | 418 | 1.0E-14 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 311 | 421 | 1.0E-14 |
| sp|O42395|CNBP_CHICK | Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 | 312 | 443 | 2.0E-14 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 359 | 445 | 1.0E-13 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 276 | 374 | 6.0E-13 |
| sp|Q3T0Q6|CNBP_BOVIN | Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 | 335 | 443 | 7.0E-13 |
| sp|Q04832|HEXP_LEIMA | DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1 | 108 | 393 | 1.0E-12 |
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 377 | 444 | 2.0E-12 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 312 | 445 | 3.0E-12 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 312 | 445 | 3.0E-12 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 312 | 445 | 3.0E-12 |
| sp|Q8T8R1|Y3800_DROME | CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1 | 281 | 395 | 7.0E-12 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 334 | 431 | 5.0E-11 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 284 | 375 | 8.0E-11 |
| sp|Q94C69|CSP3_ARATH | Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1 | 284 | 417 | 9.0E-11 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 284 | 397 | 1.0E-10 |
| sp|Q8T8R1|Y3800_DROME | CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1 | 329 | 443 | 2.0E-10 |
| sp|O42395|CNBP_CHICK | Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 | 354 | 456 | 4.0E-10 |
| sp|Q3T0Q6|CNBP_BOVIN | Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 | 354 | 456 | 1.0E-09 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 283 | 377 | 2.0E-09 |
| sp|Q94C69|CSP3_ARATH | Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1 | 284 | 418 | 3.0E-09 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 359 | 448 | 5.0E-09 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 335 | 445 | 6.0E-09 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 354 | 456 | 7.0E-09 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 354 | 456 | 8.0E-09 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 354 | 456 | 8.0E-09 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 354 | 456 | 8.0E-09 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 356 | 443 | 1.0E-08 |
| sp|Q9HFF2|YL92_SCHPO | Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC683.02c PE=3 SV=1 | 312 | 402 | 2.0E-08 |
| sp|Q8T8R1|Y3800_DROME | CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster GN=CG3800 PE=1 SV=1 | 284 | 378 | 4.0E-08 |
| sp|Q65XV7|RFA1C_ORYSJ | Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 | 334 | 418 | 6.0E-08 |
| sp|A1L2T6|ZCHC7_XENLA | Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis GN=zcchc7 PE=2 SV=2 | 326 | 451 | 6.0E-08 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 92 | 163 | 1.0E-07 |
| sp|P05895|POL_SIVVT | Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) GN=gag-pol PE=3 SV=2 | 308 | 376 | 1.0E-07 |
| sp|P62634|CNBP_RAT | Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1 | 92 | 152 | 1.0E-07 |
| sp|Q5R5R5|CNBP_PONAB | Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1 | 92 | 152 | 1.0E-07 |
| sp|P62633|CNBP_HUMAN | Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1 | 92 | 152 | 1.0E-07 |
| sp|Q3T0Q6|CNBP_BOVIN | Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1 | 92 | 152 | 1.0E-07 |
| sp|Q966L9|GLH2_CAEEL | ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2 PE=1 SV=1 | 312 | 396 | 2.0E-07 |
| sp|Q8N567|ZCHC9_HUMAN | Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens GN=ZCCHC9 PE=2 SV=2 | 310 | 403 | 2.0E-07 |
| sp|P34689|GLH1_CAEEL | ATP-dependent RNA helicase glh-1 OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3 | 312 | 396 | 3.0E-07 |
| sp|P53849|GIS2_YEAST | Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1 | 378 | 441 | 4.0E-07 |
| sp|Q8R1J3|ZCHC9_MOUSE | Zinc finger CCHC domain-containing protein 9 OS=Mus musculus GN=Zcchc9 PE=2 SV=2 | 266 | 403 | 4.0E-07 |
| sp|Q9P795|AIR1_SCHPO | Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=air1 PE=1 SV=2 | 283 | 396 | 4.0E-07 |
| sp|Q9P795|AIR1_SCHPO | Protein air1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=air1 PE=1 SV=2 | 333 | 418 | 4.0E-07 |
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 93 | 152 | 5.0E-07 |
| sp|O65639|CSP1_ARATH | Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1 | 82 | 150 | 5.0E-07 |
| sp|P27980|POL_SIVVG | Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM3) GN=gag-pol PE=3 SV=2 | 308 | 376 | 6.0E-07 |
| sp|A1L2T6|ZCHC7_XENLA | Zinc finger CCHC domain-containing protein 7 OS=Xenopus laevis GN=zcchc7 PE=2 SV=2 | 270 | 419 | 7.0E-07 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 93 | 152 | 1.0E-06 |
| sp|Q8NIW7|BBP_NEUCR | Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bbp-1 PE=3 SV=1 | 215 | 373 | 1.0E-06 |
| sp|P27973|POL_SIVV1 | Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM155) GN=gag-pol PE=3 SV=2 | 93 | 127 | 2.0E-06 |
| sp|P27972|GAG_SIVV1 | Gag polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM155) GN=gag PE=3 SV=1 | 93 | 127 | 2.0E-06 |
| sp|Q4WXV6|BBP_ASPFU | Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3 SV=1 | 232 | 373 | 2.0E-06 |
| sp|Q12476|AIR2_YEAST | Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR2 PE=1 SV=1 | 271 | 397 | 3.0E-06 |
| sp|P53996|CNBP_MOUSE | Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2 | 63 | 155 | 3.0E-06 |
| sp|O42395|CNBP_CHICK | Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1 | 63 | 155 | 3.0E-06 |
| sp|P36627|BYR3_SCHPO | Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 | 93 | 148 | 3.0E-06 |
| sp|Q94C69|CSP3_ARATH | Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1 | 335 | 441 | 5.0E-06 |
| sp|Q12476|AIR2_YEAST | Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR2 PE=1 SV=1 | 358 | 441 | 5.0E-06 |
| sp|P27978|GAG_SIVVG | Gag polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM3) GN=gag PE=3 SV=1 | 93 | 127 | 5.0E-06 |
| sp|P05887|GAG_HV1C4 | Gag polyprotein OS=Human immunodeficiency virus type 1 group M subtype B (isolate CDC-451) GN=gag PE=3 SV=3 | 264 | 400 | 5.0E-06 |
| sp|P05895|POL_SIVVT | Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) GN=gag-pol PE=3 SV=2 | 93 | 127 | 6.0E-06 |
| sp|P27980|POL_SIVVG | Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM3) GN=gag-pol PE=3 SV=2 | 93 | 127 | 6.0E-06 |
| sp|Q4WXV6|BBP_ASPFU | Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3 SV=1 | 92 | 130 | 6.0E-06 |
| sp|P05895|POL_SIVVT | Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet (isolate AGM TYO-1) GN=gag-pol PE=3 SV=2 | 357 | 446 | 7.0E-06 |
| sp|Q8WW36|ZCH13_HUMAN | Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens GN=ZCCHC13 PE=1 SV=1 | 93 | 152 | 7.0E-06 |
| sp|O76743|GLH4_CAEEL | ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2 | 92 | 152 | 7.0E-06 |
| sp|Q65XV7|RFA1C_ORYSJ | Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 | 312 | 373 | 8.0E-06 |
| sp|P40507|AIR1_YEAST | Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIR1 PE=1 SV=1 | 284 | 419 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003676 | nucleic acid binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0046914 | transition metal ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.6341 | 0.5003 | 0.1268 | 0.0759 | 0.1816 | 0.0627 | 0.198 | 0.1104 | 0.1791 | 0.0036 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Zinc finger, CCHC-type |
| Orthofinder run ID | 4 |
| Orthogroup | 4628 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|512 MQLPESLPGEDWESSGGLDASGRQNALRLALWPARKIKTLHFNRNAFHRCIFSSMFWDNPSTAADADATEANGGH DSSRGPDMAENGAGTGACYNCGEIGHRAADCPTPREVTCRYCNQPGHMVKDCPEKPAMMCENCGEEGHTKNRCEN ARKINRDHVATLSPDDAWAKIKRAVAERDMDDVKEAVQEYVKALEGAVTYRDLQEGLINEGINLFIIGIERPLAP VFTNMDLQGNMGKKFSISFRFSEKPDRPREAEAFPKSRDELLARLEDAGEVVNNGRSLCHNCGELGHVAKYCTQE RVDKPEGPKITCTNCGEDGHRLRDCPQPRVDRFACRNCGKSGHKATDCEEPANLDNVECRKCGETGHFSRDCPQA GPRGCRNCGQEGHIAKDCDQPRNMDNVICRNCEKTGHVSRDCPEPKDWSKVQCSNCQQYGHTKVRCQQPPAESEA FQDGGFDAAADNAGEPVNDTWGNSGAPATAANVAASGPRKEAMCVGLGPTD |
| Coding | >Ophio5|512 ATGCAGCTGCCTGAATCTCTGCCTGGCGAGGATTGGGAAAGCTCCGGTGGCCTTGACGCCTCAGGCCGCCAGAAC GCCCTACGGCTTGCACTGTGGCCGGCTCGGAAAATTAAAACCTTGCACTTCAACCGAAACGCCTTCCATCGTTGC ATTTTTTCCAGCATGTTCTGGGACAACCCGTCCACGGCGGCGGACGCCGATGCCACTGAGGCCAACGGTGGGCAT GATTCTTCCCGAGGCCCCGACATGGCCGAGAACGGTGCTGGGACGGGTGCATGCTACAACTGTGGCGAGATCGGA CATAGGGCCGCCGACTGCCCAACTCCTCGGGAGGTAACTTGTCGGTACTGCAATCAGCCCGGCCACATGGTCAAG GATTGCCCTGAGAAGCCAGCCATGATGTGTGAGAATTGTGGCGAAGAAGGTCACACGAAGAACAGGTGTGAGAAC GCCCGAAAGATCAATCGTGATCATGTTGCCACGCTGTCCCCGGACGATGCCTGGGCCAAGATCAAGCGCGCCGTC GCTGAGCGGGACATGGACGACGTCAAGGAAGCTGTTCAAGAGTATGTTAAGGCTCTTGAAGGCGCCGTGACTTAC CGAGACCTTCAGGAGGGCTTAATCAATGAGGGTATCAACCTCTTCATCATCGGCATCGAGCGGCCCCTCGCCCCG GTCTTCACCAACATGGACTTACAGGGGAACATGGGCAAGAAGTTCAGTATCTCCTTCCGCTTTTCCGAGAAACCC GATCGTCCTCGTGAGGCTGAGGCGTTTCCAAAGAGTCGCGACGAGCTACTGGCTCGCCTCGAAGACGCCGGCGAG GTCGTCAACAACGGGCGCTCGCTCTGCCACAACTGCGGAGAATTGGGACACGTTGCGAAATATTGCACCCAGGAA AGGGTGGACAAGCCCGAGGGACCTAAGATTACGTGCACAAATTGCGGAGAGGATGGCCATCGTCTTCGGGATTGT CCCCAGCCAAGGGTGGACAGATTTGCCTGCCGCAACTGCGGCAAATCCGGCCACAAGGCGACGGACTGTGAGGAG CCTGCCAACCTTGACAACGTCGAGTGCCGCAAATGCGGCGAAACGGGACACTTCTCTCGAGATTGTCCTCAGGCC GGCCCTCGAGGCTGTCGCAACTGCGGCCAGGAAGGCCACATCGCAAAAGATTGCGACCAGCCAAGAAACATGGAC AATGTCATCTGTCGCAACTGCGAAAAGACAGGCCACGTGAGCCGAGACTGCCCGGAGCCGAAAGACTGGAGCAAG GTCCAGTGCAGCAATTGCCAGCAGTACGGCCACACCAAGGTCCGCTGCCAGCAGCCGCCGGCGGAATCCGAGGCT TTCCAGGACGGGGGATTCGACGCCGCCGCAGACAATGCCGGTGAACCCGTCAACGACACATGGGGAAACTCAGGT GCTCCAGCGACCGCGGCGAACGTGGCGGCTTCTGGTCCCCGAAAAGAGGCCATGTGTGTCGGGCTCGGGCCTACG GAT |
| Transcript | >Ophio5|512 ATGCAGCTGCCTGAATCTCTGCCTGGCGAGGATTGGGAAAGCTCCGGTGGCCTTGACGCCTCAGGCCGCCAGAAC GCCCTACGGCTTGCACTGTGGCCGGCTCGGAAAATTAAAACCTTGCACTTCAACCGAAACGCCTTCCATCGTTGC ATTTTTTCCAGCATGTTCTGGGACAACCCGTCCACGGCGGCGGACGCCGATGCCACTGAGGCCAACGGTGGGCAT GATTCTTCCCGAGGCCCCGACATGGCCGAGAACGGTGCTGGGACGGGTGCATGCTACAACTGTGGCGAGATCGGA CATAGGGCCGCCGACTGCCCAACTCCTCGGGAGGTAACTTGTCGGTACTGCAATCAGCCCGGCCACATGGTCAAG GATTGCCCTGAGAAGCCAGCCATGATGTGTGAGAATTGTGGCGAAGAAGGTCACACGAAGAACAGGTGTGAGAAC GCCCGAAAGATCAATCGTGATCATGTTGCCACGCTGTCCCCGGACGATGCCTGGGCCAAGATCAAGCGCGCCGTC GCTGAGCGGGACATGGACGACGTCAAGGAAGCTGTTCAAGAGTATGTTAAGGCTCTTGAAGGCGCCGTGACTTAC CGAGACCTTCAGGAGGGCTTAATCAATGAGGGTATCAACCTCTTCATCATCGGCATCGAGCGGCCCCTCGCCCCG GTCTTCACCAACATGGACTTACAGGGGAACATGGGCAAGAAGTTCAGTATCTCCTTCCGCTTTTCCGAGAAACCC GATCGTCCTCGTGAGGCTGAGGCGTTTCCAAAGAGTCGCGACGAGCTACTGGCTCGCCTCGAAGACGCCGGCGAG GTCGTCAACAACGGGCGCTCGCTCTGCCACAACTGCGGAGAATTGGGACACGTTGCGAAATATTGCACCCAGGAA AGGGTGGACAAGCCCGAGGGACCTAAGATTACGTGCACAAATTGCGGAGAGGATGGCCATCGTCTTCGGGATTGT CCCCAGCCAAGGGTGGACAGATTTGCCTGCCGCAACTGCGGCAAATCCGGCCACAAGGCGACGGACTGTGAGGAG CCTGCCAACCTTGACAACGTCGAGTGCCGCAAATGCGGCGAAACGGGACACTTCTCTCGAGATTGTCCTCAGGCC GGCCCTCGAGGCTGTCGCAACTGCGGCCAGGAAGGCCACATCGCAAAAGATTGCGACCAGCCAAGAAACATGGAC AATGTCATCTGTCGCAACTGCGAAAAGACAGGCCACGTGAGCCGAGACTGCCCGGAGCCGAAAGACTGGAGCAAG GTCCAGTGCAGCAATTGCCAGCAGTACGGCCACACCAAGGTCCGCTGCCAGCAGCCGCCGGCGGAATCCGAGGCT TTCCAGGACGGGGGATTCGACGCCGCCGCAGACAATGCCGGTGAACCCGTCAACGACACATGGGGAAACTCAGGT GCTCCAGCGACCGCGGCGAACGTGGCGGCTTCTGGTCCCCGAAAAGAGGCCATGTGTGTCGGGCTCGGGCCTACG GATTGA |
| Gene | >Ophio5|512 ATGCAGCTGCCTGAATCTCTGCCTGGCGAGGATTGGGAAAGCTCCGGTGGCCTTGACGCCTCAGGCCGCCAGAAC GCCCTACGGCTTGCACTGTGGCCGGCTCGGAAAATTAAAACCTTGCACTTCAACCGAAACGCGTTCTTGGTCGCC TTCTTTCCTCCAGCTTCCCTCACGCATCGCAACGTCTCTGCACAGAACTCCAAGCGCTGAAGCTTCTGAGGCAAA CGGACATCACTTGACAGCTTCCATCGTTGGTAGGTCCTCTCTCATCTTATTTTCTCGTGCCTTGACATTCGGCTT GAGAAAAAAATGTGCTGCCTCTTCATGTTCCCTTACCCATCGTCAGAATATCCGCAGTATCGGAAGCAACCCTCT TGACGTGTCGTGAGATGACGAAGATCGGATGACATAAACTGCCAGTGCTTTTTCTCCGATCCTCTCGCGCGTCTC GTCTCTTCACATCTTTCCCTCGCCACCTTCTTTCTCGTTACCCATTTCATCCTTTCCTCCTCCTATATTTCACTT CTGTCCCGCACACTTTCATTTCGACTACTCACGTCGCGTGCAGCATTTTTTCCAGCATGTTCTGGGACAACCCGT CCACGGCGGCGGACGCCGATGCCACTGAGGCCAACGGTGGGCATGATTCTTCCCGAGGCCCCGACATGGCCGAGA ACGGTGCTGGGACGGGTGCATGCTACAACTGTGGCGAGATCGGGTACGTTTCATTGTCGACATGGCCAAGGGAAA CTCGCGTTACTGACTTCTCACTAGACATAGGGCCGCCGACTGCCCAACTCCTCGGGAGGTAACTTGTCGGTACTG CAATCAGCCCGGCCACATGGTCAAGGATTGCCCTGAGAAGCCAGCCATGATGTGTGAGAATTGTGGCGAAGAAGG TAGGCCTAGTCGCTGCGGAAGCTGTGCGCTTGAAAAGTTTGAGTCCGCTGACGAGCTGTGCCAATAGGTCACACG AAGAACAGGTGTGAGAACGCCCGAAAGATCAATCGTGATCATGTTGCCACGCTGTCCCCGGACGATGCCTGGGCC AAGATCAAGCGCGCCGTCGCTGAGCGGGACATGGACGACGTCAAGGAAGCTGTTCAAGAGTATGTTAAGGCTCTT GAAGGCGCCGTGACTTACCGAGACCTTCAGGAGGGCTTAATCAATGAGGGTATCAACCTCTTCATCATCGGCATC GAGCGGCCCCTCGCCCCGGTCTTCACCAACATGGACTTACAGGGGAACATGGGCAAGAAGTTCAGTATCTCCTTC CGCTTTTCCGAGAAACCCGATCGTCCTCGTGAGGCTGAGGCGTTTCCAAAGAGTCGCGACGAGCTACTGGCTCGC CTCGAAGACGCCGGCGAGGTCGTCAACAACGGGCGCTCGCTCTGCCACAACTGCGGAGAATTGGGACACGTTGCG AAATATTGCACCCAGGAAAGGGTGGACAAGCCCGAGGGACCTAAGATTACGTGCACAAATTGCGGAGAGGATGGC CATCGTCTTCGGGATTGTATGACAGCCCCTATCCGACCTCTTGACAATGAGCCCAAGCTGACGTCTTCGTTTCTA GGTCCCCAGCCAAGGGTGGACAGATTTGCCTGCCGCAACTGCGGGTACGTCAAGCTCTCTCAGTGTTTGTGTGCT TATTGCTGATGTTGATTGTAGCAAATCCGGCCACAAGGCGACGGACTGTGAGGAGCCTGCCAACCTTGACAACGT CGAGTGCCGCAAATGCGGCGAAAGTGAGTCTGCCTGGTAATGTGTCTGCCTCCGATAGATGTGCTAATGCTGCAA AGCGGGACACTTCTCTCGAGATTGTCCTCAGGCCGGCCCTCGAGGCTGTCGCAACTGCGGCCAGGAAGGCCACAT CGCAAAAGATTGCGACCAGCCAAGAAACATGGACAATGTCATCTGTCGCAACTGCGAAAAGACAGGCCACGTGAG CCGAGACTGCCCGGAGCCGAAAGACTGTAAGAGCACTTATCCGGGGAAGCTGGGGCGGCATCAGCTAACATATTT GCAGGGAGCAAGGTCCAGTGCAGCAATTGCCAGCAGTACGGCCACACCAAGGTCCGCTGCCAGCAGCCGCCGGCG GAATCCGAGGCTTTCCAGGACGGGGGATTCGACGCCGCCGCAGACAATGCCGGTGAACCCGTCAACGACACATGG GGAAACTCAGGTGCTCCAGCGACCGCGTCCGACTCGGTGGGATGGTGATTCAGAAGGCTTCGTTGTGGACCAGAC AGGGCGAACGTGGCGGCTTCTGGTCCCCGAAAAGAGGCCATGTGTGGTAGGCAGCCGGTTTGATTCCCGCTTTTT ATTTAGAGAAGCTGAGGGTTACCTTACAGTCGGGCTCGGGCCTACGGATTGA |