© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ophio5|5083 |
| Gene name | |
| Location | scaffold_409:13403..15263 |
| Strand | - |
| Gene length (bp) | 1860 |
| Transcript length (bp) | 1638 |
| Coding sequence length (bp) | 1635 |
| Protein length (aa) | 545 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01593 | Amino_oxidase | Flavin containing amine oxidoreductase | 3.5E-50 | 69 | 532 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 2.7E-16 | 64 | 130 |
| PF01266 | DAO | FAD dependent oxidoreductase | 3.4E-08 | 61 | 202 |
| PF00890 | FAD_binding_2 | FAD binding domain | 1.4E-06 | 62 | 101 |
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 2.7E-06 | 29 | 105 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 4.1E-05 | 61 | 105 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9CAE3|FLD_ARATH | Protein FLOWERING LOCUS D OS=Arabidopsis thaliana GN=FLD PE=1 SV=1 | 58 | 509 | 4.0E-25 |
| sp|Q8H191|PAO4_ARATH | Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1 | 58 | 531 | 1.0E-23 |
| sp|Q8C0L6|PAOX_MOUSE | Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus GN=Paox PE=1 SV=3 | 60 | 356 | 1.0E-18 |
| sp|P31225|CBP1_CANAL | Corticosteroid-binding protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBP1 PE=1 SV=2 | 62 | 525 | 8.0E-17 |
| sp|Q9LYT1|PAO3_ARATH | Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1 | 49 | 537 | 3.0E-16 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9CAE3|FLD_ARATH | Protein FLOWERING LOCUS D OS=Arabidopsis thaliana GN=FLD PE=1 SV=1 | 58 | 509 | 4.0E-25 |
| sp|Q8H191|PAO4_ARATH | Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1 | 58 | 531 | 1.0E-23 |
| sp|Q8C0L6|PAOX_MOUSE | Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Mus musculus GN=Paox PE=1 SV=3 | 60 | 356 | 1.0E-18 |
| sp|P31225|CBP1_CANAL | Corticosteroid-binding protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CBP1 PE=1 SV=2 | 62 | 525 | 8.0E-17 |
| sp|Q9LYT1|PAO3_ARATH | Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1 | 49 | 537 | 3.0E-16 |
| sp|O96570|A37C_DROLE | Protein anon-37Cs OS=Drosophila lebanonensis GN=anon-37Cs PE=3 SV=1 | 61 | 402 | 1.0E-15 |
| sp|Q8CIG3|KDM1B_MOUSE | Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1b PE=1 SV=1 | 84 | 368 | 2.0E-15 |
| sp|F4JLS1|LDL3_ARATH | Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=LDL3 PE=2 SV=1 | 62 | 356 | 2.0E-15 |
| sp|P18487|A37C_DROME | Protein anon-37Cs OS=Drosophila melanogaster GN=anon-37Cs PE=2 SV=3 | 61 | 402 | 2.0E-15 |
| sp|P50264|FMS1_YEAST | Polyamine oxidase FMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMS1 PE=1 SV=1 | 58 | 534 | 2.0E-15 |
| sp|Q865R1|PAOX_BOVIN | Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Bos taurus GN=PAOX PE=1 SV=3 | 56 | 542 | 4.0E-15 |
| sp|Q8VXV7|LDL1_ARATH | Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1 | 49 | 525 | 5.0E-15 |
| sp|Q8NB78|KDM1B_HUMAN | Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=3 | 84 | 368 | 5.0E-14 |
| sp|Q01H90|LDL3_ORYSI | Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=3 SV=1 | 83 | 525 | 1.0E-13 |
| sp|O96566|A37C_DROSI | Protein anon-37Cs (Fragment) OS=Drosophila simulans GN=anon-37Cs PE=3 SV=1 | 40 | 402 | 2.0E-13 |
| sp|Q7XUR2|LDL3_ORYSJ | Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2 | 83 | 525 | 3.0E-13 |
| sp|Q6YYZ1|LDL2_ORYSJ | Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1 | 78 | 543 | 9.0E-13 |
| sp|Q9SKX5|PAO2_ARATH | Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1 | 83 | 537 | 1.0E-12 |
| sp|Q9LID0|LDL2_ARATH | Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1 | 83 | 525 | 2.0E-12 |
| sp|Q6QHF9|PAOX_HUMAN | Peroxisomal N(1)-acetyl-spermine/spermidine oxidase OS=Homo sapiens GN=PAOX PE=1 SV=3 | 81 | 509 | 2.0E-11 |
| sp|Q9FNA2|PAO1_ARATH | Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1 | 77 | 534 | 6.0E-11 |
| sp|Q9NWM0|SMOX_HUMAN | Spermine oxidase OS=Homo sapiens GN=SMOX PE=1 SV=1 | 58 | 359 | 5.0E-09 |
| sp|Q9VW97|LSDA_DROME | Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1 | 62 | 131 | 1.0E-07 |
| sp|Q9SU79|PAO5_ARATH | Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1 | 59 | 149 | 2.0E-07 |
| sp|Q99K82|SMOX_MOUSE | Spermine oxidase OS=Mus musculus GN=Smox PE=1 SV=1 | 58 | 359 | 7.0E-07 |
| sp|Q55629|Y782_SYNY3 | Uncharacterized protein slr0782 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0782 PE=3 SV=1 | 51 | 122 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Peroxisomal targeting signal | 0.4384 | 0.4933 | 0.3465 | 0.0651 | 0.3269 | 0.1588 | 0.0941 | 0.1865 | 0.203 | 0.3535 |
| Orthofinder run ID | 4 |
| Orthogroup | 3653 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ophio5|5083 MENYSVCHTTSRRASSKIYQDLRSVRLASLPGLGRDQLLRTMAAMDVFAQCKNRDPMAKPHVAVVGAGLAGLRCA HLLQRHGAFRVTVIEARKRVGGRLYQEKLSNGHVVDVGPNWIHGTLDNPMHDLARQTKTAIGRWDASSHVFDQSG LLFPANEGERYADVMWDIIQDAFKQSNKSADIHSTKSLLDFFHEKVAERFPHSEHDRRIVLQLAETWGSFVGSPV SRQSLKFFWLEECIDGENLFCAGTYNKILDAVARPVLAESEILFDTKVQRISCRGRQGEKTRVHVLDSSTLGGHE TVLSFDEVVVTCPLGWLKRNLDAFEPPLPARLTRAIGSIGYGCLEKVYISFPKAFWLSEDGHDNQVRGFIQWLSP DYAPDSNPDRWPQEAVELASLEPGAAHPSLLFYLYGDQSRHVAAKVTALQTEAERDGFLTHYFKPYYSRLPNFSE ASPDCRASACLATAWVCDEFAGFGSYSNFQVGLEEGDEDIKTMRAGLPERGLWFAGEHTAPFVAVGTATGAYWSG ESVGRRVAEAYGLSSEWKGE |
| Coding | >Ophio5|5083 ATGGAAAACTACTCGGTATGCCATACCACGTCGCGACGCGCCTCGTCCAAGATCTACCAAGACCTCCGCTCCGTC CGACTCGCCAGTCTGCCCGGGCTGGGCCGGGACCAGCTTTTACGGACCATGGCGGCCATGGACGTCTTCGCTCAG TGCAAGAATCGCGACCCGATGGCAAAGCCGCACGTGGCCGTCGTCGGTGCCGGCCTGGCCGGTCTACGGTGCGCT CATCTGCTACAGCGGCATGGCGCTTTCCGGGTCACCGTGATTGAGGCGAGGAAACGCGTCGGTGGCCGTCTCTAT CAGGAGAAGCTCTCCAACGGACACGTCGTCGACGTCGGCCCCAATTGGATTCATGGCACGCTGGATAATCCGATG CACGATCTGGCCCGTCAGACGAAGACGGCTATCGGCCGCTGGGATGCCAGCTCCCACGTCTTCGACCAGTCCGGC CTCTTGTTCCCCGCCAACGAGGGGGAAAGGTACGCTGACGTCATGTGGGACATCATCCAGGACGCCTTCAAGCAG TCCAACAAGTCCGCCGACATCCACAGCACCAAGAGCCTCTTGGATTTTTTCCACGAAAAGGTGGCCGAGAGGTTT CCGCACTCGGAGCATGATAGACGCATCGTCTTGCAGCTCGCCGAGACGTGGGGTTCCTTTGTTGGCAGCCCGGTG TCGCGTCAGAGCCTCAAGTTTTTCTGGCTCGAGGAGTGCATCGATGGAGAGAATCTGTTCTGTGCCGGCACTTAC AACAAGATTCTCGACGCCGTCGCAAGGCCGGTGCTGGCCGAGTCAGAAATCTTATTTGATACAAAGGTGCAGAGG ATATCGTGTCGCGGACGGCAAGGCGAGAAGACGCGTGTCCATGTCCTTGATAGTAGTACGCTCGGCGGCCACGAG ACGGTCCTCTCCTTTGACGAGGTTGTCGTTACTTGTCCCCTTGGATGGCTGAAGCGGAACCTCGACGCCTTTGAG CCGCCTCTTCCCGCACGCCTGACCCGGGCCATCGGTTCCATCGGCTACGGCTGTCTGGAAAAGGTGTACATCAGC TTCCCCAAAGCCTTTTGGTTGTCGGAAGACGGGCACGACAACCAGGTCCGGGGCTTCATCCAGTGGCTCTCACCC GACTACGCCCCAGACTCGAACCCGGACCGATGGCCACAGGAAGCAGTCGAGCTGGCTAGCCTCGAGCCCGGCGCC GCCCACCCCTCTCTCCTCTTCTACCTCTACGGCGATCAGTCGCGGCACGTGGCAGCAAAGGTGACGGCTCTACAG ACGGAAGCCGAAAGAGACGGCTTCCTAACTCACTATTTTAAGCCCTACTACTCACGACTGCCGAATTTTTCCGAA GCCTCGCCCGATTGCCGCGCCTCTGCGTGCCTGGCGACGGCCTGGGTGTGCGACGAGTTCGCCGGCTTCGGCTCT TACAGCAACTTCCAGGTCGGCCTCGAGGAGGGAGACGAGGATATCAAGACGATGAGGGCGGGGCTCCCGGAGCGC GGGCTTTGGTTCGCGGGCGAGCATACCGCTCCGTTTGTCGCCGTAGGGACGGCCACGGGGGCCTACTGGAGTGGT GAATCGGTGGGAAGACGGGTAGCTGAGGCGTATGGGCTATCGTCTGAGTGGAAGGGGGAG |
| Transcript | >Ophio5|5083 ATGGAAAACTACTCGGTATGCCATACCACGTCGCGACGCGCCTCGTCCAAGATCTACCAAGACCTCCGCTCCGTC CGACTCGCCAGTCTGCCCGGGCTGGGCCGGGACCAGCTTTTACGGACCATGGCGGCCATGGACGTCTTCGCTCAG TGCAAGAATCGCGACCCGATGGCAAAGCCGCACGTGGCCGTCGTCGGTGCCGGCCTGGCCGGTCTACGGTGCGCT CATCTGCTACAGCGGCATGGCGCTTTCCGGGTCACCGTGATTGAGGCGAGGAAACGCGTCGGTGGCCGTCTCTAT CAGGAGAAGCTCTCCAACGGACACGTCGTCGACGTCGGCCCCAATTGGATTCATGGCACGCTGGATAATCCGATG CACGATCTGGCCCGTCAGACGAAGACGGCTATCGGCCGCTGGGATGCCAGCTCCCACGTCTTCGACCAGTCCGGC CTCTTGTTCCCCGCCAACGAGGGGGAAAGGTACGCTGACGTCATGTGGGACATCATCCAGGACGCCTTCAAGCAG TCCAACAAGTCCGCCGACATCCACAGCACCAAGAGCCTCTTGGATTTTTTCCACGAAAAGGTGGCCGAGAGGTTT CCGCACTCGGAGCATGATAGACGCATCGTCTTGCAGCTCGCCGAGACGTGGGGTTCCTTTGTTGGCAGCCCGGTG TCGCGTCAGAGCCTCAAGTTTTTCTGGCTCGAGGAGTGCATCGATGGAGAGAATCTGTTCTGTGCCGGCACTTAC AACAAGATTCTCGACGCCGTCGCAAGGCCGGTGCTGGCCGAGTCAGAAATCTTATTTGATACAAAGGTGCAGAGG ATATCGTGTCGCGGACGGCAAGGCGAGAAGACGCGTGTCCATGTCCTTGATAGTAGTACGCTCGGCGGCCACGAG ACGGTCCTCTCCTTTGACGAGGTTGTCGTTACTTGTCCCCTTGGATGGCTGAAGCGGAACCTCGACGCCTTTGAG CCGCCTCTTCCCGCACGCCTGACCCGGGCCATCGGTTCCATCGGCTACGGCTGTCTGGAAAAGGTGTACATCAGC TTCCCCAAAGCCTTTTGGTTGTCGGAAGACGGGCACGACAACCAGGTCCGGGGCTTCATCCAGTGGCTCTCACCC GACTACGCCCCAGACTCGAACCCGGACCGATGGCCACAGGAAGCAGTCGAGCTGGCTAGCCTCGAGCCCGGCGCC GCCCACCCCTCTCTCCTCTTCTACCTCTACGGCGATCAGTCGCGGCACGTGGCAGCAAAGGTGACGGCTCTACAG ACGGAAGCCGAAAGAGACGGCTTCCTAACTCACTATTTTAAGCCCTACTACTCACGACTGCCGAATTTTTCCGAA GCCTCGCCCGATTGCCGCGCCTCTGCGTGCCTGGCGACGGCCTGGGTGTGCGACGAGTTCGCCGGCTTCGGCTCT TACAGCAACTTCCAGGTCGGCCTCGAGGAGGGAGACGAGGATATCAAGACGATGAGGGCGGGGCTCCCGGAGCGC GGGCTTTGGTTCGCGGGCGAGCATACCGCTCCGTTTGTCGCCGTAGGGACGGCCACGGGGGCCTACTGGAGTGGT GAATCGGTGGGAAGACGGGTAGCTGAGGCGTATGGGCTATCGTCTGAGTGGAAGGGGGAGTGA |
| Gene | >Ophio5|5083 ATGGAAAACTACTCGGTATGCCATACCACGTCGCGACGCGCCTCGTCCAAGATCTACCAAGACCTCCGCTCCGTC CGACTCGCCAGTCTGCCCGGGCTGGGCCGGGACCAGCTTTTACGGACCATGGCGGCCATGGACGTCTTCGCTCAG GTACCCTTTTAACGGGCTTCCACACGCTACGGGCAGCCAGAGATGAATGATCTGACTCACACAACCCCTTCACTC CCCCTCTTCGACGGGCCTGCTAGTGCAAGAATCGCGACCCGATGGCAAAGCCGCACGTGGCCGTCGTCGGTGCCG GCCTGGCCGGTCTACGGTGCGCTCATCTGCTACAGCGGCATGGCGCTTTCCGGGTCACCGTGATTGAGGCGAGGA AACGCGTCGGTGGCCGTCTCTATCAGGAGAAGCTCTCCAACGGACACGTCGTCGACGTCGGCCCCAATTGGATTC ATGGCACGCTGGATAATCCGATGCACGATCTGGCCCGTCAGACGAAGACGGCTATCGGCCGCTGGGATGCCAGCT CCCACGTCTTCGACCAGTCCGGCCTCTTGTTCCCCGCCAACGAGGGGGAAAGGTACGCTGACGTCATGTGGGACA TCATCCAGGACGCCTTCAAGCAGTCCAACAAGTCCGCCGACATCCACAGCACCAAGAGCCTCTTGGATTTTTTCC ACGAAAAGGTGGCCGAGAGGTTTCCGCACTCGGAGCATGATAGACGCATCGTCTTGCAGCTCGCCGAGACGTGGG GTTCCTTTGTTGGCAGCCCGGTGTCGCGTCAGAGCCTCAAGTTTTTCTGGCTCGAGGAGTGCATCGATGGAGGCG AGGAGCCTGAGAAGCCTTGGATCGAGGGGCTTGTGCTGATATCTTGGCAGAGAATCTGTTCTGTGCCGGCACTTA CAACAAGATTCTCGACGCCGTCGCAAGGCCGGTGCTGGCCGAGTCAGAAATCTTATTTGATACAAAGGTGCAGAG GATATCGTGTCGCGGACGGCAAGGCGAGAAGACGCGTGTCCATGTCCTTGATAGTAGTACGCTCGGCGGCCACGA GACGGTCCTCTCCTTTGACGAGGTTGTCGTTACTTGTCCCCTTGGATGGCTGAAGCGGAACCTCGACGCCTTTGA GCCGCCTCTTCCCGCACGCCTGACCCGGGCCATCGGTTCCATCGGCTACGGCTGTCTGGAAAAGGTGAGCGCAGC TGTTGGCGTCAATCCTCTTACTCCCGCTCATGTTCACTCCCCCCCCCCCCCCCCCCCCAGGTGTACATCAGCTTC CCCAAAGCCTTTTGGTTGTCGGAAGACGGGCACGACAACCAGGTCCGGGGCTTCATCCAGTGGCTCTCACCCGAC TACGCCCCAGACTCGAACCCGGACCGATGGCCACAGGAAGCAGTCGAGCTGGCTAGCCTCGAGCCCGGCGCCGCC CACCCCTCTCTCCTCTTCTACCTCTACGGCGATCAGTCGCGGCACGTGGCAGCAAAGGTGACGGCTCTACAGACG GAAGCCGAAAGAGACGGCTTCCTAACTCACTATTTTAAGCCCTACTACTCACGACTGCCGAATTTTTCCGAAGCC TCGCCCGATTGCCGCGCCTCTGCGTGCCTGGCGACGGCCTGGGTGTGCGACGAGTTCGCCGGCTTCGGCTCTTAC AGCAACTTCCAGGTCGGCCTCGAGGAGGGAGACGAGGATATCAAGACGATGAGGGCGGGGCTCCCGGAGCGCGGG CTTTGGTTCGCGGGCGAGCATACCGCTCCGTTTGTCGCCGTAGGGACGGCCACGGGGGCCTACTGGAGTGGTGAA TCGGTGGGAAGACGGGTAGCTGAGGCGTATGGGCTATCGTCTGAGTGGAAGGGGGAGTGA |