Fungal Genomics

at Utrecht University

General Properties

Protein IDOphio5|5067
Gene name
Locationscaffold_407:10873..12205
Strand-
Gene length (bp)1332
Transcript length (bp)990
Coding sequence length (bp)987
Protein length (aa) 329

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04968 CHORD CHORD 1.5E-23 4 61
PF04968 CHORD CHORD 3.0E-26 128 188
PF04969 CS CS domain 3.0E-11 209 287

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9VCC0|CHRD1_DROME Cysteine and histidine-rich domain-containing protein OS=Drosophila melanogaster GN=CHORD PE=1 SV=1 3 297 1.0E-45
sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2 1 296 2.0E-43
sp|D4A4T9|CHRD1_RAT Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1 1 296 2.0E-43
sp|Q9D1P4|CHRD1_MOUSE Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1 1 296 3.0E-43
sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1 1 297 4.0E-43
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Swissprot ID Swissprot Description Start End E-value
sp|Q9VCC0|CHRD1_DROME Cysteine and histidine-rich domain-containing protein OS=Drosophila melanogaster GN=CHORD PE=1 SV=1 3 297 1.0E-45
sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2 1 296 2.0E-43
sp|D4A4T9|CHRD1_RAT Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1 1 296 2.0E-43
sp|Q9D1P4|CHRD1_MOUSE Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1 1 296 3.0E-43
sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1 1 297 4.0E-43
sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1 1 296 4.0E-43
sp|A9YUB1|CHRD1_PIG Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa GN=CHORDC1 PE=2 SV=1 1 296 1.0E-42
sp|Q5RD91|CHRD1_PONAB Cysteine and histidine-rich domain-containing protein 1 OS=Pongo abelii GN=CHORDC1 PE=2 SV=1 1 296 2.0E-42
sp|Q7T3F7|CHRD1_DANRE Cysteine and histidine-rich domain-containing protein 1 OS=Danio rerio GN=chordc1 PE=2 SV=1 1 296 2.0E-42
sp|Q4R7U2|CHRD1_MACFA Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1 1 296 3.0E-42
sp|Q5ZML4|CHRD1_CHICK Cysteine and histidine-rich domain-containing protein 1 OS=Gallus gallus GN=CHORDC1 PE=2 SV=1 1 296 7.0E-41
sp|Q462R2|ITBP2_PIG Integrin beta-1-binding protein 2 OS=Sus scrofa GN=ITGB1BP2 PE=2 SV=1 1 297 2.0E-39
sp|Q9R000|ITBP2_MOUSE Integrin beta-1-binding protein 2 OS=Mus musculus GN=Itgb1bp2 PE=1 SV=1 1 297 4.0E-38
sp|Q9UKP3|ITBP2_HUMAN Integrin beta-1-binding protein 2 OS=Homo sapiens GN=ITGB1BP2 PE=1 SV=1 1 296 2.0E-36
sp|Q9SE33|RAR1_ARATH Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1 4 190 1.0E-23
sp|Q6EPW7|RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2 4 190 1.0E-22
sp|Q9SE33|RAR1_ARATH Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1 3 68 2.0E-14
sp|Q6EPW7|RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2 5 62 1.0E-12
sp|Q9CX34|SGT1_MOUSE Protein SGT1 homolog OS=Mus musculus GN=Sugt1 PE=1 SV=3 175 296 5.0E-07
sp|Q2KIK0|SGT1_BOVIN Protein SGT1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1 209 296 2.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 60 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Expression analysis during behavioral modification. Published in De Bekker et al., 2017.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
SC16a Pure fungal culture 118.92 64.60 173.23
CcL In ants, during behavior modification 80.40 42.17 118.63
CcD In ants, recently dead 155.74 82.47 229.01

Differential expression

Label1 Label2 Q-value Significant difference
SC16a CcL 0.087368 no
SC16a CcD 0.266893 no
CcL CcD 0.002436 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ophio5|5067
MAQKCVRQGCGKQFSDPKEDCHYHPGPPVFHEGQKGWKCCKPRVLTFDEFMTIPPCTTGTHSTTDKPAQLDEGPQ
DDGAALAKKIEALTASAPPRVPIPSSQRTATPPPPPPETDDDDPSLDIPDGAECRRKGCGQRYSKGGSRESEQCL
HHPGAPIFHEGSKGYSCCKRRVLEFDQFLKIEGCKTKSNHLFIGSGSKKKSGPEKLDSVRHDFYQTPTTVIASFF
LKKIEKGTSKVVFEARKLSLDLTTSDSPPKRYAADVPLFGPIDTDASTHKILGTKLELTLVKADGASWPVLRKAW
SDGFKDLEVKLGGVALKVGRRQPPDQRIR
Coding >Ophio5|5067
ATGGCGCAGAAATGTGTGCGTCAGGGCTGCGGCAAGCAGTTCAGCGACCCAAAGGAAGACTGCCACTATCATCCT
GGCCCGCCCGTCTTCCACGAGGGGCAGAAAGGATGGAAGTGCTGCAAGCCGCGCGTCTTGACCTTTGACGAATTC
ATGACCATCCCGCCCTGCACGACCGGCACGCATTCGACAACCGACAAGCCCGCTCAACTCGACGAAGGACCGCAG
GACGACGGCGCGGCCCTGGCCAAGAAGATTGAGGCCTTGACGGCTTCTGCTCCGCCGCGGGTGCCTATACCATCC
TCACAGCGGACGGCTACGCCGCCACCGCCGCCACCGGAGACGGACGACGATGACCCGAGCTTGGACATTCCCGAC
GGTGCCGAGTGCCGGCGGAAAGGATGCGGACAGAGATACAGCAAGGGGGGCTCGCGAGAGTCAGAGCAGTGTCTT
CACCATCCTGGCGCTCCCATTTTCCACGAGGGTAGCAAGGGATACTCGTGCTGCAAGCGGCGCGTCCTGGAGTTC
GACCAGTTTCTGAAGATCGAGGGCTGCAAGACCAAGAGCAATCATCTCTTCATCGGTAGCGGCAGCAAGAAAAAG
TCTGGTCCGGAGAAGCTAGACTCTGTCAGACACGACTTTTATCAGACGCCGACGACCGTCATCGCCTCATTCTTC
CTTAAGAAGATTGAAAAAGGCACATCCAAGGTGGTATTCGAGGCCCGGAAGCTCTCGCTCGACCTGACGACGAGT
GACTCGCCGCCGAAGCGGTACGCCGCCGACGTACCGCTCTTTGGCCCCATTGATACGGATGCGTCGACACATAAG
ATCCTGGGGACGAAGCTGGAGCTGACGCTTGTCAAGGCAGACGGAGCGTCGTGGCCGGTCCTGCGGAAGGCATGG
TCAGACGGTTTTAAAGATTTGGAAGTGAAGTTGGGAGGTGTTGCCTTGAAAGTTGGGAGACGTCAACCTCCAGAC
CAGCGAATTAGA
Transcript >Ophio5|5067
ATGGCGCAGAAATGTGTGCGTCAGGGCTGCGGCAAGCAGTTCAGCGACCCAAAGGAAGACTGCCACTATCATCCT
GGCCCGCCCGTCTTCCACGAGGGGCAGAAAGGATGGAAGTGCTGCAAGCCGCGCGTCTTGACCTTTGACGAATTC
ATGACCATCCCGCCCTGCACGACCGGCACGCATTCGACAACCGACAAGCCCGCTCAACTCGACGAAGGACCGCAG
GACGACGGCGCGGCCCTGGCCAAGAAGATTGAGGCCTTGACGGCTTCTGCTCCGCCGCGGGTGCCTATACCATCC
TCACAGCGGACGGCTACGCCGCCACCGCCGCCACCGGAGACGGACGACGATGACCCGAGCTTGGACATTCCCGAC
GGTGCCGAGTGCCGGCGGAAAGGATGCGGACAGAGATACAGCAAGGGGGGCTCGCGAGAGTCAGAGCAGTGTCTT
CACCATCCTGGCGCTCCCATTTTCCACGAGGGTAGCAAGGGATACTCGTGCTGCAAGCGGCGCGTCCTGGAGTTC
GACCAGTTTCTGAAGATCGAGGGCTGCAAGACCAAGAGCAATCATCTCTTCATCGGTAGCGGCAGCAAGAAAAAG
TCTGGTCCGGAGAAGCTAGACTCTGTCAGACACGACTTTTATCAGACGCCGACGACCGTCATCGCCTCATTCTTC
CTTAAGAAGATTGAAAAAGGCACATCCAAGGTGGTATTCGAGGCCCGGAAGCTCTCGCTCGACCTGACGACGAGT
GACTCGCCGCCGAAGCGGTACGCCGCCGACGTACCGCTCTTTGGCCCCATTGATACGGATGCGTCGACACATAAG
ATCCTGGGGACGAAGCTGGAGCTGACGCTTGTCAAGGCAGACGGAGCGTCGTGGCCGGTCCTGCGGAAGGCATGG
TCAGACGGTTTTAAAGATTTGGAAGTGAAGTTGGGAGGTGTTGCCTTGAAAGTTGGGAGACGTCAACCTCCAGAC
CAGCGAATTAGATGA
Gene >Ophio5|5067
ATGGCGCAGAAATGTGTGCGTCAGGGCTGCGGCAAGCAGTTCAGCGACCCAAAGGAAGACTGCCACTATCATCCT
GGCCCGCCCGTCTTCCACGAGGGGCAGAAAGGTAAGCAGATAGGCAACCGCGAGCCTTTCTTTCCAGCCGACACT
GAGACACACACTGAGCCGCGCCAGGATGGAAGTGCTGCAAGCCGCGCGTCTTGACCTTTGACGAATTCATGACCA
TCCCGCCCTGCACGACCGGCACGCATTCGACAACCGACAAGCCCGCTCAACTCGACGAAGGACCGCAGGACGACG
GCGCGGCCCTGGCCAAGAAGATTGAGGCCTTGACGGCTTCTGCTCCGCCGCGGGTGCCTATACCATCCTCACAGC
GGACGGCTACGCCGCCACCGCCGCCACCGGAGACGGACGACGATGACCCGAGCTTGGACATTCCCGACGGTGCCG
AGTGCCGGCGGAAAGGATGCGGACAGAGATACAGCAAGGGGGGCTCGCGAGAGTCAGAGCAGTGTCTTCACCATC
CTGGCGCTCCCATTTTCCACGAGGGTAGCAAGGGATACTCGTGCTGCAAGCGGCGCGTCCTGGAGTTCGACCAGT
TTCTGAAGATCGAGGGCTGCAAGACCAAGAGCAATCATCTCTTCATCGGTAGCGGCAGCAAGAAAAAGTCTGGTC
CGGAGAAGCTAGACTCTGTCAGGTGAGCACCCTCTGTTTTTATCTGGGCCGCGAAGACTGCGACTGAGAAGATCT
GCAGACACGACTTTTATCAGACGCCGACGACCGTCATCGCCTCATTCTTCCTTAAGAAGATTGAAAAAGGCACAT
CCAAGGTGGTATTCGAGGCCCGGAAGCTCTCGCTCGACCTGACGACGAGTGACTCGCCGCCGAAGCGGTACGCCG
CCGACGTACCGCTCTTTGGCCCCATTGATACGGATGCGTCGACACATAAGATCCTGGGGACGAAGCTGGAGCTGA
CGCTTGTCAAGGCAGACGGAGCGTCGTGGCCGGTCCTGCGGAGTGACGAGGCATTAACGGGCGAGATTTTGCAAG
TTGGAAAGGCTGGACGAGCATAGAGGCATGGTCAGACGGTTTTAAAGAGTATACAACCTTGACTCAGCGTCCAGA
CATGAACGCTAACAGACAGTACGACAAGTTTGGAAGTGAAGTTGGGAGGGTGAGACGGAGACACAAGAGCGTGAG
CCGTCAACGGCCAAACTTCCGGTCCTTAACATAGTGTTGCCTTGAAAGTTGGGAGACGTCAACCTCCAGACCAGC
GAATTAGGTGCGTACCAAAGGAAATAGAAGGCTTGACATGACAGTTGGTGCAGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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