© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5104 |
| Gene name | |
| Location | scaffold_41:39574..40402 |
| Strand | - |
| Gene length (bp) | 828 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 825 |
| Protein length (aa) | 275 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02291 | TFIID-31kDa | Transcription initiation factor IID, 31kD subunit | 1.1E-40 | 64 | 210 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05027|TAF9_YEAST | Transcription initiation factor TFIID subunit 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF9 PE=1 SV=1 | 59 | 211 | 7.0E-26 |
| sp|Q09869|TAF9_SCHPO | Transcription initiation factor TFIID subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf9 PE=1 SV=1 | 67 | 233 | 3.0E-20 |
| sp|Q5R7P7|TAF9B_PONAB | Transcription initiation factor TFIID subunit 9B OS=Pongo abelii GN=TAF9B PE=2 SV=1 | 67 | 221 | 2.0E-12 |
| sp|Q9HBM6|TAF9B_HUMAN | Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1 | 67 | 221 | 2.0E-12 |
| sp|Q6NZA9|TAF9B_MOUSE | Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2 | 67 | 221 | 6.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q05027|TAF9_YEAST | Transcription initiation factor TFIID subunit 9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF9 PE=1 SV=1 | 59 | 211 | 7.0E-26 |
| sp|Q09869|TAF9_SCHPO | Transcription initiation factor TFIID subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf9 PE=1 SV=1 | 67 | 233 | 3.0E-20 |
| sp|Q5R7P7|TAF9B_PONAB | Transcription initiation factor TFIID subunit 9B OS=Pongo abelii GN=TAF9B PE=2 SV=1 | 67 | 221 | 2.0E-12 |
| sp|Q9HBM6|TAF9B_HUMAN | Transcription initiation factor TFIID subunit 9B OS=Homo sapiens GN=TAF9B PE=1 SV=1 | 67 | 221 | 2.0E-12 |
| sp|Q6NZA9|TAF9B_MOUSE | Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2 | 67 | 221 | 6.0E-12 |
| sp|Q62880|TAF9B_RAT | Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2 | 67 | 221 | 7.0E-12 |
| sp|Q16594|TAF9_HUMAN | Transcription initiation factor TFIID subunit 9 OS=Homo sapiens GN=TAF9 PE=1 SV=1 | 67 | 221 | 1.0E-11 |
| sp|Q8VI33|TAF9_MOUSE | Transcription initiation factor TFIID subunit 9 OS=Mus musculus GN=Taf9 PE=1 SV=1 | 67 | 214 | 2.0E-11 |
| sp|Q5BKE0|TAF9_RAT | Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1 | 67 | 214 | 3.0E-11 |
| sp|Q17QQ4|TAF9_BOVIN | Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1 | 67 | 221 | 5.0E-11 |
| sp|Q27272|TAF9_DROME | Transcription initiation factor TFIID subunit 9 OS=Drosophila melanogaster GN=e(y)1 PE=1 SV=1 | 67 | 210 | 3.0E-08 |
| sp|Q9SYH2|TAF9_ARATH | Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana GN=TAF9 PE=1 SV=1 | 67 | 209 | 4.0E-08 |
| sp|Q8SSI9|TAF9_ENCCU | Transcription initiation factor TFIID subunit 9 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TAF9 PE=1 SV=1 | 67 | 123 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006352 | DNA-templated transcription, initiation | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5104 MASTQPQTNGAGPSAAPPSTNSSQTLPNTLPPTSSVTASQPQPQSQPQPPPAPSTAPAPPTASDPRPRDARLIEL LLTSQGVTSYEQRVPLLLLDFAYRHASAVLSDALHLAGDPHVTQAGGKPSASSGAIATAPGEAPITANAIKLAIS ARLSYQFRGGSAGGGIDKDHMQELARERNKVALPRIVPNEWGVRLPSERFVLSGASWGLKDMWEGDGPDGGDDDD DDDDDDQLGGDAMEGVQGPDPEDIGGDGVEGGTVEDVFGEDVDEVMEENG |
| Coding | >Ophio5|5104 ATGGCCTCGACCCAGCCGCAGACCAACGGCGCCGGCCCCAGCGCTGCTCCCCCCTCGACAAACTCATCCCAGACG CTTCCCAACACTCTGCCGCCCACCTCGAGCGTCACCGCTTCGCAGCCGCAGCCGCAATCGCAACCGCAACCTCCT CCCGCGCCGAGCACTGCTCCCGCGCCGCCGACGGCCTCCGACCCCAGACCTCGCGACGCCCGCCTGATCGAGCTG CTACTCACGTCGCAGGGCGTCACCTCGTACGAACAGCGCGTTCCGCTCCTTCTCCTCGACTTCGCCTATCGTCAC GCCTCCGCCGTCCTCAGCGACGCTCTGCATCTGGCCGGCGATCCGCACGTTACTCAAGCTGGCGGTAAGCCGTCC GCCTCGTCCGGCGCCATCGCCACCGCGCCCGGCGAGGCTCCCATCACGGCGAATGCCATCAAGTTGGCCATTAGC GCCAGACTGTCCTATCAGTTTCGCGGTGGGAGTGCCGGCGGCGGCATCGACAAGGATCATATGCAGGAGCTGGCC CGAGAGCGCAATAAGGTCGCCCTGCCGAGAATCGTGCCCAACGAGTGGGGCGTCCGTCTGCCCAGCGAGCGCTTC GTTCTCAGTGGCGCAAGCTGGGGTCTCAAGGACATGTGGGAGGGCGACGGGCCTGACGGCGGCGACGACGACGAC GACGACGACGACGACGACCAACTGGGCGGGGATGCCATGGAGGGCGTCCAAGGACCAGATCCCGAAGATATCGGC GGCGATGGCGTTGAGGGAGGCACGGTAGAGGACGTGTTTGGCGAAGACGTCGACGAGGTGATGGAAGAGAATGGC |
| Transcript | >Ophio5|5104 ATGGCCTCGACCCAGCCGCAGACCAACGGCGCCGGCCCCAGCGCTGCTCCCCCCTCGACAAACTCATCCCAGACG CTTCCCAACACTCTGCCGCCCACCTCGAGCGTCACCGCTTCGCAGCCGCAGCCGCAATCGCAACCGCAACCTCCT CCCGCGCCGAGCACTGCTCCCGCGCCGCCGACGGCCTCCGACCCCAGACCTCGCGACGCCCGCCTGATCGAGCTG CTACTCACGTCGCAGGGCGTCACCTCGTACGAACAGCGCGTTCCGCTCCTTCTCCTCGACTTCGCCTATCGTCAC GCCTCCGCCGTCCTCAGCGACGCTCTGCATCTGGCCGGCGATCCGCACGTTACTCAAGCTGGCGGTAAGCCGTCC GCCTCGTCCGGCGCCATCGCCACCGCGCCCGGCGAGGCTCCCATCACGGCGAATGCCATCAAGTTGGCCATTAGC GCCAGACTGTCCTATCAGTTTCGCGGTGGGAGTGCCGGCGGCGGCATCGACAAGGATCATATGCAGGAGCTGGCC CGAGAGCGCAATAAGGTCGCCCTGCCGAGAATCGTGCCCAACGAGTGGGGCGTCCGTCTGCCCAGCGAGCGCTTC GTTCTCAGTGGCGCAAGCTGGGGTCTCAAGGACATGTGGGAGGGCGACGGGCCTGACGGCGGCGACGACGACGAC GACGACGACGACGACGACCAACTGGGCGGGGATGCCATGGAGGGCGTCCAAGGACCAGATCCCGAAGATATCGGC GGCGATGGCGTTGAGGGAGGCACGGTAGAGGACGTGTTTGGCGAAGACGTCGACGAGGTGATGGAAGAGAATGGC TAG |
| Gene | >Ophio5|5104 ATGGCCTCGACCCAGCCGCAGACCAACGGCGCCGGCCCCAGCGCTGCTCCCCCCTCGACAAACTCATCCCAGACG CTTCCCAACACTCTGCCGCCCACCTCGAGCGTCACCGCTTCGCAGCCGCAGCCGCAATCGCAACCGCAACCTCCT CCCGCGCCGAGCACTGCTCCCGCGCCGCCGACGGCCTCCGACCCCAGACCTCGCGACGCCCGCCTGATCGAGCTG CTACTCACGTCGCAGGGCGTCACCTCGTACGAACAGCGCGTTCCGCTCCTTCTCCTCGACTTCGCCTATCGTCAC GCCTCCGCCGTCCTCAGCGACGCTCTGCATCTGGCCGGCGATCCGCACGTTACTCAAGCTGGCGGTAAGCCGTCC GCCTCGTCCGGCGCCATCGCCACCGCGCCCGGCGAGGCTCCCATCACGGCGAATGCCATCAAGTTGGCCATTAGC GCCAGACTGTCCTATCAGTTTCGCGGTGGGAGTGCCGGCGGCGGCATCGACAAGGATCATATGCAGGAGCTGGCC CGAGAGCGCAATAAGGTCGCCCTGCCGAGAATCGTGCCCAACGAGTGGGGCGTCCGTCTGCCCAGCGAGCGCTTC GTTCTCAGTGGCGCAAGCTGGGGTCTCAAGGACATGTGGGAGGGCGACGGGCCTGACGGCGGCGACGACGACGAC GACGACGACGACGACGACCAACTGGGCGGGGATGCCATGGAGGGCGTCCAAGGACCAGATCCCGAAGATATCGGC GGCGATGGCGTTGAGGGAGGCACGGTAGAGGACGTGTTTGGCGAAGACGTCGACGAGGTGATGGAAGAGAATGGC TAG |