Protein ID | Ophio5|5071 |
Gene name | |
Location | scaffold_407:17209..17906 |
Strand | + |
Gene length (bp) | 697 |
Transcript length (bp) | 573 |
Coding sequence length (bp) | 570 |
Protein length (aa) | 190 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06127 | Mpo1-like | 2-hydroxy-palmitic acid dioxygenase Mpo1-like | 2.4E-27 | 4 | 159 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O13737|YDR2_SCHPO | Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.02 PE=4 SV=2 | 5 | 176 | 7.0E-28 |
sp|P25338|YGB0_YEAST | Uncharacterized endoplasmic reticulum membrane protein YGL010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL010W PE=1 SV=2 | 3 | 185 | 3.0E-27 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Peroxisomal targeting signal | 0.2703 | 0.0711 | 0.1211 | 0.0921 | 0.1858 | 0.0504 | 0.8156 | 0.151 | 0.2835 | 0.163 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 21 | 43 | 22 |
2 | 63 | 85 | 22 |
3 | 106 | 125 | 19 |
4 | 140 | 157 | 17 |
Orthofinder run ID | 4 |
Orthogroup | 5436 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ophio5|5071 MSLDLEKHLTFYGAYHHNSVNVAIHMVCVPLILVSAFCMATYTGTLIHTPPWLTMPYLDLNLGTIAALVYASLYI LLEPVAGFVLAAFCVGSAAFANHLRAEAPQATFRAALIVHIVSWIAQFIGHGKFEGRAPALLDNLIQAIFLAPMF VWLELLFKLGYRKELQSRVEKAVQVEIAKFRSQTKNGKAH |
Coding | >Ophio5|5071 ATGTCGCTAGACCTCGAAAAGCACCTGACCTTTTATGGCGCCTATCACCACAACTCGGTCAACGTGGCCATCCAC ATGGTCTGCGTGCCGCTCATCCTCGTCTCGGCCTTTTGCATGGCTACCTACACCGGCACCCTGATCCATACGCCC CCTTGGCTCACCATGCCCTACCTCGACCTCAACTTGGGCACCATAGCTGCCCTCGTCTATGCCTCTCTATACATC CTGCTCGAGCCCGTCGCTGGCTTCGTGCTCGCCGCATTCTGCGTCGGAAGCGCCGCCTTTGCCAACCACCTGCGC GCCGAGGCTCCCCAAGCCACCTTTCGCGCCGCCCTCATCGTTCATATCGTTTCTTGGATCGCCCAGTTCATCGGT CATGGAAAATTCGAGGGTCGTGCCCCCGCACTGCTCGATAACTTGATCCAGGCCATCTTCCTCGCCCCCATGTTC GTATGGCTCGAGCTGCTCTTCAAGCTCGGCTATCGCAAGGAGCTGCAGAGCCGCGTCGAAAAGGCTGTTCAGGTC GAGATCGCCAAATTCAGGTCCCAGACGAAGAACGGCAAGGCTCAC |
Transcript | >Ophio5|5071 ATGTCGCTAGACCTCGAAAAGCACCTGACCTTTTATGGCGCCTATCACCACAACTCGGTCAACGTGGCCATCCAC ATGGTCTGCGTGCCGCTCATCCTCGTCTCGGCCTTTTGCATGGCTACCTACACCGGCACCCTGATCCATACGCCC CCTTGGCTCACCATGCCCTACCTCGACCTCAACTTGGGCACCATAGCTGCCCTCGTCTATGCCTCTCTATACATC CTGCTCGAGCCCGTCGCTGGCTTCGTGCTCGCCGCATTCTGCGTCGGAAGCGCCGCCTTTGCCAACCACCTGCGC GCCGAGGCTCCCCAAGCCACCTTTCGCGCCGCCCTCATCGTTCATATCGTTTCTTGGATCGCCCAGTTCATCGGT CATGGAAAATTCGAGGGTCGTGCCCCCGCACTGCTCGATAACTTGATCCAGGCCATCTTCCTCGCCCCCATGTTC GTATGGCTCGAGCTGCTCTTCAAGCTCGGCTATCGCAAGGAGCTGCAGAGCCGCGTCGAAAAGGCTGTTCAGGTC GAGATCGCCAAATTCAGGTCCCAGACGAAGAACGGCAAGGCTCACTAG |
Gene | >Ophio5|5071 ATGTCGCTAGACCTCGAAAAGCACCTGACCTTTGTGCGTGCCGCTCGCCCCCTTCACCTCATCCCCCCCCCCCCC CCGGACTCCCGCTGACTCGGCTCGACAGTATGGCGCCTATCACCACAACTCGGTCAACGTGGCCATCCACATGGT CTGCGTGCCGCTCATCCTCGTCTCGGCCTTTTGCATGGTACGACGGTCCTCTATTCCAGCTTCTATTCCACGCCC GTAACCTTGCTGCCAGGCTACCTACACCGGCACCCTGATCCATACGCCCCCTTGGCTCACCATGCCCTACCTCGA CCTCAACTTGGGCACCATAGCTGCCCTCGTCTATGCCTCTCTATACATCCTGCTCGAGCCCGTCGCTGGCTTCGT GCTCGCCGCATTCTGCGTCGGAAGCGCCGCCTTTGCCAACCACCTGCGCGCCGAGGCTCCCCAAGCCACCTTTCG CGCCGCCCTCATCGTTCATATCGTTTCTTGGATCGCCCAGTTCATCGGTCATGGAAAATTCGAGGGTCGTGCCCC CGCACTGCTCGATAACTTGATCCAGGCCATCTTCCTCGCCCCCATGTTCGTATGGCTCGAGCTGCTCTTCAAGCT CGGCTATCGCAAGGAGCTGCAGAGCCGCGTCGAAAAGGCTGTTCAGGTCGAGATCGCCAAATTCAGGTCCCAGAC GAAGAACGGCAAGGCTCACTAG |