Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5071
Gene name
Locationscaffold_407:17209..17906
Strand+
Gene length (bp)697
Transcript length (bp)573
Coding sequence length (bp)570
Protein length (aa) 190

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06127 Mpo1-like 2-hydroxy-palmitic acid dioxygenase Mpo1-like 2.4E-27 4 159

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13737|YDR2_SCHPO Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.02 PE=4 SV=2 5 176 7.0E-28
sp|P25338|YGB0_YEAST Uncharacterized endoplasmic reticulum membrane protein YGL010W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL010W PE=1 SV=2 3 185 3.0E-27

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.5

Transmembrane Domains

Domain # Start End Length
1 21 43 22
2 63 85 22
3 106 125 19
4 140 157 17

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5071
MSLDLEKHLTFYGAYHHNSVNVAIHMVCVPLILVSAFCMATYTGTLIHTPPWLTMPYLDLNLGTIAALVYASLYI
LLEPVAGFVLAAFCVGSAAFANHLRAEAPQATFRAALIVHIVSWIAQFIGHGKFEGRAPALLDNLIQAIFLAPMF
VWLELLFKLGYRKELQSRVEKAVQVEIAKFRSQTKNGKAH
Coding >Ophio5|5071
ATGTCGCTAGACCTCGAAAAGCACCTGACCTTTTATGGCGCCTATCACCACAACTCGGTCAACGTGGCCATCCAC
ATGGTCTGCGTGCCGCTCATCCTCGTCTCGGCCTTTTGCATGGCTACCTACACCGGCACCCTGATCCATACGCCC
CCTTGGCTCACCATGCCCTACCTCGACCTCAACTTGGGCACCATAGCTGCCCTCGTCTATGCCTCTCTATACATC
CTGCTCGAGCCCGTCGCTGGCTTCGTGCTCGCCGCATTCTGCGTCGGAAGCGCCGCCTTTGCCAACCACCTGCGC
GCCGAGGCTCCCCAAGCCACCTTTCGCGCCGCCCTCATCGTTCATATCGTTTCTTGGATCGCCCAGTTCATCGGT
CATGGAAAATTCGAGGGTCGTGCCCCCGCACTGCTCGATAACTTGATCCAGGCCATCTTCCTCGCCCCCATGTTC
GTATGGCTCGAGCTGCTCTTCAAGCTCGGCTATCGCAAGGAGCTGCAGAGCCGCGTCGAAAAGGCTGTTCAGGTC
GAGATCGCCAAATTCAGGTCCCAGACGAAGAACGGCAAGGCTCAC
Transcript >Ophio5|5071
ATGTCGCTAGACCTCGAAAAGCACCTGACCTTTTATGGCGCCTATCACCACAACTCGGTCAACGTGGCCATCCAC
ATGGTCTGCGTGCCGCTCATCCTCGTCTCGGCCTTTTGCATGGCTACCTACACCGGCACCCTGATCCATACGCCC
CCTTGGCTCACCATGCCCTACCTCGACCTCAACTTGGGCACCATAGCTGCCCTCGTCTATGCCTCTCTATACATC
CTGCTCGAGCCCGTCGCTGGCTTCGTGCTCGCCGCATTCTGCGTCGGAAGCGCCGCCTTTGCCAACCACCTGCGC
GCCGAGGCTCCCCAAGCCACCTTTCGCGCCGCCCTCATCGTTCATATCGTTTCTTGGATCGCCCAGTTCATCGGT
CATGGAAAATTCGAGGGTCGTGCCCCCGCACTGCTCGATAACTTGATCCAGGCCATCTTCCTCGCCCCCATGTTC
GTATGGCTCGAGCTGCTCTTCAAGCTCGGCTATCGCAAGGAGCTGCAGAGCCGCGTCGAAAAGGCTGTTCAGGTC
GAGATCGCCAAATTCAGGTCCCAGACGAAGAACGGCAAGGCTCACTAG
Gene >Ophio5|5071
ATGTCGCTAGACCTCGAAAAGCACCTGACCTTTGTGCGTGCCGCTCGCCCCCTTCACCTCATCCCCCCCCCCCCC
CCGGACTCCCGCTGACTCGGCTCGACAGTATGGCGCCTATCACCACAACTCGGTCAACGTGGCCATCCACATGGT
CTGCGTGCCGCTCATCCTCGTCTCGGCCTTTTGCATGGTACGACGGTCCTCTATTCCAGCTTCTATTCCACGCCC
GTAACCTTGCTGCCAGGCTACCTACACCGGCACCCTGATCCATACGCCCCCTTGGCTCACCATGCCCTACCTCGA
CCTCAACTTGGGCACCATAGCTGCCCTCGTCTATGCCTCTCTATACATCCTGCTCGAGCCCGTCGCTGGCTTCGT
GCTCGCCGCATTCTGCGTCGGAAGCGCCGCCTTTGCCAACCACCTGCGCGCCGAGGCTCCCCAAGCCACCTTTCG
CGCCGCCCTCATCGTTCATATCGTTTCTTGGATCGCCCAGTTCATCGGTCATGGAAAATTCGAGGGTCGTGCCCC
CGCACTGCTCGATAACTTGATCCAGGCCATCTTCCTCGCCCCCATGTTCGTATGGCTCGAGCTGCTCTTCAAGCT
CGGCTATCGCAAGGAGCTGCAGAGCCGCGTCGAAAAGGCTGTTCAGGTCGAGATCGCCAAATTCAGGTCCCAGAC
GAAGAACGGCAAGGCTCACTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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